Wall clock time and date at job start Mon Mar 30 2020 02:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 C 1.50704 * 109.47045 * 120.00272 * 2 1 3 5 5 O 1.21274 * 119.99693 * 334.04976 * 4 2 1 6 6 N 1.34775 * 120.00038 * 154.05509 * 4 2 1 7 7 C 1.47427 * 125.64850 * 354.68199 * 6 4 2 8 8 C 1.54909 * 104.83197 * 155.90972 * 7 6 4 9 9 C 1.55158 * 101.58050 * 37.01173 * 8 7 6 10 10 H 1.08998 * 110.71913 * 83.03632 * 9 8 7 11 11 O 1.42895 * 110.72161 * 206.13757 * 9 8 7 12 12 C 1.34929 * 116.99744 * 268.54592 * 11 9 8 13 13 H 1.07999 * 119.99980 * 0.02562 * 12 11 9 14 14 C 1.38638 * 120.00243 * 179.97438 * 12 11 9 15 15 N 1.31588 * 119.99827 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00012 * 179.72254 * 14 12 11 17 17 H 1.48501 * 109.46895 * 180.27540 * 16 14 12 18 18 H 1.48491 * 109.47421 * 300.27705 * 16 14 12 19 19 H 1.48500 * 109.46911 * 60.28163 * 16 14 12 20 20 C 1.47019 * 125.64998 * 174.73089 * 6 4 2 21 21 H 1.09003 * 109.46871 * 300.00200 * 1 2 3 22 22 H 1.09008 * 109.46962 * 60.00019 * 1 2 3 23 23 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46871 * 239.99800 * 2 1 3 25 25 H 1.09005 * 109.46971 * 304.92328 * 3 2 1 26 26 H 1.08997 * 109.47059 * 64.92116 * 3 2 1 27 27 H 1.08993 * 109.47116 * 184.92434 * 3 2 1 28 28 H 1.08997 * 110.36553 * 37.07340 * 7 6 4 29 29 H 1.08997 * 110.36971 * 274.75026 * 7 6 4 30 30 H 1.08997 * 111.00222 * 278.93818 * 8 7 6 31 31 H 1.08995 * 111.00430 * 155.08228 * 8 7 6 32 32 H 0.97002 * 119.99586 * 359.72416 * 15 14 12 33 33 H 1.08999 * 109.88230 * 61.59879 * 20 6 4 34 34 H 1.09006 * 109.87921 * 300.43936 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.3441 -0.7557 2.2279 6 7 3.2465 -1.2955 1.2224 7 6 4.1361 -1.4125 0.0526 8 6 5.5580 -1.5614 0.6490 9 6 5.2802 -2.4318 1.9030 10 1 5.2336 -3.4878 1.6369 11 8 6.2747 -2.2080 2.9043 12 6 7.3550 -3.0162 2.8861 13 1 7.4384 -3.7893 2.1366 14 6 8.3584 -2.8536 3.8288 15 7 8.2575 -1.9107 4.7411 16 14 9.8503 -3.9775 3.8083 17 1 10.7669 -3.6036 4.9153 18 1 9.4118 -5.3854 3.9829 19 1 10.5582 -3.8368 2.5106 20 6 3.9028 -1.9234 2.3784 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6065 1.9811 -0.8426 26 1 1.7505 1.9302 0.9308 27 1 3.1264 1.4437 -0.0882 28 1 4.0746 -0.5145 -0.5621 29 1 3.8768 -2.2935 -0.5346 30 1 5.9674 -0.5911 0.9298 31 1 6.2209 -2.0773 -0.0456 32 1 7.4829 -1.3268 4.7515 33 1 3.3023 -2.7597 2.7365 34 1 4.0328 -1.1901 3.1743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260196088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:41 Heat of formation + Delta-G solvation = -83.966955 kcal Electronic energy + Delta-G solvation = -16028.129327 eV Core-core repulsion = 13347.085945 eV Total energy + Delta-G solvation = -2681.043382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.02063 -37.72374 -35.54443 -34.46026 -31.82611 -30.21980 -28.41922 -27.26905 -24.37856 -23.73376 -22.06483 -20.38604 -18.76976 -18.15159 -17.27755 -16.08399 -15.20740 -14.88460 -14.60904 -14.16576 -13.70503 -13.60193 -13.12818 -13.01942 -12.75348 -12.44298 -12.24924 -11.94306 -11.87973 -11.48273 -11.26746 -11.12094 -10.83573 -10.66829 -10.14204 -10.03197 -9.65515 -9.59782 -9.25059 -8.45175 -8.03173 -6.34075 -3.67278 2.75030 3.09705 3.37980 3.42274 3.60257 4.38801 4.46447 4.72642 4.88124 4.92406 5.04682 5.19165 5.28483 5.41005 5.44817 5.46644 5.58701 5.63591 5.68242 5.74020 5.82043 6.04018 6.10089 6.12482 6.21530 6.28988 6.45521 6.54089 6.66979 7.62918 7.69367 8.30456 8.78155 9.37823 9.99184 11.13289 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061227 B = 0.005456 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.205843 B = 5130.859449 C = 5243.811461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.529 3.471 5 O -0.545 6.545 6 N -0.613 5.613 7 C 0.099 3.901 8 C -0.155 4.155 9 C 0.100 3.900 10 H 0.058 0.942 11 O -0.301 6.301 12 C -0.453 4.453 13 H 0.055 0.945 14 C -0.005 4.005 15 N -0.911 5.911 16 Si 1.091 2.909 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.289 1.289 20 C 0.109 3.891 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.276 0.724 33 H 0.068 0.932 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.012 2.692 -12.989 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.318 3.682 5 O -0.422 6.422 6 N -0.348 5.348 7 C -0.024 4.024 8 C -0.194 4.194 9 C 0.039 3.961 10 H 0.075 0.925 11 O -0.216 6.216 12 C -0.531 4.531 13 H 0.073 0.927 14 C -0.206 4.206 15 N -0.549 5.549 16 Si 0.918 3.082 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.215 1.215 20 C -0.014 4.014 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.032 2.510 -11.531 14.861 hybrid contribution -1.392 0.059 -1.158 1.812 sum -10.424 2.569 -12.689 16.621 Atomic orbital electron populations 1.21649 0.92618 1.02473 1.02398 1.21250 0.98022 0.97488 0.96420 1.21728 1.01477 0.93773 1.02884 1.20347 0.79636 0.78288 0.89953 1.90679 1.55695 1.60353 1.35463 1.48484 1.17128 1.56995 1.12188 1.22374 0.90346 1.01201 0.88466 1.23359 0.94308 1.02626 0.99061 1.22568 0.88047 0.96721 0.88747 0.92453 1.85380 1.29633 1.57527 1.49088 1.21707 0.98727 1.14652 1.18056 0.92717 1.26083 1.00821 1.00762 0.92911 1.70573 1.32217 1.18402 1.33695 0.83166 0.74541 0.74253 0.76262 1.20288 1.21508 1.21527 1.21910 0.92920 0.97951 0.88612 0.91434 0.92018 0.92464 0.89328 0.91397 0.91876 0.92020 0.90789 0.91484 0.90105 0.90179 0.91440 0.91408 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.74 37.16 0.32 -1.08 16 2 C -0.11 -1.27 2.57 -91.77 -0.24 -1.51 16 3 C -0.14 -1.44 9.15 37.16 0.34 -1.10 16 4 C 0.53 8.61 6.94 -10.98 -0.08 8.54 16 5 O -0.54 -10.90 16.44 5.56 0.09 -10.81 16 6 N -0.61 -10.13 3.33 -170.52 -0.57 -10.70 16 7 C 0.10 1.34 6.37 -2.53 -0.02 1.33 16 8 C -0.16 -2.66 6.81 -24.58 -0.17 -2.83 16 9 C 0.10 2.10 3.44 -24.90 -0.09 2.01 16 10 H 0.06 1.19 7.90 -51.93 -0.41 0.78 16 11 O -0.30 -8.30 8.91 -16.51 -0.15 -8.45 16 12 C -0.45 -13.02 9.82 30.88 0.30 -12.71 16 13 H 0.06 1.49 7.69 -52.49 -0.40 1.09 16 14 C 0.00 -0.15 5.49 -17.51 -0.10 -0.24 16 15 N -0.91 -28.75 13.70 55.48 0.76 -27.99 16 16 Si 1.09 25.07 29.92 -169.99 -5.09 19.99 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 20 C 0.11 2.13 6.65 -3.07 -0.02 2.11 16 21 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 22 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.09 0.85 7.19 -51.93 -0.37 0.47 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.63 7.50 -51.93 -0.39 0.24 16 28 H 0.07 0.81 6.75 -51.93 -0.35 0.46 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.28 8.94 7.97 -40.82 -0.33 8.62 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.67 8.06 -51.93 -0.42 1.25 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -34.03 285.65 -5.63 -39.66 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.26 Total: -0.52 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 0.27 Total: -5.48 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.19 Total: -38.69 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.06 Total: -19.25 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.99 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.03 -5.63 -39.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.310 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds