Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.45806 * 2 1 4 4 C 1.53042 * 109.46535 * 240.02198 * 2 1 3 5 5 C 1.53117 * 109.27877 * 299.16364 * 4 2 1 6 6 C 1.53124 * 109.16202 * 302.34735 * 5 4 2 7 7 H 1.09001 * 109.53183 * 297.69007 * 6 5 4 8 8 C 1.50700 * 109.50300 * 177.59415 * 6 5 4 9 9 O 1.20826 * 119.99880 * 240.19808 * 8 6 5 10 10 O 1.34227 * 119.99716 * 60.19216 * 8 6 5 11 11 C 1.53035 * 109.27858 * 57.65204 * 6 5 4 12 12 N 1.46849 * 109.46459 * 119.96993 * 2 1 3 13 13 C 1.46904 * 110.99541 * 294.17989 * 12 2 1 14 14 C 1.50703 * 109.46874 * 190.25262 * 13 12 2 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 H 1.08999 * 109.47398 * 300.03141 * 1 2 3 23 23 H 1.09005 * 109.47078 * 60.03145 * 1 2 3 24 24 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.49978 * 179.22413 * 4 2 1 26 26 H 1.08996 * 109.53364 * 59.12546 * 4 2 1 27 27 H 1.08991 * 109.52499 * 182.43552 * 5 4 2 28 28 H 1.09002 * 109.57368 * 62.28094 * 5 4 2 29 29 H 0.96703 * 116.99911 * 179.97438 * 10 8 6 30 30 H 1.09000 * 109.46133 * 180.80840 * 11 6 5 31 31 H 1.09000 * 109.46504 * 60.83766 * 11 6 5 32 32 H 1.09003 * 109.47066 * 70.25538 * 13 12 2 33 33 H 1.08996 * 109.47319 * 310.25011 * 13 12 2 34 34 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 1.5443 -2.1697 -1.2355 6 6 2.0269 -2.8532 0.0470 7 1 3.1166 -2.8757 0.0601 8 6 1.4939 -4.2619 0.0974 9 8 0.7795 -4.6053 1.0094 10 8 1.8128 -5.1351 -0.8709 11 6 1.5173 -2.0704 1.2592 12 7 2.0193 -0.6917 1.1994 13 6 1.6650 0.0508 2.4165 14 6 2.3898 -0.5438 3.5965 15 1 3.0475 -1.3889 3.4563 16 6 2.2126 -0.0095 4.8551 17 7 1.4113 1.0193 5.0259 18 14 3.1116 -0.7460 6.3175 19 1 2.2774 -1.8142 6.9247 20 1 3.3692 0.3138 7.3253 21 1 4.4029 -1.3233 5.8653 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 3.1298 -0.7093 -1.2574 26 1 1.6644 -0.2167 -2.1402 27 1 1.9409 -2.6990 -2.1018 28 1 0.4549 -2.1833 -1.2676 29 1 1.4474 -6.0272 -0.7952 30 1 1.8712 -2.5464 2.1738 31 1 0.4274 -2.0607 1.2533 32 1 0.5893 -0.0132 2.5810 33 1 1.9535 1.0956 2.3017 34 1 0.9448 1.4019 4.2664 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307513306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = -103.397085 kcal Electronic energy + Delta-G solvation = -16566.986054 eV Core-core repulsion = 13885.100118 eV Total energy + Delta-G solvation = -2681.885935 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.46563 -38.67921 -36.02050 -34.00260 -32.32655 -31.43956 -27.56945 -26.17028 -24.27181 -23.53192 -21.56623 -20.82531 -18.30824 -17.86299 -16.87102 -16.32909 -15.76135 -15.27881 -14.60977 -13.78854 -13.70916 -13.56025 -13.14047 -12.89236 -12.60173 -12.12700 -12.00702 -11.74271 -11.43254 -11.12847 -10.87032 -10.78038 -10.61769 -10.55337 -10.28349 -10.09122 -10.03742 -9.82507 -8.64355 -8.34943 -7.32455 -6.34618 -4.03185 2.34200 3.11981 3.47013 3.50493 3.66216 4.53774 4.78382 4.83500 5.01005 5.07464 5.32361 5.41604 5.51500 5.65532 5.74875 5.78828 5.82371 5.89543 6.05555 6.16085 6.27153 6.35045 6.41300 6.54392 6.65200 6.69533 7.03589 7.12995 7.79644 7.92432 8.03165 8.33453 8.60258 8.89260 9.67014 11.04682 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.008677 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.884887 B = 3226.132149 C = 3957.787912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.072 3.928 3 H 0.078 0.922 4 C -0.107 4.107 5 C -0.109 4.109 6 C -0.078 4.078 7 H 0.114 0.886 8 C 0.482 3.518 9 O -0.510 6.510 10 O -0.520 6.520 11 C 0.079 3.921 12 N -0.523 5.523 13 C 0.185 3.815 14 C -0.588 4.588 15 H 0.057 0.943 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 1.073 2.927 19 H -0.288 1.288 20 H -0.285 1.285 21 H -0.288 1.288 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.404 0.596 30 H 0.092 0.908 31 H 0.035 0.965 32 H -0.015 1.015 33 H 0.022 0.978 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -7.072 -13.591 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.037 4.037 3 H 0.096 0.904 4 C -0.145 4.145 5 C -0.146 4.146 6 C -0.097 4.097 7 H 0.132 0.868 8 C 0.324 3.676 9 O -0.398 6.398 10 O -0.331 6.331 11 C -0.050 4.050 12 N -0.246 5.246 13 C 0.060 3.940 14 C -0.627 4.627 15 H 0.075 0.925 16 C -0.189 4.189 17 N -0.552 5.552 18 Si 0.902 3.098 19 H -0.215 1.215 20 H -0.210 1.210 21 H -0.214 1.214 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.262 0.738 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.003 0.997 33 H 0.040 0.960 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.044 -6.624 -11.741 13.521 hybrid contribution -1.433 -0.745 -1.543 2.234 sum -0.389 -7.369 -13.284 15.196 Atomic orbital electron populations 1.22504 0.98493 1.01854 1.01726 1.21735 0.92289 0.98302 0.91364 0.90377 1.21577 1.01520 0.94167 0.97202 1.21567 1.00985 0.96592 0.95504 1.21171 1.03176 0.86412 0.98966 0.86775 1.23722 0.77354 0.88206 0.78330 1.90734 1.35227 1.79071 1.34721 1.84559 1.71732 1.26184 1.50657 1.21769 0.97355 0.89885 0.95953 1.62109 1.58619 1.01068 1.02836 1.19808 0.94157 0.93502 0.86564 1.22006 1.29533 1.18264 0.92902 0.92474 1.25828 0.96955 0.95532 1.00610 1.70771 1.27318 1.22372 1.34695 0.83480 0.75629 0.75610 0.75118 1.21524 1.21036 1.21374 0.92250 0.92989 0.92511 0.90916 0.91613 0.91043 0.91764 0.73797 0.88974 0.94655 0.99706 0.96034 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 8.18 37.15 0.30 -2.75 16 2 C 0.07 1.24 2.92 -67.72 -0.20 1.04 16 3 H 0.08 1.36 8.01 -51.93 -0.42 0.94 16 4 C -0.11 -1.44 5.61 -26.65 -0.15 -1.59 16 5 C -0.11 -1.43 4.91 -26.61 -0.13 -1.56 16 6 C -0.08 -1.21 2.79 -91.69 -0.26 -1.47 16 7 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 8 C 0.48 7.32 7.63 36.01 0.27 7.60 16 9 O -0.51 -9.54 16.74 -18.75 -0.31 -9.86 16 10 O -0.52 -5.88 13.36 -39.25 -0.52 -6.40 16 11 C 0.08 1.58 3.57 -3.83 -0.01 1.57 16 12 N -0.52 -11.07 4.59 -228.12 -1.05 -12.11 16 13 C 0.18 4.76 3.49 -4.97 -0.02 4.74 16 14 C -0.59 -16.81 8.43 -34.44 -0.29 -17.10 16 15 H 0.06 1.64 7.14 -52.48 -0.37 1.26 16 16 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 17 N -0.91 -28.10 13.65 55.43 0.76 -27.34 16 18 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 1.09 6.78 -51.93 -0.35 0.74 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.93 4.80 -51.93 -0.25 0.68 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 29 H 0.40 2.79 9.10 45.56 0.41 3.21 16 30 H 0.09 2.12 6.69 -51.93 -0.35 1.77 16 31 H 0.04 0.74 6.13 -51.93 -0.32 0.42 16 32 H -0.01 -0.40 6.83 -51.93 -0.35 -0.75 16 33 H 0.02 0.58 7.85 -51.93 -0.41 0.18 16 34 H 0.27 8.13 7.22 -40.82 -0.29 7.84 16 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -32.72 270.39 -6.66 -39.38 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.95 Total: 0.72 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -0.57 Total: -9.20 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.29 Total: -39.46 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.84 Total: -16.26 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.72 -6.66 -39.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307513306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.013 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds