Wall clock time and date at job start Mon Mar 30 2020 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.50559 * 2 1 4 4 C 1.53122 * 109.50626 * 239.87894 * 2 1 3 5 5 C 1.53119 * 109.15803 * 297.71684 * 4 2 1 6 6 C 1.53037 * 109.27736 * 302.34475 * 5 4 2 7 7 N 1.46847 * 109.52846 * 59.17770 * 6 5 4 8 8 C 1.46894 * 111.00156 * 174.16269 * 7 6 5 9 9 C 1.50702 * 109.47135 * 294.21203 * 8 7 6 10 10 H 1.08005 * 120.00065 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00236 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99599 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00087 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47287 * 89.99726 * 13 11 9 15 15 H 1.48498 * 109.46817 * 209.99839 * 13 11 9 16 16 H 1.48501 * 109.47213 * 329.99540 * 13 11 9 17 17 C 1.46848 * 111.19535 * 298.26260 * 7 6 5 18 18 H 1.08994 * 109.45508 * 301.72356 * 17 7 6 19 19 C 1.50706 * 109.45661 * 181.75416 * 17 7 6 20 20 O 1.20818 * 120.00197 * 339.66973 * 19 17 7 21 21 O 1.34230 * 119.99763 * 159.94486 * 19 17 7 22 22 H 1.09003 * 109.47134 * 299.92803 * 1 2 3 23 23 H 1.09003 * 109.47316 * 59.92052 * 1 2 3 24 24 H 1.08993 * 109.47684 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.51938 * 57.62044 * 4 2 1 26 26 H 1.08995 * 109.52551 * 177.74705 * 4 2 1 27 27 H 1.08996 * 109.50255 * 62.28233 * 5 4 2 28 28 H 1.08999 * 109.50015 * 182.40453 * 5 4 2 29 29 H 1.08993 * 109.46200 * 179.20125 * 6 5 4 30 30 H 1.09010 * 109.46056 * 299.17566 * 6 5 4 31 31 H 1.08999 * 109.47560 * 54.21047 * 8 7 6 32 32 H 1.09000 * 109.47011 * 174.21625 * 8 7 6 33 33 H 0.97001 * 119.99538 * 179.97438 * 12 11 9 34 34 H 0.96692 * 116.99954 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2484 5 6 1.5749 -2.1823 -1.2099 6 6 2.0844 -2.8419 0.0736 7 7 1.5675 -2.1129 1.2388 8 6 1.9222 -2.7985 2.4886 9 6 1.2170 -4.1290 2.5493 10 1 0.5696 -4.4345 1.7406 11 6 1.3974 -4.9558 3.6379 12 7 2.1852 -4.5836 4.6229 13 14 0.5238 -6.6052 3.7128 14 1 1.3803 -7.6477 3.0925 15 1 0.2588 -6.9610 5.1300 16 1 -0.7624 -6.5181 2.9756 17 6 2.0409 -0.7229 1.2483 18 1 3.1308 -0.7106 1.2546 19 6 1.5238 -0.0249 2.4798 20 8 0.5650 -0.4671 3.0672 21 8 2.1250 1.0912 2.9210 22 1 -0.3633 0.5127 0.8907 23 1 -0.3634 0.5151 -0.8893 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6442 -0.2383 -2.1397 26 1 3.1304 -0.6897 -1.2692 27 1 0.4856 -2.2165 -1.2289 28 1 1.9716 -2.7141 -2.0747 29 1 1.7422 -3.8760 0.1109 30 1 3.1742 -2.8194 0.0855 31 1 3.0001 -2.9568 2.5229 32 1 1.6175 -2.1867 3.3377 33 1 2.3118 -5.1651 5.3889 34 1 1.7577 1.5032 3.7149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235286611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:29 Heat of formation + Delta-G solvation = -92.867723 kcal Electronic energy + Delta-G solvation = -16870.811237 eV Core-core repulsion = 14189.381889 eV Total energy + Delta-G solvation = -2681.429348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27328 -38.11705 -35.57021 -34.04268 -32.07734 -31.37126 -27.55219 -26.43459 -24.54273 -23.00831 -21.38567 -20.55620 -18.30212 -17.48984 -16.40307 -16.15227 -15.33693 -15.14406 -14.32923 -14.29830 -13.63078 -13.30071 -13.07764 -12.69813 -12.47248 -12.13109 -11.56559 -11.37953 -11.32397 -10.99703 -10.82582 -10.72538 -10.59663 -10.49488 -10.18555 -10.01246 -9.85408 -9.39838 -9.10029 -8.36145 -7.29240 -5.97398 -3.97157 2.79900 3.34868 3.40613 3.41491 3.46227 4.45019 4.78844 4.96227 5.15315 5.22145 5.38694 5.52830 5.54500 5.80345 5.87730 5.90668 5.99727 6.06786 6.18768 6.20868 6.28469 6.38675 6.62437 6.71085 6.85784 6.95780 7.29255 7.31067 7.80654 8.11100 8.16397 8.43243 8.59220 9.08178 9.65246 11.14184 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028527 B = 0.009579 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.294392 B = 2922.363513 C = 3515.319075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.077 4.077 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.122 4.122 6 C 0.066 3.934 7 N -0.514 5.514 8 C 0.181 3.819 9 C -0.499 4.499 10 H 0.064 0.936 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.898 3.102 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.101 3.899 18 H 0.059 0.941 19 C 0.477 3.523 20 O -0.475 6.475 21 O -0.529 6.529 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.022 0.978 31 H -0.013 1.013 32 H 0.047 0.953 33 H 0.260 0.740 34 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 9.480 -9.497 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.160 4.160 6 C -0.061 4.061 7 N -0.240 5.240 8 C 0.056 3.944 9 C -0.537 4.537 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.726 3.274 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.010 4.010 18 H 0.077 0.923 19 C 0.317 3.683 20 O -0.358 6.358 21 O -0.341 6.341 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.040 0.960 31 H 0.004 0.996 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.039 9.106 -9.529 13.180 hybrid contribution 0.318 -0.643 0.947 1.188 sum 0.357 8.463 -8.582 12.058 Atomic orbital electron populations 1.21809 0.94022 1.03823 1.00279 1.21104 0.97344 0.98109 0.93018 0.90905 1.21585 1.00222 0.96404 0.96645 1.21724 1.02016 0.94843 0.97439 1.21999 0.96182 0.99093 0.88856 1.61933 1.59022 0.97784 1.05311 1.19998 0.93980 0.94617 0.85777 1.21058 1.27158 1.00817 1.04704 0.91832 1.24976 0.95583 0.98578 0.95561 1.69963 1.37976 1.37356 1.08662 0.86490 0.80032 0.83697 0.77147 1.20821 1.21321 1.19756 1.21129 0.97820 0.92303 0.89699 0.92303 1.23332 0.81399 0.77962 0.85644 1.90756 1.25988 1.62976 1.56122 1.84520 1.60788 1.41153 1.47622 0.93410 0.93488 0.90120 0.91820 0.92254 0.90875 0.92102 0.89105 0.95971 0.99564 0.93461 0.93033 0.73951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.48 37.15 0.32 -1.83 16 2 C -0.08 -1.13 2.74 -90.54 -0.25 -1.38 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.11 -1.43 5.51 -26.61 -0.15 -1.58 16 5 C -0.12 -1.78 5.74 -26.65 -0.15 -1.93 16 6 C 0.07 1.25 5.29 -3.83 -0.02 1.23 16 7 N -0.51 -11.16 3.53 -229.52 -0.81 -11.97 16 8 C 0.18 4.87 4.31 -4.98 -0.02 4.85 16 9 C -0.50 -14.38 8.43 -34.44 -0.29 -14.67 16 10 H 0.06 1.80 7.12 -52.48 -0.37 1.42 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 13 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 17 C 0.10 1.87 2.05 -68.87 -0.14 1.73 16 18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 19 C 0.48 9.24 5.46 36.01 0.20 9.44 16 20 O -0.47 -11.04 15.09 -18.74 -0.28 -11.32 16 21 O -0.53 -8.08 13.42 -39.26 -0.53 -8.61 16 22 H 0.05 0.77 6.98 -51.93 -0.36 0.41 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.08 1.39 6.01 -51.93 -0.31 1.08 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 1.10 6.58 -51.93 -0.34 0.76 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.86 6.70 -51.93 -0.35 1.51 16 30 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 31 H -0.01 -0.38 8.12 -51.93 -0.42 -0.80 16 32 H 0.05 1.40 5.43 -51.93 -0.28 1.12 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.40 4.39 9.10 45.56 0.41 4.81 16 LS Contribution 270.99 15.07 4.08 4.08 Total: -1.00 -33.14 270.99 -6.55 -39.69 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.12 Total: 0.43 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.61 Total: -2.67 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.07 Total: -38.79 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.81 Total: -19.93 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.14 -6.55 -39.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235286611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.182 kcal (2) G-P(sol) polarization free energy of solvation -33.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds