Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47210 * 240.00041 * 2 1 3 5 5 H 1.08003 * 120.00212 * 335.25454 * 4 2 1 6 6 C 1.37882 * 120.00099 * 155.25335 * 4 2 1 7 7 N 1.31507 * 120.00018 * 355.14968 * 6 4 2 8 8 Si 1.86800 * 119.99735 * 175.15448 * 6 4 2 9 9 H 1.48506 * 109.47298 * 60.00161 * 8 6 4 10 10 H 1.48501 * 109.47226 * 299.99653 * 8 6 4 11 11 H 1.48507 * 109.47110 * 179.97438 * 8 6 4 12 12 N 1.46501 * 109.47416 * 119.99922 * 2 1 3 13 13 C 1.34775 * 120.00056 * 275.00104 * 12 2 1 14 14 O 1.21277 * 120.00203 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00061 * 180.02562 * 13 12 2 16 16 H 1.09004 * 110.27472 * 305.63626 * 15 13 12 17 17 C 1.54951 * 110.31255 * 67.83366 * 15 13 12 18 18 C 1.55303 * 100.94399 * 155.36137 * 17 15 13 19 19 C 1.54381 * 102.25102 * 325.86754 * 18 17 15 20 20 H 1.09000 * 109.90262 * 261.79732 * 19 18 17 21 21 C 1.53001 * 109.83117 * 140.87322 * 19 18 17 22 22 O 1.43229 * 107.59076 * 21.35651 * 19 18 17 23 23 H 1.09002 * 109.46883 * 175.03375 * 1 2 3 24 24 H 1.08998 * 109.47029 * 295.02684 * 1 2 3 25 25 H 1.08998 * 109.47844 * 55.03545 * 1 2 3 26 26 H 0.97000 * 120.00233 * 5.13133 * 7 6 4 27 27 H 0.97002 * 119.99596 * 95.00283 * 12 2 1 28 28 H 1.09000 * 111.12115 * 273.28101 * 17 15 13 29 29 H 1.09000 * 111.12619 * 37.43820 * 17 15 13 30 30 H 1.08997 * 110.84863 * 207.67647 * 18 17 15 31 31 H 1.08997 * 111.02347 * 84.13238 * 18 17 15 32 32 H 1.08998 * 109.47099 * 300.40812 * 21 19 18 33 33 H 1.09006 * 109.47148 * 60.41096 * 21 19 18 34 34 H 1.08996 * 109.47422 * 180.40897 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4115 -1.4456 -1.7209 6 6 3.2845 -0.4218 -1.7302 7 7 4.0019 0.5398 -1.1915 8 14 3.9618 -1.3965 -3.1726 9 1 3.0627 -1.2370 -4.3437 10 1 4.0450 -2.8327 -2.8042 11 1 5.3163 -0.8942 -3.5171 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6500 -0.7284 3.5874 16 1 2.0448 -1.6128 3.7870 17 6 4.1385 -1.1214 3.4109 18 6 4.5988 -1.2053 4.8918 19 6 3.7595 -0.0946 5.5591 20 1 4.3557 0.8126 5.6576 21 6 3.2886 -0.5582 6.9391 22 8 2.6275 0.1568 4.7185 23 1 -0.3633 -1.0238 -0.0890 24 1 -0.3633 0.4347 0.9312 25 1 -0.3635 0.5889 -0.8421 26 1 3.6831 0.9959 -0.3970 27 1 2.2491 -1.6318 1.1525 28 1 4.2335 -2.0872 2.9147 29 1 4.6874 -0.3492 2.8720 30 1 5.6641 -0.9921 4.9795 31 1 4.3633 -2.1796 5.3199 32 1 2.6849 -1.4595 6.8331 33 1 4.1545 -0.7724 7.5655 34 1 2.6908 0.2271 7.4018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251989672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = -104.055002 kcal Electronic energy + Delta-G solvation = -16299.945813 eV Core-core repulsion = 13618.031348 eV Total energy + Delta-G solvation = -2681.914465 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84277 -37.96676 -34.84475 -32.39362 -32.11275 -31.43665 -29.34740 -26.38655 -24.70189 -22.53132 -21.37226 -20.75549 -19.34558 -17.61215 -16.94084 -15.98638 -15.25484 -14.81322 -14.20745 -13.84693 -13.76817 -13.40833 -13.21055 -13.12224 -12.55529 -12.00095 -11.84619 -11.65172 -11.39337 -11.19905 -10.98391 -10.89428 -10.82670 -10.80421 -10.23846 -10.03133 -9.60707 -9.08575 -8.61077 -8.47863 -7.81525 -6.54846 -4.35542 3.32636 3.34874 3.42766 3.54760 3.67579 4.35666 4.40192 4.61357 4.77711 5.03461 5.21151 5.23314 5.31012 5.38679 5.55244 5.67525 5.71569 5.78899 5.93694 6.01760 6.13250 6.26121 6.38738 6.55259 6.62846 7.06230 7.14884 7.27624 7.70700 7.90915 8.25462 8.60910 8.80224 9.24745 9.45048 10.81748 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035477 B = 0.007285 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.050507 B = 3842.522113 C = 4322.793833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.236 3.764 3 H 0.053 0.947 4 C -0.607 4.607 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.889 5.889 8 Si 1.070 2.930 9 H -0.286 1.286 10 H -0.286 1.286 11 H -0.282 1.282 12 N -0.702 5.702 13 C 0.497 3.503 14 O -0.547 6.547 15 C 0.061 3.939 16 H 0.085 0.915 17 C -0.142 4.142 18 C -0.149 4.149 19 C 0.071 3.929 20 H 0.079 0.921 21 C -0.160 4.160 22 O -0.351 6.351 23 H 0.040 0.960 24 H 0.031 0.969 25 H 0.051 0.949 26 H 0.277 0.723 27 H 0.385 0.615 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -6.825 10.651 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.136 3.864 3 H 0.071 0.929 4 C -0.646 4.646 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.522 5.522 8 Si 0.897 3.103 9 H -0.212 1.212 10 H -0.212 1.212 11 H -0.207 1.207 12 N -0.353 5.353 13 C 0.280 3.720 14 O -0.425 6.425 15 C 0.000 4.000 16 H 0.103 0.897 17 C -0.180 4.180 18 C -0.187 4.187 19 C 0.013 3.987 20 H 0.097 0.903 21 C -0.217 4.217 22 O -0.269 6.269 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.218 0.782 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.347 -5.890 9.678 11.570 hybrid contribution -1.025 -0.597 1.079 1.604 sum 1.322 -6.487 10.757 12.631 Atomic orbital electron populations 1.21993 0.98533 0.99897 0.99436 1.18868 0.89964 0.95033 0.82521 0.92899 1.22113 1.03913 1.27280 1.11296 0.92542 1.26031 0.93973 0.95834 1.02030 1.70741 1.41016 1.19145 1.21329 0.83538 0.76444 0.75287 0.75012 1.21179 1.21217 1.20692 1.47615 1.64675 1.13548 1.09453 1.20461 0.79011 0.87862 0.84638 1.90629 1.50773 1.15994 1.85084 1.22963 0.97151 0.92765 0.87153 0.89725 1.23196 0.94361 1.03570 0.96907 1.23186 1.00888 0.99356 0.95230 1.22764 0.87413 0.97809 0.90700 0.90345 1.22132 1.01581 1.01860 0.96145 1.88544 1.45058 1.59011 1.34302 0.94136 0.94943 0.93044 0.91072 0.78170 0.89224 0.89541 0.89948 0.90368 0.92292 0.91686 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.46 37.15 0.35 -2.81 16 2 C 0.24 5.97 2.28 -69.09 -0.16 5.82 16 3 H 0.05 1.55 6.11 -51.93 -0.32 1.23 16 4 C -0.61 -16.06 8.50 -34.44 -0.29 -16.35 16 5 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 6 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 7 N -0.89 -26.00 13.63 55.43 0.76 -25.24 16 8 Si 1.07 23.58 29.91 -169.99 -5.08 18.49 16 9 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.29 -5.93 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.70 -15.63 5.07 -54.94 -0.28 -15.91 16 13 C 0.50 11.12 7.14 -10.99 -0.08 11.04 16 14 O -0.55 -14.65 16.21 -13.76 -0.22 -14.88 16 15 C 0.06 1.07 3.86 -26.86 -0.10 0.96 16 16 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.14 -2.11 6.56 -24.48 -0.16 -2.27 16 18 C -0.15 -1.75 6.55 -24.79 -0.16 -1.91 16 19 C 0.07 0.97 4.16 -26.01 -0.11 0.86 16 20 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 21 C -0.16 -1.73 9.44 37.16 0.35 -1.38 16 22 O -0.35 -6.46 10.27 -54.56 -0.56 -7.02 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.28 8.41 6.66 -40.82 -0.27 8.14 16 27 H 0.39 7.67 8.59 -40.82 -0.35 7.31 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 286.29 15.07 4.31 4.31 Total: -1.00 -32.11 286.29 -6.73 -38.85 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.20 Total: 6.71 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.46 Total: -5.31 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.48 Total: -41.15 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.78 Total: -21.90 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.08 Total: 18.49 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.11 -6.73 -38.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251989672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.210 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds