Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47297 * 2 1 4 4 C 1.50698 * 109.47050 * 119.99988 * 2 1 3 5 5 O 1.21285 * 120.00170 * 332.43416 * 4 2 1 6 6 N 1.34781 * 119.99924 * 152.43745 * 4 2 1 7 7 C 1.47576 * 134.49120 * 174.60774 * 6 4 2 8 8 C 1.53948 * 86.11663 * 204.63292 * 7 6 4 9 9 C 1.52995 * 113.74325 * 221.94020 * 8 7 6 10 10 O 1.42903 * 109.47172 * 183.07756 * 9 8 7 11 11 C 1.34921 * 116.99767 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00565 * 359.97438 * 11 10 9 13 13 C 1.38637 * 119.99791 * 179.97438 * 11 10 9 14 14 N 1.31587 * 119.99927 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00421 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47237 * 89.99684 * 15 13 11 17 17 H 1.48498 * 109.47398 * 210.00016 * 15 13 11 18 18 H 1.48504 * 109.46800 * 330.00360 * 15 13 11 19 19 C 1.47927 * 134.50164 * 354.59763 * 6 4 2 20 20 H 1.09004 * 109.46635 * 300.00145 * 1 2 3 21 21 H 1.09004 * 109.46759 * 59.99869 * 1 2 3 22 22 H 1.08994 * 109.46922 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46937 * 240.00219 * 2 1 3 24 24 H 1.09005 * 109.47334 * 184.77257 * 3 2 1 25 25 H 1.09000 * 109.47129 * 304.77274 * 3 2 1 26 26 H 1.08997 * 109.47058 * 64.77225 * 3 2 1 27 27 H 1.08999 * 113.77089 * 90.33419 * 7 6 4 28 28 H 1.08996 * 113.77254 * 318.93352 * 7 6 4 29 29 H 1.09005 * 113.73779 * 90.73584 * 8 7 6 30 30 H 1.08998 * 109.47061 * 303.07662 * 9 8 7 31 31 H 1.09002 * 109.47535 * 63.07539 * 9 8 7 32 32 H 0.97003 * 119.99986 * 179.97438 * 14 13 11 33 33 H 1.09001 * 113.86401 * 41.10490 * 19 6 4 34 34 H 1.08990 * 113.77202 * 269.61166 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.3566 -0.7305 2.2374 6 7 3.2326 -1.3234 1.2119 7 6 4.0613 -2.0054 2.2248 8 6 5.2612 -1.6580 1.3251 9 6 6.2747 -2.7953 1.1836 10 8 7.3798 -2.3529 0.3929 11 6 8.3692 -3.2430 0.1708 12 1 8.3031 -4.2384 0.5845 13 6 9.4707 -2.8797 -0.5886 14 7 9.5511 -1.6670 -1.0931 15 14 10.8410 -4.1116 -0.8956 16 1 10.5504 -4.8765 -2.1348 17 1 12.1298 -3.3902 -1.0499 18 1 10.9319 -5.0474 0.2538 19 6 4.2483 -1.5829 0.1683 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1268 1.4437 -0.0855 25 1 1.6086 1.9804 -0.8441 26 1 1.7483 1.9310 0.9296 27 1 3.8667 -3.0750 2.3039 28 1 4.0766 -1.5020 3.1914 29 1 5.7263 -0.7015 1.5640 30 1 6.6296 -3.0908 2.1709 31 1 5.7990 -3.6477 0.6985 32 1 10.3220 -1.4127 -1.6241 33 1 4.4128 -0.7422 -0.5058 34 1 4.1085 -2.5285 -0.3553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260098813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -48.083392 kcal Electronic energy + Delta-G solvation = -15622.992200 eV Core-core repulsion = 12943.504847 eV Total energy + Delta-G solvation = -2679.487354 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.22400 -38.04506 -35.94806 -34.39009 -31.86195 -30.17359 -27.27838 -26.20590 -25.87810 -24.08318 -22.42621 -20.03433 -18.57780 -17.52729 -17.08116 -16.01014 -15.73423 -15.04532 -14.52675 -14.20370 -14.04029 -13.56636 -13.22608 -12.75376 -12.46711 -12.44029 -12.20479 -12.02855 -11.82876 -11.38751 -11.25606 -11.12922 -10.98331 -10.66648 -10.63698 -10.21044 -9.62646 -9.43318 -9.21161 -8.55576 -8.01844 -5.99844 -3.63986 2.71546 2.93582 3.28399 3.31538 3.35250 4.23450 4.40620 4.67343 4.76750 4.93653 5.14091 5.22880 5.28788 5.34132 5.50796 5.53667 5.64582 5.67397 5.69850 5.76659 5.79282 5.90330 5.97585 6.07585 6.13087 6.19186 6.46340 6.50777 6.68918 7.43296 7.83171 8.25815 8.38154 9.43876 10.10238 11.21069 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.053459 B = 0.004879 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.635657 B = 5737.140226 C = 6031.304444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.538 3.462 5 O -0.552 6.552 6 N -0.645 5.645 7 C 0.112 3.888 8 C -0.110 4.110 9 C 0.081 3.919 10 O -0.294 6.294 11 C -0.363 4.363 12 H 0.063 0.937 13 C 0.024 3.976 14 N -0.888 5.888 15 Si 0.925 3.075 16 H -0.281 1.281 17 H -0.283 1.283 18 H -0.275 1.275 19 C 0.111 3.889 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.085 0.915 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.864 1.990 0.972 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.328 3.672 5 O -0.431 6.431 6 N -0.380 5.380 7 C -0.010 4.010 8 C -0.129 4.129 9 C 0.003 3.997 10 O -0.209 6.209 11 C -0.442 4.442 12 H 0.080 0.920 13 C -0.174 4.174 14 N -0.531 5.531 15 Si 0.752 3.248 16 H -0.207 1.207 17 H -0.209 1.209 18 H -0.200 1.200 19 C -0.011 4.011 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.311 2.371 1.341 13.587 hybrid contribution 0.748 -0.954 -0.143 1.221 sum -12.563 1.417 1.198 12.699 Atomic orbital electron populations 1.21652 0.92696 1.02368 1.02394 1.21209 0.97795 0.97600 0.96496 1.21714 1.01736 0.93644 1.02682 1.20390 0.78642 0.78274 0.89902 1.90660 1.55357 1.62048 1.34998 1.50250 1.18020 1.55322 1.14446 1.23167 0.86307 0.97649 0.93894 1.23046 0.93414 1.01694 0.94773 1.22008 0.89140 0.93398 0.95160 1.85628 1.27997 1.38423 1.68884 1.20792 0.98073 0.93455 1.31852 0.91953 1.24946 0.97812 0.96861 0.97792 1.70016 1.29840 1.17741 1.35535 0.85974 0.80682 0.79662 0.78494 1.20697 1.20879 1.20034 1.23432 0.83186 1.01814 0.92707 0.91543 0.91931 0.92568 0.89265 0.91811 0.91401 0.92089 0.89823 0.90149 0.87493 0.95235 0.95459 0.93183 0.89632 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.76 37.16 0.33 -1.09 16 2 C -0.11 -1.29 3.09 -91.77 -0.28 -1.58 16 3 C -0.14 -1.48 9.18 37.16 0.34 -1.14 16 4 C 0.54 8.29 7.14 -10.98 -0.08 8.21 16 5 O -0.55 -10.30 16.87 5.55 0.09 -10.21 16 6 N -0.65 -9.64 3.62 -178.07 -0.64 -10.28 16 7 C 0.11 1.62 8.41 -2.97 -0.02 1.59 16 8 C -0.11 -1.81 4.19 -89.69 -0.38 -2.18 16 9 C 0.08 1.63 5.86 37.16 0.22 1.85 16 10 O -0.29 -7.98 9.78 -16.48 -0.16 -8.14 16 11 C -0.36 -10.30 9.89 30.88 0.31 -9.99 16 12 H 0.06 1.66 7.77 -52.49 -0.41 1.26 16 13 C 0.02 0.70 5.49 -17.51 -0.10 0.60 16 14 N -0.89 -27.10 13.67 55.48 0.76 -26.34 16 15 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.11 1.62 7.99 -2.77 -0.02 1.59 16 20 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.09 0.95 7.86 -51.93 -0.41 0.54 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.52 7.88 -51.93 -0.41 0.11 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -33.60 293.76 -5.64 -39.24 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -5.40 Total: -3.04 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 0.31 Total: -2.14 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.11 Total: -36.62 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.07 Total: -18.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.60 -5.64 -39.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260098813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.843 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds