Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47073 * 2 1 4 4 N 1.46494 * 109.46961 * 240.00048 * 2 1 3 5 5 C 1.34780 * 119.99757 * 234.85219 * 4 2 1 6 6 O 1.21690 * 120.00215 * 184.46448 * 5 4 2 7 7 C 1.46374 * 120.00084 * 4.45970 * 5 4 2 8 8 H 1.07997 * 120.00258 * 337.63238 * 7 5 4 9 9 C 1.40050 * 120.00319 * 157.62250 * 7 5 4 10 10 N 1.30670 * 120.00111 * 169.87212 * 9 7 5 11 11 Si 1.86804 * 119.99851 * 349.88034 * 9 7 5 12 12 H 1.48494 * 109.47278 * 90.44255 * 11 9 7 13 13 H 1.48501 * 109.46826 * 210.44952 * 11 9 7 14 14 H 1.48501 * 109.46950 * 330.44448 * 11 9 7 15 15 C 1.46493 * 120.00713 * 54.85863 * 4 2 1 16 16 H 1.09011 * 110.45338 * 357.38959 * 15 4 2 17 17 C 1.54501 * 110.51945 * 119.99425 * 15 4 2 18 18 C 1.54480 * 104.06341 * 118.64330 * 17 15 4 19 19 O 1.44428 * 104.80289 * 23.98535 * 18 17 15 20 20 C 1.44418 * 105.27148 * 319.48588 * 19 18 17 21 21 H 1.08998 * 109.46670 * 60.00322 * 1 2 3 22 22 H 1.08998 * 109.46989 * 300.00347 * 1 2 3 23 23 H 1.08997 * 109.46351 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47120 * 119.99400 * 2 1 3 25 25 H 1.08998 * 109.47010 * 59.99754 * 3 2 1 26 26 H 1.08993 * 109.47479 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.46867 * 300.00224 * 3 2 1 28 28 H 0.96999 * 119.99636 * 180.02562 * 10 9 7 29 29 H 1.09000 * 110.51562 * 237.29506 * 17 15 4 30 30 H 1.09007 * 110.50980 * 359.87002 * 17 15 4 31 31 H 1.09000 * 110.37064 * 142.81257 * 18 17 15 32 32 H 1.08996 * 110.37800 * 265.15298 * 18 17 15 33 33 H 1.09002 * 110.37397 * 281.67869 * 20 19 18 34 34 H 1.09004 * 110.37488 * 159.34070 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8765 -1.7228 -1.0752 6 8 3.3453 -2.2441 -2.0698 7 6 3.2446 -2.2168 0.2526 8 1 3.1433 -1.5746 1.1150 9 6 3.7282 -3.5223 0.4049 10 7 4.2411 -3.9002 1.5458 11 14 3.6401 -4.7234 -1.0231 12 1 4.8863 -4.6309 -1.8253 13 1 3.4898 -6.1048 -0.4994 14 1 2.4741 -4.3892 -1.8798 15 6 1.5741 -0.2592 -2.5238 16 1 0.8513 0.5523 -2.4386 17 6 2.7812 0.1789 -3.3829 18 6 2.7628 -0.7961 -4.5810 19 8 1.3930 -1.2452 -4.6703 20 6 0.9691 -1.4470 -3.3046 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 4.5763 -4.8043 1.6510 29 1 2.6541 1.2062 -3.7244 30 1 3.7084 0.0768 -2.8190 31 1 3.0529 -0.2788 -5.4956 32 1 3.4273 -1.6396 -4.3941 33 1 1.3585 -2.3904 -2.9218 34 1 -0.1188 -1.4298 -3.2384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336504332.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = -109.038335 kcal Electronic energy + Delta-G solvation = -17140.951092 eV Core-core repulsion = 14458.820534 eV Total energy + Delta-G solvation = -2682.130558 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.26857 -38.97061 -37.11076 -34.98603 -33.14025 -31.26607 -29.92049 -28.12811 -27.89081 -24.06338 -23.05231 -22.47183 -20.47670 -18.43605 -18.12547 -17.19386 -16.95854 -16.52293 -15.98402 -15.60144 -15.14040 -14.81388 -14.57848 -14.17685 -14.04873 -13.76510 -13.19515 -13.18079 -13.00759 -12.76494 -12.46249 -12.44559 -12.10470 -12.00931 -11.92863 -11.72733 -11.32507 -11.17306 -10.79105 -9.78552 -9.24832 -8.77036 -6.94376 1.30280 1.33736 1.55258 2.09586 2.26625 2.52843 3.17267 3.31461 3.75726 3.85913 4.03987 4.17883 4.34854 4.39866 4.42152 4.50820 4.69111 4.76601 4.82633 4.85358 4.96321 5.01554 5.06491 5.09102 5.17188 5.25339 5.37299 5.50758 5.71226 5.76900 6.13286 6.30616 6.67115 7.18446 8.05616 8.29804 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.022735 B = 0.013666 C = 0.009886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.310896 B = 2048.402932 C = 2831.655739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.124 3.876 3 C -0.149 4.149 4 N -0.615 5.615 5 C 0.559 3.441 6 O -0.628 6.628 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.856 5.856 11 Si 0.997 3.003 12 H -0.291 1.291 13 H -0.299 1.299 14 H -0.282 1.282 15 C 0.127 3.873 16 H 0.123 0.877 17 C -0.150 4.150 18 C 0.053 3.947 19 O -0.391 6.391 20 C 0.035 3.965 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.289 0.711 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 9.784 -4.663 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.207 4.207 4 N -0.348 5.348 5 C 0.365 3.635 6 O -0.520 6.520 7 C -0.590 4.590 8 H 0.099 0.901 9 C -0.140 4.140 10 N -0.488 5.488 11 Si 0.829 3.171 12 H -0.218 1.218 13 H -0.229 1.229 14 H -0.208 1.208 15 C 0.022 3.978 16 H 0.141 0.859 17 C -0.189 4.189 18 C -0.024 4.024 19 O -0.310 6.310 20 C -0.043 4.043 21 H 0.087 0.913 22 H 0.103 0.897 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.200 9.413 -5.183 12.935 hybrid contribution 0.586 -0.901 0.033 1.076 sum -6.614 8.512 -5.151 11.947 Atomic orbital electron populations 1.22094 0.93693 1.01753 1.03296 1.21263 0.95131 0.93332 0.88185 1.22090 1.00404 0.95140 1.03103 1.47732 1.47037 1.34464 1.05537 1.18142 0.77508 0.78647 0.89249 1.90268 1.59688 1.60875 1.41146 1.20997 1.44464 1.00032 0.93477 0.90051 1.26110 0.89904 1.00129 0.97880 1.69576 1.31880 1.20813 1.26493 0.84843 0.79311 0.74893 0.78054 1.21839 1.22872 1.20797 1.22218 0.95987 0.96470 0.83124 0.85901 1.23136 0.98940 1.00142 0.96653 1.23340 0.83327 0.96601 0.99125 1.88965 1.28139 1.88171 1.25707 1.23811 1.00075 0.98542 0.81853 0.91265 0.89727 0.93904 0.90223 0.89870 0.94509 0.91466 0.90106 0.88196 0.92520 0.87199 0.94510 0.94457 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 9.10 71.98 0.66 -3.18 16 2 C 0.12 4.07 3.11 45.00 0.14 4.21 16 3 C -0.15 -3.92 9.26 71.98 0.67 -3.26 16 4 N -0.62 -24.39 2.36 -773.45 -1.83 -26.22 16 5 C 0.56 28.34 5.98 86.36 0.52 28.85 16 6 O -0.63 -34.36 8.65 -4.32 -0.04 -34.39 16 7 C -0.55 -30.65 9.15 24.83 0.23 -30.42 16 8 H 0.08 4.56 6.18 -2.91 -0.02 4.54 16 9 C 0.07 4.22 5.52 85.31 0.47 4.69 16 10 N -0.86 -48.57 13.92 21.84 0.30 -48.27 16 11 Si 1.00 51.84 26.03 68.60 1.79 53.62 16 12 H -0.29 -15.69 7.11 99.48 0.71 -14.98 16 13 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.28 -15.38 6.69 99.48 0.67 -14.72 16 15 C 0.13 4.26 2.69 46.01 0.12 4.38 16 16 H 0.12 3.22 6.19 -2.38 -0.01 3.20 16 17 C -0.15 -4.96 6.08 31.61 0.19 -4.77 16 18 C 0.05 1.85 7.21 72.49 0.52 2.37 16 19 O -0.39 -14.68 11.65 -148.98 -1.74 -16.41 16 20 C 0.03 1.30 6.93 72.49 0.50 1.81 16 21 H 0.07 1.49 6.74 -2.39 -0.02 1.47 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 3.11 5.31 -2.39 -0.01 3.10 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.51 7.45 -2.38 -0.02 1.50 16 28 H 0.29 15.06 8.29 -92.71 -0.77 14.29 16 29 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.22 7.16 -2.38 -0.02 2.20 16 31 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.04 1.55 7.11 -2.39 -0.02 1.54 16 33 H 0.04 1.75 6.03 -2.39 -0.01 1.73 16 34 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -65.85 266.04 3.55 -62.30 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.05 Total: 4.69 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 4.02 Total: 4.68 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.53 Total: -74.49 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -1.77 Total: -50.80 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.79 Total: 53.62 kcal Total: -65.85 3.55 -62.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336504332.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.740 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds