Wall clock time and date at job start Mon Mar 30 2020 03:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46667 * 2 1 4 4 N 1.46503 * 109.47229 * 119.99439 * 2 1 3 5 5 C 1.33747 * 118.64346 * 299.56698 * 4 2 1 6 6 O 1.21287 * 118.86542 * 358.14866 * 5 4 2 7 7 C 1.50345 * 122.29829 * 178.06416 * 5 4 2 8 8 O 1.42971 * 109.80823 * 15.98298 * 7 5 4 9 9 C 1.43246 * 112.98551 * 310.39813 * 8 7 5 10 10 C 1.46098 * 118.72495 * 119.67731 * 4 2 1 11 11 H 1.08991 * 109.39368 * 78.29028 * 10 4 2 12 12 C 1.53002 * 109.39388 * 318.47939 * 10 4 2 13 13 C 1.50703 * 109.46721 * 176.72588 * 12 10 4 14 14 H 1.07990 * 120.00183 * 354.97049 * 13 12 10 15 15 C 1.37884 * 119.99532 * 174.97338 * 13 12 10 16 16 N 1.31512 * 120.00113 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99525 * 179.72241 * 15 13 12 18 18 H 1.48499 * 109.46818 * 270.27393 * 17 15 13 19 19 H 1.48501 * 109.47256 * 30.27370 * 17 15 13 20 20 H 1.48502 * 109.47106 * 150.27522 * 17 15 13 21 21 H 1.08998 * 109.47371 * 60.00060 * 1 2 3 22 22 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47043 * 299.99555 * 1 2 3 24 24 H 1.08995 * 109.47258 * 240.00182 * 2 1 3 25 25 H 1.09000 * 109.46640 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47176 * 300.00059 * 3 2 1 27 27 H 1.09003 * 109.47025 * 60.00434 * 3 2 1 28 28 H 1.09000 * 109.41540 * 255.87853 * 7 5 4 29 29 H 1.09000 * 109.41045 * 136.08213 * 7 5 4 30 30 H 1.08996 * 109.60557 * 308.61073 * 9 8 7 31 31 H 1.09001 * 109.73849 * 188.19766 * 9 8 7 32 32 H 1.08998 * 109.47668 * 56.71918 * 12 10 4 33 33 H 1.09000 * 109.46922 * 296.71943 * 12 10 4 34 34 H 0.97000 * 120.00205 * 359.72911 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.6860 -0.2050 2.3974 6 8 1.0213 0.8078 2.4560 7 6 2.1060 -0.8719 3.6777 8 8 3.1598 -1.8021 3.4164 9 6 2.8673 -2.6879 2.3293 10 6 2.8505 -1.8798 1.0300 11 1 3.8670 -1.5779 0.7782 12 6 2.2827 -2.7434 -0.0982 13 6 3.1843 -3.9295 -0.3251 14 1 4.1141 -4.0127 0.2178 15 6 2.8220 -4.9084 -1.2260 16 7 1.6895 -4.8073 -1.8869 17 14 3.9433 -6.3747 -1.5130 18 1 4.8975 -6.0614 -2.6069 19 1 4.6971 -6.6724 -0.2687 20 1 3.1266 -7.5557 -1.8916 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9564 0.8901 28 1 1.2548 -1.4000 4.1073 29 1 2.4556 -0.1167 4.3817 30 1 1.8923 -3.1493 2.4857 31 1 3.6327 -3.4616 2.2688 32 1 2.2219 -2.1530 -1.0124 33 1 1.2870 -3.0913 0.1766 34 1 1.1072 -4.0460 -1.7376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260715002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:54 Heat of formation + Delta-G solvation = -105.439899 kcal Electronic energy + Delta-G solvation = -16832.330741 eV Core-core repulsion = 14150.356222 eV Total energy + Delta-G solvation = -2681.974518 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01228 -38.91040 -37.67526 -35.64479 -33.74907 -31.74955 -29.18925 -28.19075 -27.22822 -25.90485 -23.20238 -22.69188 -19.93378 -19.12437 -18.43645 -17.75288 -16.72858 -16.43540 -15.90578 -15.84838 -15.61258 -15.18855 -14.88239 -14.35721 -14.22873 -13.81969 -13.61632 -13.22646 -13.00841 -12.84881 -12.60689 -12.33602 -12.25825 -12.09980 -11.90807 -11.77398 -11.33844 -10.77331 -10.56281 -10.19751 -9.75865 -8.66160 -6.38508 1.41914 1.57981 1.65035 1.81951 1.82588 2.58538 2.74935 3.17811 3.28135 3.79219 3.90853 3.95750 4.09257 4.17167 4.23001 4.33732 4.40913 4.58226 4.65724 4.67767 4.78185 4.85174 4.87153 5.07927 5.13213 5.23872 5.27448 5.50634 5.78612 5.92684 6.18275 6.42245 6.55839 6.98898 7.42726 8.74593 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.031740 B = 0.008720 C = 0.007386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.942493 B = 3210.223334 C = 3789.965832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 C -0.155 4.155 4 N -0.593 5.593 5 C 0.478 3.522 6 O -0.571 6.571 7 C 0.048 3.952 8 O -0.379 6.379 9 C 0.068 3.932 10 C 0.126 3.874 11 H 0.071 0.929 12 C 0.015 3.985 13 C -0.609 4.609 14 H 0.064 0.936 15 C -0.032 4.032 16 N -0.937 5.937 17 Si 1.116 2.884 18 H -0.277 1.277 19 H -0.262 1.262 20 H -0.289 1.289 21 H 0.080 0.920 22 H 0.036 0.964 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.004 0.996 33 H -0.005 1.005 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 6.522 7.271 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 C -0.213 4.213 4 N -0.325 5.325 5 C 0.267 3.733 6 O -0.452 6.452 7 C -0.030 4.030 8 O -0.298 6.298 9 C -0.008 4.008 10 C 0.023 3.977 11 H 0.089 0.911 12 C -0.023 4.023 13 C -0.647 4.647 14 H 0.083 0.917 15 C -0.231 4.231 16 N -0.574 5.574 17 Si 0.937 3.063 18 H -0.203 1.203 19 H -0.187 1.187 20 H -0.215 1.215 21 H 0.099 0.901 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.167 0.833 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.022 0.978 33 H 0.013 0.987 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.815 5.633 6.566 8.839 hybrid contribution -0.698 1.349 0.269 1.542 sum 1.118 6.982 6.835 9.834 Atomic orbital electron populations 1.22064 0.94612 1.01181 1.03485 1.21249 0.95063 0.93894 0.87701 1.22102 1.00565 0.94994 1.03660 1.47981 1.50221 1.27975 1.06279 1.21458 0.79964 0.85062 0.86795 1.90592 1.41190 1.25767 1.87701 1.22988 0.93101 0.93457 0.93499 1.88140 1.41611 1.47775 1.52226 1.22911 1.03106 0.91625 0.83192 1.21688 0.93832 0.84367 0.97808 0.91097 1.19414 0.95631 0.94426 0.92792 1.22294 1.07667 1.07478 1.27277 0.91748 1.27263 0.98726 1.04200 0.92862 1.70897 1.11979 1.32343 1.42225 0.82941 0.73638 0.72343 0.77331 1.20284 1.18672 1.21511 0.90091 0.94436 0.91463 0.90012 0.93138 0.90127 0.91330 0.87841 0.83251 0.92512 0.85912 0.97821 0.98702 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.10 71.98 0.66 -4.52 16 2 C 0.12 4.29 2.74 44.99 0.12 4.42 16 3 C -0.16 -4.71 9.09 71.98 0.65 -4.05 16 4 N -0.59 -21.44 2.69 -776.90 -2.09 -23.52 16 5 C 0.48 16.29 7.00 87.71 0.61 16.91 16 6 O -0.57 -21.11 12.76 -3.05 -0.04 -21.14 16 7 C 0.05 1.32 6.98 71.12 0.50 1.81 16 8 O -0.38 -11.76 10.85 -148.98 -1.62 -13.37 16 9 C 0.07 2.36 5.78 71.99 0.42 2.77 16 10 C 0.13 4.87 3.02 45.08 0.14 5.00 16 11 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 12 C 0.01 0.70 3.52 29.85 0.10 0.80 16 13 C -0.61 -31.02 8.43 25.60 0.22 -30.81 16 14 H 0.06 3.11 7.14 -2.92 -0.02 3.09 16 15 C -0.03 -1.73 5.46 84.66 0.46 -1.27 16 16 N -0.94 -54.99 13.65 21.45 0.29 -54.70 16 17 Si 1.12 46.98 29.90 68.60 2.05 49.03 16 18 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 2.33 6.10 -2.39 -0.01 2.32 16 24 H 0.08 3.07 5.71 -2.39 -0.01 3.05 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.25 5.90 -2.39 -0.01 2.24 16 28 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 31 H 0.12 4.19 7.29 -2.39 -0.02 4.18 16 32 H 0.00 0.19 5.99 -2.39 -0.01 0.17 16 33 H -0.01 -0.27 7.80 -2.39 -0.02 -0.29 16 34 H 0.26 15.23 7.19 -92.71 -0.67 14.56 16 Total: -1.00 -60.83 270.46 3.67 -57.17 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.19 Total: 15.47 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 3.88 Total: -8.93 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.79 Total: -78.22 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.66 Total: -34.52 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.05 Total: 49.03 kcal Total: -60.83 3.67 -57.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.273 kcal (2) G-P(sol) polarization free energy of solvation -60.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds