Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46910 * 2 1 4 4 C 1.50699 * 109.47210 * 240.00041 * 2 1 3 5 5 H 1.08003 * 120.00212 * 335.25454 * 4 2 1 6 6 C 1.37882 * 120.00099 * 155.25335 * 4 2 1 7 7 N 1.31507 * 120.00018 * 355.14968 * 6 4 2 8 8 Si 1.86800 * 119.99735 * 175.15448 * 6 4 2 9 9 H 1.48506 * 109.47298 * 60.00161 * 8 6 4 10 10 H 1.48501 * 109.47226 * 299.99653 * 8 6 4 11 11 H 1.48507 * 109.47110 * 179.97438 * 8 6 4 12 12 N 1.46501 * 109.47416 * 119.99922 * 2 1 3 13 13 C 1.34775 * 120.00056 * 275.00104 * 12 2 1 14 14 O 1.21277 * 120.00203 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00061 * 180.02562 * 13 12 2 16 16 H 1.09004 * 110.27472 * 305.63626 * 15 13 12 17 17 C 1.54951 * 110.31255 * 67.83366 * 15 13 12 18 18 C 1.55303 * 100.94399 * 155.36137 * 17 15 13 19 19 C 1.54381 * 102.25102 * 325.86754 * 18 17 15 20 20 H 1.09000 * 109.90262 * 261.79732 * 19 18 17 21 21 C 1.53001 * 109.83117 * 140.87322 * 19 18 17 22 22 O 1.43229 * 107.59076 * 21.35651 * 19 18 17 23 23 H 1.09002 * 109.46883 * 175.03375 * 1 2 3 24 24 H 1.08998 * 109.47029 * 295.02684 * 1 2 3 25 25 H 1.08998 * 109.47844 * 55.03545 * 1 2 3 26 26 H 0.97000 * 120.00233 * 5.13133 * 7 6 4 27 27 H 0.97002 * 119.99596 * 95.00283 * 12 2 1 28 28 H 1.09000 * 111.12115 * 273.28101 * 17 15 13 29 29 H 1.09000 * 111.12619 * 37.43820 * 17 15 13 30 30 H 1.08997 * 110.84863 * 207.67647 * 18 17 15 31 31 H 1.08997 * 111.02347 * 84.13238 * 18 17 15 32 32 H 1.08998 * 109.47099 * 300.40812 * 21 19 18 33 33 H 1.09006 * 109.47148 * 60.41096 * 21 19 18 34 34 H 1.08996 * 109.47422 * 180.40897 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4115 -1.4456 -1.7209 6 6 3.2845 -0.4218 -1.7302 7 7 4.0019 0.5398 -1.1915 8 14 3.9618 -1.3965 -3.1726 9 1 3.0627 -1.2370 -4.3437 10 1 4.0450 -2.8327 -2.8042 11 1 5.3163 -0.8942 -3.5171 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8591 1.1586 2.4115 15 6 2.6500 -0.7284 3.5874 16 1 2.0448 -1.6128 3.7870 17 6 4.1385 -1.1214 3.4109 18 6 4.5988 -1.2053 4.8918 19 6 3.7595 -0.0946 5.5591 20 1 4.3557 0.8126 5.6576 21 6 3.2886 -0.5582 6.9391 22 8 2.6275 0.1568 4.7185 23 1 -0.3633 -1.0238 -0.0890 24 1 -0.3633 0.4347 0.9312 25 1 -0.3635 0.5889 -0.8421 26 1 3.6831 0.9959 -0.3970 27 1 2.2491 -1.6318 1.1525 28 1 4.2335 -2.0872 2.9147 29 1 4.6874 -0.3492 2.8720 30 1 5.6641 -0.9921 4.9795 31 1 4.3633 -2.1796 5.3199 32 1 2.6849 -1.4595 6.8331 33 1 4.1545 -0.7724 7.5655 34 1 2.6908 0.2271 7.4018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251989672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = -126.341957 kcal Electronic energy + Delta-G solvation = -16300.912247 eV Core-core repulsion = 13618.031348 eV Total energy + Delta-G solvation = -2682.880900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.29532 -39.60879 -36.83776 -34.26344 -33.32145 -32.83487 -31.08333 -27.62759 -26.75899 -23.94992 -22.88428 -22.07489 -21.10050 -19.43982 -18.48030 -17.44229 -16.81538 -16.50067 -15.67071 -15.57155 -15.35830 -15.14750 -14.79579 -14.42802 -13.76410 -13.54600 -13.09215 -12.94844 -12.90311 -12.87457 -12.65792 -12.62132 -12.11627 -11.91175 -11.87652 -11.78071 -11.13373 -10.89452 -10.55400 -10.33497 -9.74099 -8.71193 -6.53089 1.57877 1.62156 1.71086 1.84100 2.15982 2.55757 2.96763 3.25545 3.46143 3.78657 3.82085 4.01485 4.12358 4.26308 4.40247 4.46661 4.65156 4.68368 4.69239 4.71844 4.81963 4.93067 4.99481 5.15098 5.17476 5.26549 5.31607 5.69705 5.91090 6.02139 6.10361 6.42719 6.93864 7.37190 7.47507 8.63521 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.035477 B = 0.007285 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.050507 B = 3842.522113 C = 4322.793833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.234 3.766 3 H 0.003 0.997 4 C -0.611 4.611 5 H 0.066 0.934 6 C -0.018 4.018 7 N -0.919 5.919 8 Si 1.121 2.879 9 H -0.271 1.271 10 H -0.258 1.258 11 H -0.291 1.291 12 N -0.695 5.695 13 C 0.488 3.512 14 O -0.601 6.601 15 C 0.068 3.932 16 H 0.120 0.880 17 C -0.142 4.142 18 C -0.133 4.133 19 C 0.056 3.944 20 H 0.070 0.930 21 C -0.152 4.152 22 O -0.387 6.387 23 H 0.062 0.938 24 H 0.026 0.974 25 H 0.052 0.948 26 H 0.255 0.745 27 H 0.400 0.600 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -9.779 11.300 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.133 3.867 3 H 0.021 0.979 4 C -0.649 4.649 5 H 0.084 0.916 6 C -0.219 4.219 7 N -0.554 5.554 8 Si 0.942 3.058 9 H -0.197 1.197 10 H -0.183 1.183 11 H -0.217 1.217 12 N -0.345 5.345 13 C 0.274 3.726 14 O -0.483 6.483 15 C 0.007 3.993 16 H 0.137 0.863 17 C -0.180 4.180 18 C -0.170 4.170 19 C -0.001 4.001 20 H 0.088 0.912 21 C -0.209 4.209 22 O -0.306 6.306 23 H 0.081 0.919 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.235 0.765 28 H 0.132 0.868 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.735 -8.888 10.351 13.915 hybrid contribution -1.202 0.389 0.926 1.566 sum 1.533 -8.499 11.277 14.204 Atomic orbital electron populations 1.21877 0.96426 1.01255 0.99302 1.18675 0.91606 0.92698 0.83735 0.97937 1.22348 1.03992 1.26960 1.11647 0.91555 1.27545 0.94550 0.95655 1.04158 1.70897 1.41911 1.21128 1.21503 0.82895 0.75418 0.75196 0.72300 1.19653 1.18296 1.21660 1.47156 1.64423 1.14046 1.08911 1.21392 0.77769 0.87366 0.86028 1.90594 1.53051 1.18557 1.86098 1.22958 0.99128 0.92558 0.84667 0.86298 1.23204 0.92028 1.03444 0.99280 1.23190 1.01521 1.00084 0.92211 1.23098 0.86647 0.98648 0.91696 0.91159 1.22089 1.02734 1.01672 0.94425 1.88512 1.47142 1.60104 1.34880 0.91888 0.95445 0.92847 0.93442 0.76460 0.86825 0.92964 0.88102 0.87230 0.91570 0.88790 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 9.46 71.98 0.68 -5.19 16 2 C 0.23 12.13 2.28 44.24 0.10 12.23 16 3 H 0.00 0.16 6.11 -2.39 -0.01 0.15 16 4 C -0.61 -32.16 8.50 25.60 0.22 -31.95 16 5 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 6 C -0.02 -0.95 5.45 84.66 0.46 -0.48 16 7 N -0.92 -55.37 13.63 21.45 0.29 -55.08 16 8 Si 1.12 46.45 29.91 68.60 2.05 48.50 16 9 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 10 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.69 -31.18 5.07 -446.12 -2.26 -33.44 16 13 C 0.49 22.34 7.14 87.66 0.63 22.97 16 14 O -0.60 -33.88 16.21 15.46 0.25 -33.63 16 15 C 0.07 2.30 3.86 30.51 0.12 2.42 16 16 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 17 C -0.14 -3.97 6.56 32.05 0.21 -3.76 16 18 C -0.13 -2.68 6.55 31.85 0.21 -2.47 16 19 C 0.06 1.44 4.16 31.06 0.13 1.57 16 20 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 21 C -0.15 -2.86 9.44 71.98 0.68 -2.18 16 22 O -0.39 -14.15 10.27 -130.50 -1.34 -15.49 16 23 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.26 16.34 6.66 -92.71 -0.62 15.72 16 27 H 0.40 15.53 8.59 -92.71 -0.80 14.74 16 28 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 1.82 8.05 -2.39 -0.02 1.80 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.11 1.59 7.85 -2.39 -0.02 1.57 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.18 286.29 2.86 -70.31 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.44 Total: 25.68 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 3.43 Total: -6.85 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -1.97 Total: -88.53 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.09 Total: -49.12 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.05 Total: 48.50 kcal Total: -73.18 2.86 -70.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251989672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.028 kcal (2) G-P(sol) polarization free energy of solvation -73.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds