Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.45806 * 2 1 4 4 C 1.53042 * 109.46535 * 240.02198 * 2 1 3 5 5 C 1.53117 * 109.27877 * 299.16364 * 4 2 1 6 6 C 1.53124 * 109.16202 * 302.34735 * 5 4 2 7 7 H 1.09001 * 109.53183 * 297.69007 * 6 5 4 8 8 C 1.50700 * 109.50300 * 177.59415 * 6 5 4 9 9 O 1.20826 * 119.99880 * 240.19808 * 8 6 5 10 10 O 1.34227 * 119.99716 * 60.19216 * 8 6 5 11 11 C 1.53035 * 109.27858 * 57.65204 * 6 5 4 12 12 N 1.46849 * 109.46459 * 119.96993 * 2 1 3 13 13 C 1.46904 * 110.99541 * 294.17989 * 12 2 1 14 14 C 1.50703 * 109.46874 * 190.25262 * 13 12 2 15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14 20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14 21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14 22 22 H 1.08999 * 109.47398 * 300.03141 * 1 2 3 23 23 H 1.09005 * 109.47078 * 60.03145 * 1 2 3 24 24 H 1.09000 * 109.47270 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.49978 * 179.22413 * 4 2 1 26 26 H 1.08996 * 109.53364 * 59.12546 * 4 2 1 27 27 H 1.08991 * 109.52499 * 182.43552 * 5 4 2 28 28 H 1.09002 * 109.57368 * 62.28094 * 5 4 2 29 29 H 0.96703 * 116.99911 * 179.97438 * 10 8 6 30 30 H 1.09000 * 109.46133 * 180.80840 * 11 6 5 31 31 H 1.09000 * 109.46504 * 60.83766 * 11 6 5 32 32 H 1.09003 * 109.47066 * 70.25538 * 13 12 2 33 33 H 1.08996 * 109.47319 * 310.25011 * 13 12 2 34 34 H 0.96998 * 119.99255 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 6 1.5443 -2.1697 -1.2355 6 6 2.0269 -2.8532 0.0470 7 1 3.1166 -2.8757 0.0601 8 6 1.4939 -4.2619 0.0974 9 8 0.7795 -4.6053 1.0094 10 8 1.8128 -5.1351 -0.8709 11 6 1.5173 -2.0704 1.2592 12 7 2.0193 -0.6917 1.1994 13 6 1.6650 0.0508 2.4165 14 6 2.3898 -0.5438 3.5965 15 1 3.0475 -1.3889 3.4563 16 6 2.2126 -0.0095 4.8551 17 7 1.4113 1.0193 5.0259 18 14 3.1116 -0.7460 6.3175 19 1 2.2774 -1.8142 6.9247 20 1 3.3692 0.3138 7.3253 21 1 4.4029 -1.3233 5.8653 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 3.1298 -0.7093 -1.2574 26 1 1.6644 -0.2167 -2.1402 27 1 1.9409 -2.6990 -2.1018 28 1 0.4549 -2.1833 -1.2676 29 1 1.4474 -6.0272 -0.7952 30 1 1.8712 -2.5464 2.1738 31 1 0.4274 -2.0607 1.2533 32 1 0.5893 -0.0132 2.5810 33 1 1.9535 1.0956 2.3017 34 1 0.9448 1.4019 4.2664 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307513306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = -127.758256 kcal Electronic energy + Delta-G solvation = -16568.042433 eV Core-core repulsion = 13885.100118 eV Total energy + Delta-G solvation = -2682.942315 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.72354 -40.07463 -37.14044 -35.87953 -33.99305 -32.97740 -29.07381 -27.97974 -25.91627 -25.00005 -23.31384 -22.07393 -19.65053 -19.15172 -18.80699 -17.75431 -17.13192 -16.57041 -16.05575 -15.65416 -15.42655 -14.95404 -14.61259 -14.33059 -14.00413 -13.67733 -13.49583 -13.26134 -12.92030 -12.71485 -12.58554 -12.47262 -12.11797 -11.96576 -11.93645 -11.56591 -11.39725 -11.19689 -10.73766 -10.58409 -9.10263 -8.69185 -6.39272 1.15210 1.50524 1.59745 1.77992 1.99904 2.53818 3.12351 3.23728 3.57869 3.78964 3.88277 4.04026 4.20808 4.40242 4.43591 4.53388 4.61660 4.64812 4.77644 4.82256 4.91032 4.98864 5.04713 5.06930 5.18529 5.21431 5.47405 5.56712 5.78526 5.97245 6.34976 6.42140 6.65243 6.97634 7.40202 8.69522 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026462 B = 0.008677 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.884887 B = 3226.132149 C = 3957.787912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.063 3.937 3 H 0.072 0.928 4 C -0.098 4.098 5 C -0.102 4.102 6 C -0.074 4.074 7 H 0.124 0.876 8 C 0.494 3.506 9 O -0.554 6.554 10 O -0.501 6.501 11 C 0.086 3.914 12 N -0.528 5.528 13 C 0.198 3.802 14 C -0.600 4.600 15 H 0.052 0.948 16 C -0.038 4.038 17 N -0.938 5.938 18 Si 1.120 2.880 19 H -0.277 1.277 20 H -0.279 1.279 21 H -0.269 1.269 22 H 0.025 0.975 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.427 0.573 30 H 0.052 0.948 31 H 0.018 0.982 32 H -0.041 1.041 33 H 0.002 0.998 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -8.320 -15.784 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.045 4.045 3 H 0.090 0.910 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.093 4.093 7 H 0.142 0.858 8 C 0.337 3.663 9 O -0.445 6.445 10 O -0.314 6.314 11 C -0.043 4.043 12 N -0.251 5.251 13 C 0.072 3.928 14 C -0.638 4.638 15 H 0.070 0.930 16 C -0.235 4.235 17 N -0.575 5.575 18 Si 0.941 3.059 19 H -0.203 1.203 20 H -0.204 1.204 21 H -0.193 1.193 22 H 0.044 0.956 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.289 0.711 30 H 0.071 0.929 31 H 0.037 0.963 32 H -0.023 1.023 33 H 0.020 0.980 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.003 -7.898 -14.000 16.198 hybrid contribution -1.746 -0.382 -0.953 2.026 sum 0.257 -8.280 -14.953 17.094 Atomic orbital electron populations 1.22424 0.97904 1.01705 1.01764 1.21970 0.92910 0.98352 0.91315 0.90968 1.21568 1.01864 0.94147 0.95927 1.21601 1.01140 0.96281 0.94906 1.21048 1.03566 0.86685 0.98012 0.85787 1.23475 0.76312 0.88403 0.78094 1.90736 1.37349 1.79823 1.36604 1.84479 1.71062 1.27280 1.48561 1.21572 0.96274 0.89557 0.96892 1.62028 1.59083 1.01537 1.02483 1.19458 0.92081 0.92883 0.88421 1.22344 1.29301 1.17954 0.94187 0.92990 1.27373 0.96982 0.95216 1.03959 1.70899 1.28735 1.23767 1.34143 0.82898 0.75467 0.75362 0.72149 1.20277 1.20437 1.19326 0.95626 0.89458 0.92720 0.90396 0.88059 0.87542 0.91705 0.71107 0.92947 0.96338 1.02348 0.97957 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.78 8.18 71.98 0.59 -5.19 16 2 C 0.06 2.11 2.92 44.94 0.13 2.24 16 3 H 0.07 2.49 8.01 -2.39 -0.02 2.47 16 4 C -0.10 -2.28 5.61 30.65 0.17 -2.11 16 5 C -0.10 -2.29 4.91 30.67 0.15 -2.14 16 6 C -0.07 -2.17 2.79 -11.49 -0.03 -2.20 16 7 H 0.12 3.44 8.14 -2.39 -0.02 3.43 16 8 C 0.49 14.08 7.63 71.24 0.54 14.62 16 9 O -0.55 -20.59 16.74 21.96 0.37 -20.22 16 10 O -0.50 -9.50 13.36 -51.39 -0.69 -10.18 16 11 C 0.09 3.51 3.57 86.32 0.31 3.81 16 12 N -0.53 -22.79 4.59 -875.63 -4.02 -26.81 16 13 C 0.20 10.72 3.49 85.56 0.30 11.02 16 14 C -0.60 -35.46 8.43 25.60 0.22 -35.24 16 15 H 0.05 3.06 7.14 -2.91 -0.02 3.04 16 16 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 17 N -0.94 -59.46 13.65 21.45 0.29 -59.17 16 18 Si 1.12 52.34 29.90 68.60 2.05 54.39 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H 0.02 0.97 6.78 -2.39 -0.02 0.95 16 23 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 24 H 0.05 1.77 4.80 -2.39 -0.01 1.76 16 25 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 1.49 6.56 -2.39 -0.02 1.47 16 29 H 0.43 4.34 9.10 -74.06 -0.67 3.67 16 30 H 0.05 2.52 6.69 -2.39 -0.02 2.51 16 31 H 0.02 0.81 6.13 -2.39 -0.01 0.79 16 32 H -0.04 -2.40 6.83 -2.39 -0.02 -2.41 16 33 H 0.00 0.14 7.85 -2.39 -0.02 0.12 16 34 H 0.25 16.26 7.22 -92.71 -0.67 15.59 16 Total: -1.00 -74.16 270.39 1.37 -72.79 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.53 Total: 6.20 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 2.84 Total: -16.99 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -3.73 Total: -85.98 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.32 Total: -30.41 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Total: -74.16 1.37 -72.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307513306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.972 kcal (2) G-P(sol) polarization free energy of solvation -74.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds