Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 N 1.46494 * 109.46961 * 240.00048 * 2 1 3 5 5 C 1.34780 * 119.99757 * 234.85219 * 4 2 1 6 6 O 1.21690 * 120.00215 * 184.46448 * 5 4 2 7 7 C 1.46374 * 120.00084 * 4.45970 * 5 4 2 8 8 H 1.07997 * 120.00258 * 337.63238 * 7 5 4 9 9 C 1.40050 * 120.00319 * 157.62250 * 7 5 4 10 10 N 1.30670 * 120.00111 * 169.87212 * 9 7 5 11 11 Si 1.86804 * 119.99851 * 349.88034 * 9 7 5 12 12 H 1.48494 * 109.47278 * 90.44255 * 11 9 7 13 13 H 1.48501 * 109.46826 * 210.44952 * 11 9 7 14 14 H 1.48501 * 109.46950 * 330.44448 * 11 9 7 15 15 C 1.46493 * 120.00713 * 54.85863 * 4 2 1 16 16 H 1.09011 * 110.45338 * 357.38959 * 15 4 2 17 17 C 1.54501 * 110.51945 * 119.99425 * 15 4 2 18 18 C 1.54480 * 104.06341 * 118.64330 * 17 15 4 19 19 O 1.44428 * 104.80289 * 23.98535 * 18 17 15 20 20 C 1.44418 * 105.27148 * 319.48588 * 19 18 17 21 21 H 1.08998 * 109.46670 * 60.00322 * 1 2 3 22 22 H 1.08998 * 109.46989 * 300.00347 * 1 2 3 23 23 H 1.08997 * 109.46351 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47120 * 119.99400 * 2 1 3 25 25 H 1.08998 * 109.47010 * 59.99754 * 3 2 1 26 26 H 1.08993 * 109.47479 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46867 * 300.00224 * 3 2 1 28 28 H 0.96999 * 119.99636 * 180.02562 * 10 9 7 29 29 H 1.09000 * 110.51562 * 237.29506 * 17 15 4 30 30 H 1.09007 * 110.50980 * 359.87002 * 17 15 4 31 31 H 1.09000 * 110.37064 * 142.81257 * 18 17 15 32 32 H 1.08996 * 110.37800 * 265.15298 * 18 17 15 33 33 H 1.09002 * 110.37397 * 281.67869 * 20 19 18 34 34 H 1.09004 * 110.37488 * 159.34070 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8765 -1.7228 -1.0752 6 8 3.3453 -2.2441 -2.0698 7 6 3.2446 -2.2168 0.2526 8 1 3.1433 -1.5746 1.1150 9 6 3.7282 -3.5223 0.4049 10 7 4.2411 -3.9002 1.5458 11 14 3.6401 -4.7234 -1.0231 12 1 4.8863 -4.6309 -1.8253 13 1 3.4898 -6.1048 -0.4994 14 1 2.4741 -4.3892 -1.8798 15 6 1.5741 -0.2592 -2.5238 16 1 0.8513 0.5523 -2.4386 17 6 2.7812 0.1789 -3.3829 18 6 2.7628 -0.7961 -4.5810 19 8 1.3930 -1.2452 -4.6703 20 6 0.9691 -1.4470 -3.3046 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 4.5763 -4.8043 1.6510 29 1 2.6541 1.2062 -3.7244 30 1 3.7084 0.0768 -2.8190 31 1 3.0529 -0.2788 -5.4956 32 1 3.4273 -1.6396 -4.3941 33 1 1.3585 -2.3904 -2.9218 34 1 -0.1188 -1.4298 -3.2384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336504332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = -88.555600 kcal Electronic energy + Delta-G solvation = -17140.062894 eV Core-core repulsion = 14458.820534 eV Total energy + Delta-G solvation = -2681.242360 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64837 -37.30275 -35.44442 -32.89797 -31.65893 -29.71855 -28.30371 -26.75544 -26.17794 -22.50981 -21.41360 -21.03449 -18.67516 -16.80899 -16.22186 -15.54188 -15.34614 -14.75687 -14.30888 -14.02980 -13.52114 -13.42883 -12.74012 -12.58372 -12.35610 -12.10217 -11.93438 -11.62334 -11.36870 -11.07867 -10.90935 -10.76429 -10.71878 -10.57642 -10.29486 -10.11502 -9.50010 -9.27048 -8.99407 -7.82960 -7.57887 -6.64102 -4.83051 3.39971 3.44476 3.65156 4.01520 4.13449 4.43702 4.65919 5.14183 5.23295 5.36533 5.39160 5.55301 5.72077 5.75451 5.81371 5.83979 5.92302 6.06052 6.13510 6.18543 6.23355 6.34736 6.49623 6.53151 6.60541 6.64274 6.70584 7.07667 7.25242 7.68209 7.89614 8.29444 8.70363 9.10915 10.01141 10.37590 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.013666 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.310896 B = 2048.402932 C = 2831.655739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.620 5.620 5 C 0.558 3.442 6 O -0.607 6.607 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.106 3.894 10 N -0.830 5.830 11 Si 0.954 3.046 12 H -0.277 1.277 13 H -0.317 1.317 14 H -0.263 1.263 15 C 0.128 3.872 16 H 0.083 0.917 17 C -0.155 4.155 18 C 0.055 3.945 19 O -0.386 6.386 20 C 0.036 3.964 21 H 0.048 0.952 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.281 0.719 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 7.714 -3.893 10.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.217 4.217 4 N -0.354 5.354 5 C 0.367 3.633 6 O -0.498 6.498 7 C -0.572 4.572 8 H 0.108 0.892 9 C -0.112 4.112 10 N -0.460 5.460 11 Si 0.785 3.215 12 H -0.203 1.203 13 H -0.248 1.248 14 H -0.188 1.188 15 C 0.023 3.977 16 H 0.101 0.899 17 C -0.194 4.194 18 C -0.022 4.022 19 O -0.305 6.305 20 C -0.042 4.042 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.128 0.872 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.584 7.328 -4.434 10.224 hybrid contribution 0.114 -0.329 -0.183 0.393 sum -5.470 6.999 -4.616 10.011 Atomic orbital electron populations 1.22174 0.96526 1.02058 1.00969 1.21045 0.92909 0.92378 0.90676 1.22187 1.01752 0.96967 1.00828 1.47809 1.48548 1.35721 1.03308 1.18309 0.77058 0.77576 0.90394 1.90279 1.58854 1.59789 1.40860 1.20759 1.43953 0.99991 0.92501 0.89181 1.25665 0.89657 0.99037 0.96839 1.69563 1.30651 1.19960 1.25846 0.85460 0.81081 0.74898 0.80015 1.20265 1.24792 1.18808 1.21955 0.95028 0.96049 0.84687 0.89883 1.23156 1.00564 0.98202 0.97458 1.23284 0.84442 0.97421 0.97040 1.88968 1.27713 1.88124 1.25676 1.23846 0.98517 1.00088 0.81728 0.93317 0.92377 0.92237 0.87219 0.92527 0.92433 0.93421 0.90889 0.92142 0.89682 0.90750 0.90848 0.89933 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.10 37.16 0.34 -1.95 16 2 C 0.13 2.32 3.11 -67.93 -0.21 2.11 16 3 C -0.16 -2.34 9.26 37.16 0.34 -1.99 16 4 N -0.62 -12.61 2.36 -158.46 -0.37 -12.98 16 5 C 0.56 13.94 5.98 -12.99 -0.08 13.87 16 6 O -0.61 -16.23 8.65 5.20 0.04 -16.18 16 7 C -0.54 -14.48 9.15 -35.63 -0.33 -14.80 16 8 H 0.09 2.44 6.18 -52.49 -0.32 2.11 16 9 C 0.11 2.93 5.52 -17.37 -0.10 2.83 16 10 N -0.83 -23.16 13.92 55.55 0.77 -22.39 16 11 Si 0.95 24.55 26.03 -169.99 -4.43 20.12 16 12 H -0.28 -7.34 7.11 56.52 0.40 -6.93 16 13 H -0.32 -7.83 7.11 56.52 0.40 -7.43 16 14 H -0.26 -7.01 6.69 56.52 0.38 -6.63 16 15 C 0.13 2.33 2.69 -66.37 -0.18 2.16 16 16 H 0.08 1.31 6.19 -51.92 -0.32 0.99 16 17 C -0.15 -2.75 6.08 -25.17 -0.15 -2.90 16 18 C 0.05 1.00 7.21 37.93 0.27 1.28 16 19 O -0.39 -7.61 11.65 -35.23 -0.41 -8.02 16 20 C 0.04 0.70 6.93 37.94 0.26 0.96 16 21 H 0.05 0.65 6.74 -51.93 -0.35 0.29 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.11 2.14 5.31 -51.93 -0.28 1.86 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 28 H 0.28 7.25 8.29 -40.82 -0.34 6.91 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.70 7.16 -51.93 -0.37 1.33 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.53 7.11 -51.93 -0.37 1.16 16 33 H 0.08 1.92 6.03 -51.93 -0.31 1.60 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 266.04 15.07 4.01 4.01 Total: -1.00 -29.68 266.04 -5.04 -34.72 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.83 Total: -0.82 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.18 Total: 1.55 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.40 Total: -35.37 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.37 Total: -24.20 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.43 Total: 20.12 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.68 -5.04 -34.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336504332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.837 kcal (2) G-P(sol) polarization free energy of solvation -29.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds