Wall clock time and date at job start Mon Mar 30 2020 02:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 C 1.50704 * 109.47045 * 120.00272 * 2 1 3 5 5 O 1.21274 * 119.99693 * 334.04976 * 4 2 1 6 6 N 1.34775 * 120.00038 * 154.05509 * 4 2 1 7 7 C 1.47427 * 125.64850 * 354.68199 * 6 4 2 8 8 C 1.54909 * 104.83197 * 155.90972 * 7 6 4 9 9 C 1.55158 * 101.58050 * 37.01173 * 8 7 6 10 10 H 1.08998 * 110.71913 * 83.03632 * 9 8 7 11 11 O 1.42895 * 110.72161 * 206.13757 * 9 8 7 12 12 C 1.34929 * 116.99744 * 268.54592 * 11 9 8 13 13 H 1.07999 * 119.99980 * 0.02562 * 12 11 9 14 14 C 1.38638 * 120.00243 * 179.97438 * 12 11 9 15 15 N 1.31588 * 119.99827 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00012 * 179.72254 * 14 12 11 17 17 H 1.48501 * 109.46895 * 180.27540 * 16 14 12 18 18 H 1.48491 * 109.47421 * 300.27705 * 16 14 12 19 19 H 1.48500 * 109.46911 * 60.28163 * 16 14 12 20 20 C 1.47019 * 125.64998 * 174.73089 * 6 4 2 21 21 H 1.09003 * 109.46871 * 300.00200 * 1 2 3 22 22 H 1.09008 * 109.46962 * 60.00019 * 1 2 3 23 23 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46871 * 239.99800 * 2 1 3 25 25 H 1.09005 * 109.46971 * 304.92328 * 3 2 1 26 26 H 1.08997 * 109.47059 * 64.92116 * 3 2 1 27 27 H 1.08993 * 109.47116 * 184.92434 * 3 2 1 28 28 H 1.08997 * 110.36553 * 37.07340 * 7 6 4 29 29 H 1.08997 * 110.36971 * 274.75026 * 7 6 4 30 30 H 1.08997 * 111.00222 * 278.93818 * 8 7 6 31 31 H 1.08995 * 111.00430 * 155.08228 * 8 7 6 32 32 H 0.97002 * 119.99586 * 359.72416 * 15 14 12 33 33 H 1.08999 * 109.88230 * 61.59879 * 20 6 4 34 34 H 1.09006 * 109.87921 * 300.43936 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.3441 -0.7557 2.2279 6 7 3.2465 -1.2955 1.2224 7 6 4.1361 -1.4125 0.0526 8 6 5.5580 -1.5614 0.6490 9 6 5.2802 -2.4318 1.9030 10 1 5.2336 -3.4878 1.6369 11 8 6.2747 -2.2080 2.9043 12 6 7.3550 -3.0162 2.8861 13 1 7.4384 -3.7893 2.1366 14 6 8.3584 -2.8536 3.8288 15 7 8.2575 -1.9107 4.7411 16 14 9.8503 -3.9775 3.8083 17 1 10.7669 -3.6036 4.9153 18 1 9.4118 -5.3854 3.9829 19 1 10.5582 -3.8368 2.5106 20 6 3.9028 -1.9234 2.3784 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.6065 1.9811 -0.8426 26 1 1.7505 1.9302 0.9308 27 1 3.1264 1.4437 -0.0882 28 1 4.0746 -0.5145 -0.5621 29 1 3.8768 -2.2935 -0.5346 30 1 5.9674 -0.5911 0.9298 31 1 6.2209 -2.0773 -0.0456 32 1 7.4829 -1.3268 4.7515 33 1 3.3023 -2.7597 2.7365 34 1 4.0328 -1.1901 3.1743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260196088.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:41 Heat of formation + Delta-G solvation = -107.875693 kcal Electronic energy + Delta-G solvation = -16029.166088 eV Core-core repulsion = 13347.085945 eV Total energy + Delta-G solvation = -2682.080142 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.35536 -39.34330 -37.33656 -35.47743 -33.91245 -31.74102 -29.90673 -28.08087 -26.32662 -25.27382 -23.22596 -21.98601 -20.28384 -19.92148 -18.50001 -17.68097 -16.66517 -16.37509 -16.22896 -15.57770 -15.40772 -15.03790 -14.74338 -14.22997 -13.96634 -13.70040 -13.54660 -13.14225 -12.94981 -12.86997 -12.56559 -12.36705 -12.11761 -12.00224 -11.92348 -11.89810 -11.40340 -11.30317 -10.88566 -10.20291 -9.82333 -8.66601 -5.97398 1.48524 1.53682 1.65867 1.79252 1.83552 2.52816 3.16356 3.29704 3.46626 3.59316 3.79401 3.93449 4.04554 4.06189 4.21167 4.38216 4.43351 4.58682 4.64148 4.70655 4.71964 4.84128 4.87791 4.92646 5.00425 5.09716 5.16113 5.25147 5.32296 5.38976 6.41570 6.42786 7.01441 7.16629 7.87180 8.81603 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.061227 B = 0.005456 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.205843 B = 5130.859449 C = 5243.811461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.520 3.480 5 O -0.592 6.592 6 N -0.615 5.615 7 C 0.107 3.893 8 C -0.147 4.147 9 C 0.086 3.914 10 H 0.063 0.937 11 O -0.344 6.344 12 C -0.453 4.453 13 H 0.068 0.932 14 C -0.067 4.067 15 N -0.944 5.944 16 Si 1.143 2.857 17 H -0.283 1.283 18 H -0.267 1.267 19 H -0.261 1.261 20 C 0.116 3.884 21 H 0.045 0.955 22 H 0.096 0.904 23 H 0.051 0.949 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.252 0.748 33 H 0.063 0.937 34 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 2.190 -16.361 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.123 4.123 3 C -0.197 4.197 4 C 0.312 3.688 5 O -0.473 6.473 6 N -0.349 5.349 7 C -0.014 4.014 8 C -0.185 4.185 9 C 0.027 3.973 10 H 0.081 0.919 11 O -0.260 6.260 12 C -0.532 4.532 13 H 0.086 0.914 14 C -0.259 4.259 15 N -0.584 5.584 16 Si 0.961 3.039 17 H -0.209 1.209 18 H -0.192 1.192 19 H -0.186 1.186 20 C -0.008 4.008 21 H 0.064 0.936 22 H 0.115 0.885 23 H 0.070 0.930 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.099 2.010 -14.967 17.631 hybrid contribution -1.501 0.227 -0.139 1.524 sum -10.600 2.237 -15.106 18.589 Atomic orbital electron populations 1.21677 0.91911 1.02371 1.03061 1.21376 0.98522 0.97770 0.94586 1.21765 1.01725 0.92899 1.03305 1.21471 0.78834 0.77450 0.91093 1.90656 1.57015 1.61896 1.37724 1.48625 1.17651 1.56682 1.11928 1.22577 0.86843 1.04565 0.87418 1.23240 0.97260 1.00683 0.97309 1.22880 0.87115 0.98006 0.89305 0.91914 1.85328 1.30569 1.58050 1.52032 1.22142 0.98884 1.14385 1.17743 0.91434 1.28008 1.04228 1.01396 0.92248 1.70737 1.31664 1.20143 1.35884 0.82576 0.70922 0.73140 0.77292 1.20853 1.19190 1.18622 1.21597 0.92803 0.97023 0.89399 0.93575 0.88505 0.93024 0.85974 0.88006 0.93934 0.91921 0.86979 0.88318 0.92056 0.88459 0.93954 0.91911 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.74 71.98 0.63 -1.82 16 2 C -0.10 -2.01 2.57 -11.54 -0.03 -2.04 16 3 C -0.14 -2.41 9.15 71.98 0.66 -1.75 16 4 C 0.52 16.45 6.94 87.66 0.61 17.06 16 5 O -0.59 -24.28 16.44 -3.01 -0.05 -24.33 16 6 N -0.61 -19.63 3.33 -811.80 -2.70 -22.33 16 7 C 0.11 2.53 6.37 86.85 0.55 3.08 16 8 C -0.15 -4.79 6.81 31.99 0.22 -4.58 16 9 C 0.09 3.66 3.44 31.78 0.11 3.77 16 10 H 0.06 2.57 7.90 -2.39 -0.02 2.55 16 11 O -0.34 -19.56 8.91 -81.98 -0.73 -20.29 16 12 C -0.45 -26.29 9.82 67.92 0.67 -25.63 16 13 H 0.07 3.63 7.69 -2.91 -0.02 3.60 16 14 C -0.07 -3.94 5.49 84.82 0.47 -3.48 16 15 N -0.94 -61.55 13.70 21.61 0.30 -61.26 16 16 Si 1.14 49.77 29.92 68.60 2.05 51.82 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 20 C 0.12 4.69 6.65 86.73 0.58 5.26 16 21 H 0.05 1.04 7.87 -2.39 -0.02 1.03 16 22 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.12 1.66 7.19 -2.39 -0.02 1.64 16 25 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 1.07 7.50 -2.39 -0.02 1.06 16 28 H 0.11 1.88 6.75 -2.39 -0.02 1.86 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.25 17.25 7.97 -92.71 -0.74 16.51 16 33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.04 1.97 8.06 -2.38 -0.02 1.95 16 Total: -1.00 -78.44 285.65 4.42 -74.02 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.10 Total: 12.49 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 4.46 Total: -10.12 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.40 Total: -83.59 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.78 Total: -44.62 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Total: -78.44 4.42 -74.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260196088.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.857 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds