Wall clock time and date at job start Mon Mar 30 2020 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.50559 * 2 1 4 4 C 1.53122 * 109.50626 * 239.87894 * 2 1 3 5 5 C 1.53119 * 109.15803 * 297.71684 * 4 2 1 6 6 C 1.53037 * 109.27736 * 302.34475 * 5 4 2 7 7 N 1.46847 * 109.52846 * 59.17770 * 6 5 4 8 8 C 1.46894 * 111.00156 * 174.16269 * 7 6 5 9 9 C 1.50702 * 109.47135 * 294.21203 * 8 7 6 10 10 H 1.08005 * 120.00065 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00236 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99599 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00087 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47287 * 89.99726 * 13 11 9 15 15 H 1.48498 * 109.46817 * 209.99839 * 13 11 9 16 16 H 1.48501 * 109.47213 * 329.99540 * 13 11 9 17 17 C 1.46848 * 111.19535 * 298.26260 * 7 6 5 18 18 H 1.08994 * 109.45508 * 301.72356 * 17 7 6 19 19 C 1.50706 * 109.45661 * 181.75416 * 17 7 6 20 20 O 1.20818 * 120.00197 * 339.66973 * 19 17 7 21 21 O 1.34230 * 119.99763 * 159.94486 * 19 17 7 22 22 H 1.09003 * 109.47134 * 299.92803 * 1 2 3 23 23 H 1.09003 * 109.47316 * 59.92052 * 1 2 3 24 24 H 1.08993 * 109.47684 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.51938 * 57.62044 * 4 2 1 26 26 H 1.08995 * 109.52551 * 177.74705 * 4 2 1 27 27 H 1.08996 * 109.50255 * 62.28233 * 5 4 2 28 28 H 1.08999 * 109.50015 * 182.40453 * 5 4 2 29 29 H 1.08993 * 109.46200 * 179.20125 * 6 5 4 30 30 H 1.09010 * 109.46056 * 299.17566 * 6 5 4 31 31 H 1.08999 * 109.47560 * 54.21047 * 8 7 6 32 32 H 1.09000 * 109.47011 * 174.21625 * 8 7 6 33 33 H 0.97001 * 119.99538 * 179.97438 * 12 11 9 34 34 H 0.96692 * 116.99954 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7243 -1.2484 5 6 1.5749 -2.1823 -1.2099 6 6 2.0844 -2.8419 0.0736 7 7 1.5675 -2.1129 1.2388 8 6 1.9222 -2.7985 2.4886 9 6 1.2170 -4.1290 2.5493 10 1 0.5696 -4.4345 1.7406 11 6 1.3974 -4.9558 3.6379 12 7 2.1852 -4.5836 4.6229 13 14 0.5238 -6.6052 3.7128 14 1 1.3803 -7.6477 3.0925 15 1 0.2588 -6.9610 5.1300 16 1 -0.7624 -6.5181 2.9756 17 6 2.0409 -0.7229 1.2483 18 1 3.1308 -0.7106 1.2546 19 6 1.5238 -0.0249 2.4798 20 8 0.5650 -0.4671 3.0672 21 8 2.1250 1.0912 2.9210 22 1 -0.3633 0.5127 0.8907 23 1 -0.3634 0.5151 -0.8893 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6442 -0.2383 -2.1397 26 1 3.1304 -0.6897 -1.2692 27 1 0.4856 -2.2165 -1.2289 28 1 1.9716 -2.7141 -2.0747 29 1 1.7422 -3.8760 0.1109 30 1 3.1742 -2.8194 0.0855 31 1 3.0001 -2.9568 2.5229 32 1 1.6175 -2.1867 3.3377 33 1 2.3118 -5.1651 5.3889 34 1 1.7577 1.5032 3.7149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235286611.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:29 Heat of formation + Delta-G solvation = -116.918379 kcal Electronic energy + Delta-G solvation = -16871.854152 eV Core-core repulsion = 14189.381889 eV Total energy + Delta-G solvation = -2682.472263 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.77263 -39.54127 -37.04637 -35.81137 -34.06031 -32.70201 -29.40460 -27.85824 -26.17973 -24.62865 -23.00611 -22.07008 -19.62352 -18.98230 -18.49555 -17.71733 -16.93018 -16.68397 -16.13541 -15.76048 -15.09131 -14.82794 -14.37493 -14.30907 -14.07794 -13.84313 -13.23354 -12.87577 -12.76151 -12.72795 -12.51512 -12.34482 -12.09814 -11.99184 -11.87649 -11.50851 -11.35236 -10.99641 -10.92644 -10.56873 -9.04472 -8.21406 -6.29928 1.27409 1.37551 1.40549 1.51872 2.04184 2.38929 3.11364 3.19496 3.72090 3.95848 4.01830 4.20228 4.28609 4.47243 4.61799 4.70128 4.72462 4.84992 4.92571 5.07351 5.08959 5.14620 5.23909 5.29931 5.33123 5.47562 5.60635 5.66147 5.67807 6.04142 6.30701 6.52893 6.84266 7.09005 7.38031 8.90574 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028527 B = 0.009579 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.294392 B = 2922.363513 C = 3515.319075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 H 0.100 0.900 4 C -0.105 4.105 5 C -0.114 4.114 6 C 0.063 3.937 7 N -0.521 5.521 8 C 0.197 3.803 9 C -0.515 4.515 10 H 0.063 0.937 11 C -0.003 4.003 12 N -0.938 5.938 13 Si 0.971 3.029 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.266 1.266 17 C 0.091 3.909 18 H 0.063 0.937 19 C 0.479 3.521 20 O -0.524 6.524 21 O -0.513 6.513 22 H 0.028 0.972 23 H 0.081 0.919 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.021 0.979 31 H -0.044 1.044 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.478 10.091 -11.675 15.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 H 0.119 0.881 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.064 4.064 7 N -0.248 5.248 8 C 0.071 3.929 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.200 4.200 12 N -0.578 5.578 13 Si 0.796 3.204 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.190 1.190 17 C -0.019 4.019 18 H 0.081 0.919 19 C 0.321 3.679 20 O -0.411 6.411 21 O -0.327 6.327 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.073 0.927 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.039 0.961 31 H -0.027 1.027 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -0.072 9.754 -11.730 15.256 hybrid contribution 0.405 -0.735 1.650 1.851 sum 0.333 9.019 -10.080 13.530 Atomic orbital electron populations 1.21756 0.94389 1.02321 1.01005 1.21211 0.96934 0.99205 0.91645 0.88147 1.21611 1.01066 0.94768 0.96804 1.21681 1.01718 0.96245 0.95478 1.22081 0.96142 0.98217 0.90004 1.61798 1.59692 0.99360 1.03929 1.19573 0.91620 0.94063 0.87609 1.21396 1.27216 1.01900 1.04847 0.91885 1.25953 0.96282 1.02771 0.95042 1.70102 1.39422 1.38984 1.09340 0.85351 0.79019 0.78755 0.77308 1.19301 1.20920 1.19021 1.21408 0.98073 0.90770 0.91603 0.91906 1.23596 0.80577 0.78255 0.85482 1.90737 1.28280 1.64503 1.57608 1.84458 1.59941 1.39647 1.48617 0.95308 0.90057 0.92745 0.88282 0.91081 0.91354 0.89293 0.91644 0.96085 1.02659 0.96700 0.92836 0.71605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.48 71.98 0.61 -3.27 16 2 C -0.07 -1.89 2.74 -10.74 -0.03 -1.92 16 3 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 4 C -0.11 -2.28 5.51 30.67 0.17 -2.11 16 5 C -0.11 -3.02 5.74 30.65 0.18 -2.84 16 6 C 0.06 2.37 5.29 86.33 0.46 2.83 16 7 N -0.52 -23.14 3.53 -880.06 -3.11 -26.25 16 8 C 0.20 11.14 4.31 85.56 0.37 11.51 16 9 C -0.52 -30.70 8.43 25.60 0.22 -30.49 16 10 H 0.06 3.66 7.12 -2.91 -0.02 3.64 16 11 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 12 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 13 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 17 C 0.09 3.35 2.05 44.19 0.09 3.44 16 18 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 19 C 0.48 18.74 5.46 71.24 0.39 19.13 16 20 O -0.52 -25.26 15.09 21.99 0.33 -24.93 16 21 O -0.51 -15.19 13.42 -51.41 -0.69 -15.88 16 22 H 0.03 0.90 6.98 -2.39 -0.02 0.88 16 23 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.83 6.01 -2.39 -0.01 1.81 16 25 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.91 6.58 -2.39 -0.02 1.89 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 2.75 6.70 -2.39 -0.02 2.73 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H -0.04 -2.68 8.12 -2.39 -0.02 -2.70 16 32 H 0.02 0.94 5.43 -2.39 -0.01 0.93 16 33 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.42 8.82 9.10 -74.06 -0.67 8.14 16 Total: -1.00 -74.91 270.99 2.18 -72.73 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.42 Total: 8.40 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 2.91 Total: -3.46 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -2.82 Total: -85.10 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.36 Total: -40.81 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.91 2.18 -72.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235286611.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.184 kcal (2) G-P(sol) polarization free energy of solvation -74.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds