Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47131 * 2 1 4 4 O 1.42902 * 109.47548 * 240.00303 * 2 1 3 5 5 C 1.50706 * 109.47360 * 119.99934 * 2 1 3 6 6 O 1.21280 * 120.00214 * 260.71838 * 5 2 1 7 7 N 1.34779 * 119.99630 * 80.70966 * 5 2 1 8 8 C 1.46502 * 119.99657 * 184.84659 * 7 5 2 9 9 C 1.50698 * 109.47198 * 270.00015 * 8 7 5 10 10 H 1.08006 * 120.00061 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00147 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99572 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47519 * 59.99518 * 13 11 9 15 15 H 1.48496 * 109.47299 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47128 * 299.99720 * 13 11 9 17 17 C 1.46494 * 120.00024 * 4.85258 * 7 5 2 18 18 C 1.53005 * 117.49695 * 182.96403 * 17 7 5 19 19 C 1.53001 * 117.50341 * 114.34142 * 17 7 5 20 20 H 1.08998 * 109.47435 * 299.99732 * 1 2 3 21 21 H 1.09001 * 109.47251 * 59.99611 * 1 2 3 22 22 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47169 * 175.01073 * 3 2 1 24 24 H 1.08989 * 109.47519 * 295.01573 * 3 2 1 25 25 H 1.09005 * 109.47134 * 55.01953 * 3 2 1 26 26 H 0.96694 * 113.99777 * 59.99562 * 4 2 1 27 27 H 1.08994 * 109.47309 * 30.00462 * 8 7 5 28 28 H 1.09005 * 109.46791 * 150.00625 * 8 7 5 29 29 H 0.97003 * 119.99774 * 179.97438 * 12 11 9 30 30 H 1.09002 * 115.55399 * 328.66025 * 17 7 5 31 31 H 1.08996 * 117.50041 * 359.97438 * 18 17 7 32 32 H 1.08999 * 117.50277 * 145.02228 * 18 17 7 33 33 H 1.09001 * 117.49828 * 214.98043 * 19 17 7 34 34 H 1.08997 * 117.49263 * 359.96541 * 19 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2305 6 8 2.3942 -0.0704 2.1950 7 7 2.0793 -2.0571 1.2591 8 6 2.4663 -2.7505 2.4902 9 6 3.9600 -2.9494 2.5065 10 1 4.5611 -2.5944 1.6823 11 6 4.5594 -3.5845 3.5734 12 7 3.8276 -4.0163 4.5771 13 14 6.4110 -3.8305 3.5938 14 1 7.0866 -2.5093 3.5373 15 1 6.8031 -4.5345 4.8411 16 1 6.8153 -4.6438 2.4190 17 6 1.7435 -2.8274 0.0591 18 6 1.7483 -4.3530 0.1747 19 6 2.8626 -3.6406 -0.5945 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1264 1.4438 0.0894 24 1 1.7514 1.9300 -0.9311 25 1 1.6056 1.9815 0.8420 26 1 1.7210 -0.2700 -1.9979 27 1 2.1700 -2.1530 3.3523 28 1 1.9702 -3.7202 2.5323 29 1 4.2492 -4.4635 5.3276 30 1 1.0009 -2.3745 -0.5977 31 1 2.0017 -4.7836 1.1435 32 1 1.0087 -4.9042 -0.4061 33 1 2.8560 -3.7229 -1.6814 34 1 3.8488 -3.6020 -0.1320 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232556377.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -80.926680 kcal Electronic energy + Delta-G solvation = -16806.465829 eV Core-core repulsion = 14125.554284 eV Total energy + Delta-G solvation = -2680.911545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27632 -38.41537 -37.99681 -35.19443 -33.74072 -32.80429 -29.66492 -28.20178 -25.79075 -24.00670 -23.13852 -22.35935 -19.84445 -18.67926 -18.58893 -17.43045 -17.01011 -16.60461 -15.69042 -15.55692 -15.18379 -14.79773 -14.48213 -14.21383 -13.63355 -13.39186 -13.15132 -13.10796 -12.80612 -12.70992 -12.64484 -12.48232 -12.20305 -12.05250 -11.93598 -11.42741 -11.38343 -10.84893 -10.64679 -10.46959 -9.22702 -8.23845 -6.37395 1.31682 1.35933 1.43142 1.64360 2.25443 2.39444 3.03634 3.08247 3.29913 3.67002 3.89593 3.99467 4.11359 4.24974 4.34777 4.66688 4.73574 4.78115 4.82932 4.89400 5.04582 5.09362 5.17108 5.18717 5.27800 5.33608 5.50665 5.56017 5.83519 6.04510 6.67232 6.78836 6.94707 7.24947 7.42198 8.82628 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.009376 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.090315 B = 2985.746985 C = 3315.734251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 C -0.156 4.156 4 O -0.549 6.549 5 C 0.506 3.494 6 O -0.593 6.593 7 N -0.568 5.568 8 C 0.256 3.744 9 C -0.531 4.531 10 H 0.045 0.955 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.262 1.262 17 C 0.086 3.914 18 C -0.192 4.192 19 C -0.178 4.178 20 H 0.059 0.941 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.398 0.602 27 H -0.006 1.006 28 H 0.032 0.968 29 H 0.267 0.733 30 H 0.165 0.835 31 H 0.070 0.930 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 4.823 -15.536 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.081 3.919 3 C -0.213 4.213 4 O -0.359 6.359 5 C 0.294 3.706 6 O -0.475 6.475 7 N -0.296 5.296 8 C 0.135 3.865 9 C -0.570 4.570 10 H 0.063 0.937 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.787 3.213 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.187 1.187 17 C -0.018 4.018 18 C -0.230 4.230 19 C -0.216 4.216 20 H 0.078 0.922 21 H 0.132 0.868 22 H 0.086 0.914 23 H 0.057 0.943 24 H 0.127 0.873 25 H 0.080 0.920 26 H 0.250 0.750 27 H 0.012 0.988 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.182 0.818 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.321 4.654 -14.412 16.822 hybrid contribution 1.005 0.067 0.561 1.153 sum -6.316 4.721 -13.852 15.939 Atomic orbital electron populations 1.22438 0.91264 1.03881 1.04857 1.21128 0.95589 0.91743 0.83490 1.22222 1.00988 0.93969 1.04158 1.86774 1.77661 1.55741 1.15711 1.21093 0.77635 0.82272 0.89585 1.90649 1.50564 1.66593 1.39663 1.47725 1.63738 1.05684 1.12425 1.18836 0.94631 0.91434 0.81640 1.21538 0.93266 1.37260 1.04902 0.93657 1.25810 1.03308 0.95186 0.94773 1.70034 1.37514 1.39947 1.09165 0.85545 0.79416 0.78218 0.78131 1.20520 1.19926 1.18697 1.22039 1.01828 0.89347 0.88536 1.23374 1.02964 0.94416 1.02218 1.23188 0.94222 1.04390 0.99828 0.92209 0.86780 0.91353 0.94309 0.87311 0.92032 0.74974 0.98796 0.95029 0.92397 0.81843 0.91170 0.85062 0.85760 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 8.62 71.98 0.62 -2.85 16 2 C 0.12 3.55 0.96 -11.54 -0.01 3.54 16 3 C -0.16 -4.04 8.21 71.98 0.59 -3.45 16 4 O -0.55 -12.86 9.65 -148.98 -1.44 -14.30 16 5 C 0.51 22.61 6.66 87.66 0.58 23.20 16 6 O -0.59 -32.54 15.77 -3.03 -0.05 -32.59 16 7 N -0.57 -26.12 2.79 -802.13 -2.23 -28.35 16 8 C 0.26 14.54 4.67 85.63 0.40 14.94 16 9 C -0.53 -32.14 8.70 25.60 0.22 -31.91 16 10 H 0.05 2.79 7.21 -2.91 -0.02 2.77 16 11 C 0.01 0.48 5.46 84.65 0.46 0.95 16 12 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 13 Si 0.96 46.93 29.54 68.60 2.03 48.96 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 15 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 17 C 0.09 3.00 4.54 44.99 0.20 3.20 16 18 C -0.19 -6.51 9.74 30.60 0.30 -6.22 16 19 C -0.18 -6.11 10.27 30.60 0.31 -5.79 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.45 6.86 -2.39 -0.02 1.43 16 23 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.06 1.73 8.05 -2.38 -0.02 1.71 16 26 H 0.40 4.34 9.04 -74.06 -0.67 3.67 16 27 H -0.01 -0.39 7.49 -2.39 -0.02 -0.41 16 28 H 0.03 1.82 5.99 -2.38 -0.01 1.80 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.16 4.38 4.99 -2.39 -0.01 4.37 16 31 H 0.07 2.98 6.11 -2.39 -0.01 2.97 16 32 H 0.13 3.27 8.14 -2.39 -0.02 3.26 16 33 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.06 2.66 6.93 -2.39 -0.02 2.64 16 Total: -1.00 -79.38 280.00 2.71 -76.67 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.43 Total: 11.35 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 3.68 Total: -4.40 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.95 Total: -85.70 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.49 Total: -46.89 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.38 2.71 -76.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232556377.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.253 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds