Wall clock time and date at job start Mon Mar 30 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46667 * 2 1 4 4 N 1.46503 * 109.47229 * 119.99439 * 2 1 3 5 5 C 1.33747 * 118.64346 * 299.56698 * 4 2 1 6 6 O 1.21287 * 118.86542 * 358.14866 * 5 4 2 7 7 C 1.50345 * 122.29829 * 178.06416 * 5 4 2 8 8 O 1.42971 * 109.80823 * 15.98298 * 7 5 4 9 9 C 1.43246 * 112.98551 * 310.39813 * 8 7 5 10 10 C 1.46098 * 118.72495 * 119.67731 * 4 2 1 11 11 H 1.08991 * 109.39368 * 78.29028 * 10 4 2 12 12 C 1.53002 * 109.39388 * 318.47939 * 10 4 2 13 13 C 1.50703 * 109.46721 * 176.72588 * 12 10 4 14 14 H 1.07990 * 120.00183 * 354.97049 * 13 12 10 15 15 C 1.37884 * 119.99532 * 174.97338 * 13 12 10 16 16 N 1.31512 * 120.00113 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99525 * 179.72241 * 15 13 12 18 18 H 1.48499 * 109.46818 * 270.27393 * 17 15 13 19 19 H 1.48501 * 109.47256 * 30.27370 * 17 15 13 20 20 H 1.48502 * 109.47106 * 150.27522 * 17 15 13 21 21 H 1.08998 * 109.47371 * 60.00060 * 1 2 3 22 22 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47043 * 299.99555 * 1 2 3 24 24 H 1.08995 * 109.47258 * 240.00182 * 2 1 3 25 25 H 1.09000 * 109.46640 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47176 * 300.00059 * 3 2 1 27 27 H 1.09003 * 109.47025 * 60.00434 * 3 2 1 28 28 H 1.09000 * 109.41540 * 255.87853 * 7 5 4 29 29 H 1.09000 * 109.41045 * 136.08213 * 7 5 4 30 30 H 1.08996 * 109.60557 * 308.61073 * 9 8 7 31 31 H 1.09001 * 109.73849 * 188.19766 * 9 8 7 32 32 H 1.08998 * 109.47668 * 56.71918 * 12 10 4 33 33 H 1.09000 * 109.46922 * 296.71943 * 12 10 4 34 34 H 0.97000 * 120.00205 * 359.72911 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6860 -0.2050 2.3974 6 8 1.0213 0.8078 2.4560 7 6 2.1060 -0.8719 3.6777 8 8 3.1598 -1.8021 3.4164 9 6 2.8673 -2.6879 2.3293 10 6 2.8505 -1.8798 1.0300 11 1 3.8670 -1.5779 0.7782 12 6 2.2827 -2.7434 -0.0982 13 6 3.1843 -3.9295 -0.3251 14 1 4.1141 -4.0127 0.2178 15 6 2.8220 -4.9084 -1.2260 16 7 1.6895 -4.8073 -1.8869 17 14 3.9433 -6.3747 -1.5130 18 1 4.8975 -6.0614 -2.6069 19 1 4.6971 -6.6724 -0.2687 20 1 3.1266 -7.5557 -1.8916 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9564 0.8901 28 1 1.2548 -1.4000 4.1073 29 1 2.4556 -0.1167 4.3817 30 1 1.8923 -3.1493 2.4857 31 1 3.6327 -3.4616 2.2688 32 1 2.2219 -2.1530 -1.0124 33 1 1.2870 -3.0913 0.1766 34 1 1.1072 -4.0460 -1.7376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260715002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:55 Heat of formation + Delta-G solvation = -87.143875 kcal Electronic energy + Delta-G solvation = -16831.537365 eV Core-core repulsion = 14150.356222 eV Total energy + Delta-G solvation = -2681.181143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.58262 -37.50331 -36.18750 -33.82227 -32.14462 -30.17854 -27.69784 -26.85917 -25.69564 -24.07870 -21.52852 -21.23030 -18.51681 -17.39649 -16.72734 -16.37118 -15.32866 -14.95294 -14.49160 -14.47232 -13.85339 -13.65961 -13.27020 -12.93001 -12.58427 -12.30051 -11.99512 -11.75656 -11.57024 -11.29070 -11.00515 -10.91660 -10.73515 -10.45266 -10.26001 -10.14728 -9.96488 -8.83769 -8.79374 -8.46529 -8.24901 -6.52894 -4.25346 2.80858 3.22836 3.36558 3.38279 3.53998 4.08331 4.41796 4.64839 5.20703 5.25359 5.30381 5.33635 5.43865 5.46487 5.58328 5.64983 5.90381 5.92706 6.04985 6.13758 6.21292 6.26120 6.33538 6.45665 6.59480 6.86420 7.05428 7.18026 7.18434 7.82749 7.95798 8.25701 8.41014 8.68303 9.47427 10.87413 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.008720 C = 0.007386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.942493 B = 3210.223334 C = 3789.965832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 C -0.166 4.166 4 N -0.587 5.587 5 C 0.484 3.516 6 O -0.556 6.556 7 C 0.049 3.951 8 O -0.381 6.381 9 C 0.061 3.939 10 C 0.116 3.884 11 H 0.074 0.926 12 C 0.005 3.995 13 C -0.607 4.607 14 H 0.055 0.945 15 C 0.020 3.980 16 N -0.906 5.906 17 Si 1.071 2.929 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.284 1.284 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 6.345 6.231 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.029 3.971 3 C -0.224 4.224 4 N -0.318 5.318 5 C 0.272 3.728 6 O -0.437 6.437 7 C -0.031 4.031 8 O -0.300 6.300 9 C -0.016 4.016 10 C 0.014 3.986 11 H 0.092 0.908 12 C -0.033 4.033 13 C -0.646 4.646 14 H 0.073 0.927 15 C -0.185 4.185 16 N -0.541 5.541 17 Si 0.899 3.101 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.209 1.209 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.816 5.429 5.501 7.772 hybrid contribution -0.353 1.322 0.580 1.486 sum 0.463 6.751 6.080 9.098 Atomic orbital electron populations 1.22149 0.95098 1.02190 1.02817 1.21139 0.94626 0.92972 0.88347 1.22203 1.00643 0.96421 1.03166 1.47934 1.50134 1.28261 1.05507 1.20907 0.80425 0.85182 0.86313 1.90594 1.40551 1.25088 1.87481 1.22744 0.92564 0.93140 0.94666 1.88135 1.40877 1.47788 1.53151 1.23086 1.03157 0.91721 0.83609 1.21935 0.94289 0.84245 0.98139 0.90796 1.19602 0.97008 0.94617 0.92025 1.21911 1.07339 1.07200 1.28139 0.92682 1.25852 0.98301 1.01323 0.92979 1.70768 1.10691 1.32294 1.40367 0.83504 0.74969 0.75518 0.76122 1.21357 1.21259 1.20946 0.92203 0.92672 0.90761 0.88570 0.93177 0.92281 0.90246 0.89987 0.86103 0.92290 0.86031 0.96277 0.96454 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.10 37.16 0.34 -2.41 16 2 C 0.13 2.31 2.74 -67.93 -0.19 2.12 16 3 C -0.17 -2.62 9.09 37.16 0.34 -2.29 16 4 N -0.59 -10.79 2.69 -159.31 -0.43 -11.22 16 5 C 0.48 8.62 7.00 -11.62 -0.08 8.54 16 6 O -0.56 -10.69 12.76 5.55 0.07 -10.62 16 7 C 0.05 0.73 6.98 35.83 0.25 0.98 16 8 O -0.38 -6.38 10.85 -35.23 -0.38 -6.77 16 9 C 0.06 1.09 5.78 37.17 0.21 1.30 16 10 C 0.12 2.28 3.02 -68.14 -0.21 2.07 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 12 C 0.00 0.11 3.52 -27.88 -0.10 0.01 16 13 C -0.61 -15.55 8.43 -34.44 -0.29 -15.84 16 14 H 0.05 1.37 7.14 -52.49 -0.37 0.99 16 15 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 16 N -0.91 -26.12 13.65 55.43 0.76 -25.36 16 17 Si 1.07 23.76 29.90 -169.99 -5.08 18.67 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.29 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.07 1.31 6.10 -51.93 -0.32 0.99 16 24 H 0.10 1.77 5.71 -51.93 -0.30 1.48 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.36 5.90 -51.93 -0.31 1.05 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.12 2.18 7.29 -51.93 -0.38 1.80 16 32 H 0.02 0.47 5.99 -51.93 -0.31 0.15 16 33 H 0.02 0.43 7.80 -51.93 -0.41 0.02 16 34 H 0.27 7.74 7.19 -40.82 -0.29 7.45 16 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -28.79 270.46 -5.66 -34.45 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.86 Total: 1.83 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 0.18 Total: -5.06 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.33 Total: -36.58 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.31 Total: -17.38 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.08 Total: 18.67 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.79 -5.66 -34.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.692 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds