Wall clock time and date at job start Mon Mar 30 2020 02:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47297 * 2 1 4 4 C 1.50698 * 109.47050 * 119.99988 * 2 1 3 5 5 O 1.21285 * 120.00170 * 332.43416 * 4 2 1 6 6 N 1.34781 * 119.99924 * 152.43745 * 4 2 1 7 7 C 1.47576 * 134.49120 * 174.60774 * 6 4 2 8 8 C 1.53948 * 86.11663 * 204.63292 * 7 6 4 9 9 C 1.52995 * 113.74325 * 221.94020 * 8 7 6 10 10 O 1.42903 * 109.47172 * 183.07756 * 9 8 7 11 11 C 1.34921 * 116.99767 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00565 * 359.97438 * 11 10 9 13 13 C 1.38637 * 119.99791 * 179.97438 * 11 10 9 14 14 N 1.31587 * 119.99927 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00421 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47237 * 89.99684 * 15 13 11 17 17 H 1.48498 * 109.47398 * 210.00016 * 15 13 11 18 18 H 1.48504 * 109.46800 * 330.00360 * 15 13 11 19 19 C 1.47927 * 134.50164 * 354.59763 * 6 4 2 20 20 H 1.09004 * 109.46635 * 300.00145 * 1 2 3 21 21 H 1.09004 * 109.46759 * 59.99869 * 1 2 3 22 22 H 1.08994 * 109.46922 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46937 * 240.00219 * 2 1 3 24 24 H 1.09005 * 109.47334 * 184.77257 * 3 2 1 25 25 H 1.09000 * 109.47129 * 304.77274 * 3 2 1 26 26 H 1.08997 * 109.47058 * 64.77225 * 3 2 1 27 27 H 1.08999 * 113.77089 * 90.33419 * 7 6 4 28 28 H 1.08996 * 113.77254 * 318.93352 * 7 6 4 29 29 H 1.09005 * 113.73779 * 90.73584 * 8 7 6 30 30 H 1.08998 * 109.47061 * 303.07662 * 9 8 7 31 31 H 1.09002 * 109.47535 * 63.07539 * 9 8 7 32 32 H 0.97003 * 119.99986 * 179.97438 * 14 13 11 33 33 H 1.09001 * 113.86401 * 41.10490 * 19 6 4 34 34 H 1.08990 * 113.77202 * 269.61166 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.3566 -0.7305 2.2374 6 7 3.2326 -1.3234 1.2119 7 6 4.0613 -2.0054 2.2248 8 6 5.2612 -1.6580 1.3251 9 6 6.2747 -2.7953 1.1836 10 8 7.3798 -2.3529 0.3929 11 6 8.3692 -3.2430 0.1708 12 1 8.3031 -4.2384 0.5845 13 6 9.4707 -2.8797 -0.5886 14 7 9.5511 -1.6670 -1.0931 15 14 10.8410 -4.1116 -0.8956 16 1 10.5504 -4.8765 -2.1348 17 1 12.1298 -3.3902 -1.0499 18 1 10.9319 -5.0474 0.2538 19 6 4.2483 -1.5829 0.1683 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1268 1.4437 -0.0855 25 1 1.6086 1.9804 -0.8441 26 1 1.7483 1.9310 0.9296 27 1 3.8667 -3.0750 2.3039 28 1 4.0766 -1.5020 3.1914 29 1 5.7263 -0.7015 1.5640 30 1 6.6296 -3.0908 2.1709 31 1 5.7990 -3.6477 0.6985 32 1 10.3220 -1.4127 -1.6241 33 1 4.4128 -0.7422 -0.5058 34 1 4.1085 -2.5285 -0.3553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260098813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:18 Heat of formation + Delta-G solvation = -70.651049 kcal Electronic energy + Delta-G solvation = -15623.970807 eV Core-core repulsion = 12943.504847 eV Total energy + Delta-G solvation = -2680.465961 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.45398 -39.36168 -37.82627 -35.39215 -33.91967 -31.60887 -28.14561 -27.65303 -27.21897 -25.99783 -23.56432 -21.36260 -19.76943 -19.51920 -18.25458 -17.61318 -17.03594 -16.53986 -15.95890 -15.81456 -15.42501 -14.85922 -14.42398 -14.26804 -13.72655 -13.59818 -13.53404 -13.16857 -13.14220 -12.89851 -12.72560 -12.29776 -12.14037 -12.07152 -12.02250 -11.87991 -11.34594 -11.18352 -10.71346 -10.10523 -9.78928 -8.14401 -5.83381 1.44066 1.49455 1.52613 1.58581 1.76862 2.35797 3.18012 3.23251 3.41788 3.74251 3.87316 3.99340 4.07610 4.31007 4.39151 4.45933 4.51538 4.55778 4.62976 4.70899 4.77022 4.82607 4.84873 4.87482 4.91184 5.05991 5.23040 5.25145 5.29413 5.32108 6.24282 6.63409 7.05512 7.29452 8.08766 9.10090 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.053459 B = 0.004879 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.635657 B = 5737.140226 C = 6031.304444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C -0.137 4.137 4 C 0.531 3.469 5 O -0.590 6.590 6 N -0.646 5.646 7 C 0.117 3.883 8 C -0.110 4.110 9 C 0.078 3.922 10 O -0.333 6.333 11 C -0.377 4.377 12 H 0.074 0.926 13 C -0.039 4.039 14 N -0.937 5.937 15 Si 1.001 2.999 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.260 1.260 19 C 0.118 3.882 20 H 0.051 0.949 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.260 0.740 33 H 0.092 0.908 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 1.114 0.286 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.129 4.129 3 C -0.195 4.195 4 C 0.323 3.677 5 O -0.471 6.471 6 N -0.380 5.380 7 C -0.005 4.005 8 C -0.129 4.129 9 C 0.001 3.999 10 O -0.249 6.249 11 C -0.456 4.456 12 H 0.091 0.909 13 C -0.232 4.232 14 N -0.582 5.582 15 Si 0.824 3.176 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.184 1.184 19 C -0.004 4.004 20 H 0.071 0.929 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.123 0.877 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.621 1.481 0.664 13.717 hybrid contribution 0.772 -0.675 0.132 1.034 sum -12.849 0.806 0.797 12.899 Atomic orbital electron populations 1.21653 0.91735 1.02319 1.03079 1.21315 0.98567 0.97896 0.95091 1.21716 1.01405 0.93011 1.03322 1.21111 0.78201 0.77795 0.90589 1.90639 1.56382 1.63407 1.36681 1.50291 1.18039 1.55109 1.14591 1.23184 0.84904 0.98714 0.93690 1.22920 0.93233 0.99835 0.96933 1.22250 0.88015 0.95212 0.94449 1.85560 1.29438 1.39653 1.70257 1.21305 0.98630 0.94049 1.31572 0.90883 1.26142 1.00598 0.99032 0.97477 1.70180 1.30985 1.20229 1.36831 0.84813 0.76696 0.77104 0.78995 1.19561 1.20685 1.18449 1.23439 0.82034 1.02743 0.92209 0.92948 0.89107 0.93023 0.87672 0.92489 0.88789 0.93078 0.88171 0.89806 0.88898 0.94850 0.94140 0.93135 0.88924 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.76 71.98 0.63 -1.90 16 2 C -0.11 -2.35 3.09 -11.54 -0.04 -2.38 16 3 C -0.14 -2.66 9.18 71.98 0.66 -2.00 16 4 C 0.53 15.89 7.14 87.66 0.63 16.51 16 5 O -0.59 -21.87 16.87 -3.05 -0.05 -21.92 16 6 N -0.65 -18.55 3.62 -835.66 -3.02 -21.57 16 7 C 0.12 3.25 8.41 86.49 0.73 3.98 16 8 C -0.11 -3.55 4.19 -10.13 -0.04 -3.60 16 9 C 0.08 3.10 5.86 71.98 0.42 3.52 16 10 O -0.33 -18.21 9.78 -81.90 -0.80 -19.01 16 11 C -0.38 -21.34 9.89 67.92 0.67 -20.67 16 12 H 0.07 3.83 7.77 -2.91 -0.02 3.81 16 13 C -0.04 -2.23 5.49 84.82 0.47 -1.76 16 14 N -0.94 -57.86 13.67 21.61 0.30 -57.56 16 15 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 17 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 19 C 0.12 3.28 7.99 86.42 0.69 3.97 16 20 H 0.05 1.16 7.86 -2.39 -0.02 1.14 16 21 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.11 1.97 7.86 -2.39 -0.02 1.95 16 24 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 2.46 8.10 -2.39 -0.02 2.44 16 28 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.49 7.88 -2.39 -0.02 1.47 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 34 H 0.10 2.60 7.92 -2.39 -0.02 2.58 16 Total: -1.00 -72.21 293.76 4.32 -67.89 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.06 Total: 10.86 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.81 Total: -4.33 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -2.73 Total: -79.13 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -0.85 Total: -40.93 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.21 4.32 -67.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260098813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.765 kcal (2) G-P(sol) polarization free energy of solvation -72.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds