Wall clock time and date at job start Mon Mar 30 2020 03:35:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09006 * 109.50559 * 2 1
4 4 C 1.53122 * 109.50626 * 239.87894 * 2 1 3
5 5 C 1.53119 * 109.15803 * 297.71684 * 4 2 1
6 6 C 1.53037 * 109.27736 * 302.34475 * 5 4 2
7 7 N 1.46847 * 109.52846 * 59.17770 * 6 5 4
8 8 C 1.46894 * 111.00156 * 174.16269 * 7 6 5
9 9 C 1.50702 * 109.47135 * 294.21203 * 8 7 6
10 10 H 1.08005 * 120.00065 * 359.97438 * 9 8 7
11 11 C 1.37880 * 120.00236 * 180.02562 * 9 8 7
12 12 N 1.31513 * 119.99599 * 359.97438 * 11 9 8
13 13 Si 1.86796 * 120.00087 * 180.02562 * 11 9 8
14 14 H 1.48499 * 109.47287 * 89.99726 * 13 11 9
15 15 H 1.48498 * 109.46817 * 209.99839 * 13 11 9
16 16 H 1.48501 * 109.47213 * 329.99540 * 13 11 9
17 17 C 1.46848 * 111.19535 * 298.26260 * 7 6 5
18 18 H 1.08994 * 109.45508 * 301.72356 * 17 7 6
19 19 C 1.50706 * 109.45661 * 181.75416 * 17 7 6
20 20 O 1.20818 * 120.00197 * 339.66973 * 19 17 7
21 21 O 1.34230 * 119.99763 * 159.94486 * 19 17 7
22 22 H 1.09003 * 109.47134 * 299.92803 * 1 2 3
23 23 H 1.09003 * 109.47316 * 59.92052 * 1 2 3
24 24 H 1.08993 * 109.47684 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.51938 * 57.62044 * 4 2 1
26 26 H 1.08995 * 109.52551 * 177.74705 * 4 2 1
27 27 H 1.08996 * 109.50255 * 62.28233 * 5 4 2
28 28 H 1.08999 * 109.50015 * 182.40453 * 5 4 2
29 29 H 1.08993 * 109.46200 * 179.20125 * 6 5 4
30 30 H 1.09010 * 109.46056 * 299.17566 * 6 5 4
31 31 H 1.08999 * 109.47560 * 54.21047 * 8 7 6
32 32 H 1.09000 * 109.47011 * 174.21625 * 8 7 6
33 33 H 0.97001 * 119.99538 * 179.97438 * 12 11 9
34 34 H 0.96692 * 116.99954 * 180.02562 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0412 -0.7243 -1.2484
5 6 1.5749 -2.1823 -1.2099
6 6 2.0844 -2.8419 0.0736
7 7 1.5675 -2.1129 1.2388
8 6 1.9222 -2.7985 2.4886
9 6 1.2170 -4.1290 2.5493
10 1 0.5696 -4.4345 1.7406
11 6 1.3974 -4.9558 3.6379
12 7 2.1852 -4.5836 4.6229
13 14 0.5238 -6.6052 3.7128
14 1 1.3803 -7.6477 3.0925
15 1 0.2588 -6.9610 5.1300
16 1 -0.7624 -6.5181 2.9756
17 6 2.0409 -0.7229 1.2483
18 1 3.1308 -0.7106 1.2546
19 6 1.5238 -0.0249 2.4798
20 8 0.5650 -0.4671 3.0672
21 8 2.1250 1.0912 2.9210
22 1 -0.3633 0.5127 0.8907
23 1 -0.3634 0.5151 -0.8893
24 1 -0.3634 -1.0276 -0.0005
25 1 1.6442 -0.2383 -2.1397
26 1 3.1304 -0.6897 -1.2692
27 1 0.4856 -2.2165 -1.2289
28 1 1.9716 -2.7141 -2.0747
29 1 1.7422 -3.8760 0.1109
30 1 3.1742 -2.8194 0.0855
31 1 3.0001 -2.9568 2.5229
32 1 1.6175 -2.1867 3.3377
33 1 2.3118 -5.1651 5.3889
34 1 1.7577 1.5032 3.7149
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235286611.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:29
Heat of formation + Delta-G solvation = -92.867723 kcal
Electronic energy + Delta-G solvation = -16870.811237 eV
Core-core repulsion = 14189.381889 eV
Total energy + Delta-G solvation = -2681.429348 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.27328 -38.11705 -35.57021 -34.04268 -32.07734 -31.37126 -27.55219 -26.43459
-24.54273 -23.00831 -21.38567 -20.55620 -18.30212 -17.48984 -16.40307 -16.15227
-15.33693 -15.14406 -14.32923 -14.29830 -13.63078 -13.30071 -13.07764 -12.69813
-12.47248 -12.13109 -11.56559 -11.37953 -11.32397 -10.99703 -10.82582 -10.72538
-10.59663 -10.49488 -10.18555 -10.01246 -9.85408 -9.39838 -9.10029 -8.36145
-7.29240 -5.97398 -3.97157 2.79900 3.34868 3.40613 3.41491 3.46227
4.45019 4.78844 4.96227 5.15315 5.22145 5.38694 5.52830 5.54500
5.80345 5.87730 5.90668 5.99727 6.06786 6.18768 6.20868 6.28469
6.38675 6.62437 6.71085 6.85784 6.95780 7.29255 7.31067 7.80654
8.11100 8.16397 8.43243 8.59220 9.08178 9.65246 11.14184
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.028527 B = 0.009579 C = 0.007963
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 981.294392 B = 2922.363513 C = 3515.319075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.077 4.077
3 H 0.073 0.927
4 C -0.111 4.111
5 C -0.122 4.122
6 C 0.066 3.934
7 N -0.514 5.514
8 C 0.181 3.819
9 C -0.499 4.499
10 H 0.064 0.936
11 C 0.054 3.946
12 N -0.900 5.900
13 Si 0.898 3.102
14 H -0.282 1.282
15 H -0.287 1.287
16 H -0.273 1.273
17 C 0.101 3.899
18 H 0.059 0.941
19 C 0.477 3.523
20 O -0.475 6.475
21 O -0.529 6.529
22 H 0.047 0.953
23 H 0.046 0.954
24 H 0.080 0.920
25 H 0.063 0.937
26 H 0.059 0.941
27 H 0.073 0.927
28 H 0.060 0.940
29 H 0.091 0.909
30 H 0.022 0.978
31 H -0.013 1.013
32 H 0.047 0.953
33 H 0.260 0.740
34 H 0.403 0.597
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.606 9.480 -9.497 13.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.096 4.096
3 H 0.091 0.909
4 C -0.149 4.149
5 C -0.160 4.160
6 C -0.061 4.061
7 N -0.240 5.240
8 C 0.056 3.944
9 C -0.537 4.537
10 H 0.082 0.918
11 C -0.147 4.147
12 N -0.540 5.540
13 Si 0.726 3.274
14 H -0.208 1.208
15 H -0.213 1.213
16 H -0.198 1.198
17 C -0.010 4.010
18 H 0.077 0.923
19 C 0.317 3.683
20 O -0.358 6.358
21 O -0.341 6.341
22 H 0.066 0.934
23 H 0.065 0.935
24 H 0.099 0.901
25 H 0.082 0.918
26 H 0.077 0.923
27 H 0.091 0.909
28 H 0.079 0.921
29 H 0.109 0.891
30 H 0.040 0.960
31 H 0.004 0.996
32 H 0.065 0.935
33 H 0.070 0.930
34 H 0.260 0.740
Dipole moment (debyes) X Y Z Total
from point charges 0.039 9.106 -9.529 13.180
hybrid contribution 0.318 -0.643 0.947 1.188
sum 0.357 8.463 -8.582 12.058
Atomic orbital electron populations
1.21809 0.94022 1.03823 1.00279 1.21104 0.97344 0.98109 0.93018
0.90905 1.21585 1.00222 0.96404 0.96645 1.21724 1.02016 0.94843
0.97439 1.21999 0.96182 0.99093 0.88856 1.61933 1.59022 0.97784
1.05311 1.19998 0.93980 0.94617 0.85777 1.21058 1.27158 1.00817
1.04704 0.91832 1.24976 0.95583 0.98578 0.95561 1.69963 1.37976
1.37356 1.08662 0.86490 0.80032 0.83697 0.77147 1.20821 1.21321
1.19756 1.21129 0.97820 0.92303 0.89699 0.92303 1.23332 0.81399
0.77962 0.85644 1.90756 1.25988 1.62976 1.56122 1.84520 1.60788
1.41153 1.47622 0.93410 0.93488 0.90120 0.91820 0.92254 0.90875
0.92102 0.89105 0.95971 0.99564 0.93461 0.93033 0.73951
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.15 8.48 37.15 0.32 -1.83 16
2 C -0.08 -1.13 2.74 -90.54 -0.25 -1.38 16
3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
4 C -0.11 -1.43 5.51 -26.61 -0.15 -1.58 16
5 C -0.12 -1.78 5.74 -26.65 -0.15 -1.93 16
6 C 0.07 1.25 5.29 -3.83 -0.02 1.23 16
7 N -0.51 -11.16 3.53 -229.52 -0.81 -11.97 16
8 C 0.18 4.87 4.31 -4.98 -0.02 4.85 16
9 C -0.50 -14.38 8.43 -34.44 -0.29 -14.67 16
10 H 0.06 1.80 7.12 -52.48 -0.37 1.42 16
11 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16
12 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16
13 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16
14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
16 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16
17 C 0.10 1.87 2.05 -68.87 -0.14 1.73 16
18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
19 C 0.48 9.24 5.46 36.01 0.20 9.44 16
20 O -0.47 -11.04 15.09 -18.74 -0.28 -11.32 16
21 O -0.53 -8.08 13.42 -39.26 -0.53 -8.61 16
22 H 0.05 0.77 6.98 -51.93 -0.36 0.41 16
23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
24 H 0.08 1.39 6.01 -51.93 -0.31 1.08 16
25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.07 1.10 6.58 -51.93 -0.34 0.76 16
28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
29 H 0.09 1.86 6.70 -51.93 -0.35 1.51 16
30 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16
31 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16
32 H 0.05 1.40 5.43 -51.93 -0.28 1.12 16
33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
34 H 0.40 4.39 9.10 45.56 0.41 4.81 16
LS Contribution 270.99 15.07 4.08 4.08
Total: -1.00 -33.14 270.99 -6.55 -39.69
By element:
Atomic # 1 Polarization: 4.55 SS G_CDS: -4.12 Total: 0.43 kcal
Atomic # 6 Polarization: -2.06 SS G_CDS: -0.61 Total: -2.67 kcal
Atomic # 7 Polarization: -38.71 SS G_CDS: -0.07 Total: -38.79 kcal
Atomic # 8 Polarization: -19.12 SS G_CDS: -0.81 Total: -19.93 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -33.14 -6.55 -39.69 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235286611.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.182 kcal
(2) G-P(sol) polarization free energy of solvation -33.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.320 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.868 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds