Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08990 * 110.00027 * 306.57282 * 3 2 1 5 5 C 1.54311 * 109.77394 * 67.72693 * 3 2 1 6 6 H 1.09010 * 110.92533 * 23.47036 * 5 3 2 7 7 C 1.52994 * 110.74476 * 260.21505 * 5 3 2 8 8 O 1.42902 * 109.47571 * 180.10323 * 7 5 3 9 9 C 1.55159 * 102.86471 * 141.88393 * 5 3 2 10 10 C 1.54906 * 101.58097 * 324.30310 * 9 5 3 11 11 N 1.47026 * 109.88251 * 185.47343 * 3 2 1 12 12 C 1.34776 * 125.64814 * 61.67866 * 11 3 2 13 13 O 1.21692 * 120.00033 * 354.24469 * 12 11 3 14 14 C 1.46379 * 119.99996 * 174.23901 * 12 11 3 15 15 H 1.07996 * 119.99808 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99776 * 179.72733 * 14 12 11 17 17 N 1.30676 * 120.00216 * 0.27534 * 16 14 12 18 18 Si 1.86795 * 119.99833 * 180.27990 * 16 14 12 19 19 H 1.48495 * 109.47436 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47050 * 119.99946 * 18 16 14 21 21 H 1.48502 * 109.46940 * 239.99735 * 18 16 14 22 22 H 1.09002 * 109.47228 * 61.89937 * 1 2 3 23 23 H 1.09006 * 109.47404 * 181.90131 * 1 2 3 24 24 H 1.09005 * 109.47300 * 301.90302 * 1 2 3 25 25 H 1.09006 * 109.47337 * 240.00527 * 2 1 3 26 26 H 1.09000 * 109.47668 * 119.99879 * 2 1 3 27 27 H 1.08997 * 109.47314 * 300.10747 * 7 5 3 28 28 H 1.09008 * 109.47449 * 60.10460 * 7 5 3 29 29 H 0.96697 * 114.00235 * 179.97438 * 8 7 5 30 30 H 1.09009 * 111.00288 * 206.23063 * 9 5 3 31 31 H 1.09000 * 111.00489 * 82.37894 * 9 5 3 32 32 H 1.08998 * 110.36947 * 278.16828 * 10 9 5 33 33 H 1.09007 * 110.45822 * 155.89613 * 10 9 5 34 34 H 0.96992 * 120.00200 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5888 1.9974 -0.8225 5 6 1.6950 2.1182 1.3438 6 1 1.5559 1.3749 2.1289 7 6 0.4494 2.9957 1.2052 8 8 0.1564 3.6090 2.4622 9 6 2.9496 2.9864 1.6259 10 6 4.0814 2.0880 1.0680 11 7 3.5042 1.4552 -0.1319 12 6 4.2027 0.9733 -1.1789 13 8 3.6278 0.3812 -2.0732 14 6 5.6530 1.1623 -1.2404 15 1 6.1632 1.6875 -0.4466 16 6 6.3796 0.6566 -2.3256 17 7 5.7622 0.0207 -3.2859 18 14 8.2313 0.8909 -2.4003 19 1 8.6846 1.6377 -1.1995 20 1 8.8970 -0.4360 -2.4379 21 1 8.5844 1.6568 -3.6226 22 1 -0.3634 0.4841 -0.9065 23 1 -0.3634 -1.0271 0.0341 24 1 -0.3634 0.5431 0.8725 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 0.6304 3.7679 0.4575 28 1 -0.3956 2.3808 0.8952 29 1 -0.6228 4.1814 2.4484 30 1 3.0757 3.1548 2.6955 31 1 2.8996 3.9322 1.0864 32 1 4.3598 1.3299 1.8000 33 1 4.9488 2.6909 0.7988 34 1 6.2655 -0.3299 -4.0373 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386343685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = -97.866134 kcal Electronic energy + Delta-G solvation = -16462.520051 eV Core-core repulsion = 13780.873955 eV Total energy + Delta-G solvation = -2681.646095 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.17264 -36.77126 -35.44451 -32.92678 -32.46704 -30.79227 -27.81433 -26.74031 -24.81555 -22.20084 -21.40437 -20.12308 -18.87854 -17.06469 -16.56054 -15.72816 -15.38923 -14.59184 -14.25519 -13.76896 -13.59582 -13.34104 -12.69519 -12.43126 -12.41187 -11.88522 -11.63239 -11.36550 -11.24795 -10.97740 -10.80590 -10.64509 -10.53794 -10.30219 -10.28743 -10.12670 -9.91907 -9.63609 -8.85046 -7.56728 -7.15163 -6.18865 -4.63155 3.12978 3.21245 3.25763 4.05315 4.23312 4.55985 4.63222 4.98583 5.16034 5.29870 5.48204 5.53308 5.64241 5.73071 5.76610 5.85940 5.90264 5.98169 6.10224 6.19982 6.33994 6.44152 6.47215 6.59724 6.72059 6.83551 7.05716 7.45028 7.45907 7.63763 8.14530 8.44701 9.03062 9.52809 10.58845 10.78130 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.007596 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.363121 B = 3685.276481 C = 4225.097515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.157 3.843 4 H 0.056 0.944 5 C -0.097 4.097 6 H 0.084 0.916 7 C 0.083 3.917 8 O -0.573 6.573 9 C -0.123 4.123 10 C 0.116 3.884 11 N -0.641 5.641 12 C 0.573 3.427 13 O -0.573 6.573 14 C -0.539 4.539 15 H 0.070 0.930 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.374 0.626 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 5.239 8.696 12.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.074 0.926 5 C -0.116 4.116 6 H 0.102 0.898 7 C 0.006 3.994 8 O -0.378 6.378 9 C -0.161 4.161 10 C -0.009 4.009 11 N -0.381 5.381 12 C 0.380 3.620 13 O -0.456 6.456 14 C -0.576 4.576 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.220 0.780 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.195 4.429 8.103 11.706 hybrid contribution 0.423 0.437 -0.171 0.631 sum -6.772 4.866 7.932 11.509 Atomic orbital electron populations 1.21830 0.96781 1.01035 1.01005 1.21939 0.94425 0.97643 1.03387 1.21063 0.84641 0.94856 0.94273 0.92597 1.22246 0.93724 0.97292 0.98301 0.89779 1.22322 0.96958 0.95225 0.84928 1.86477 1.51270 1.66493 1.33565 1.22779 0.94463 0.98112 1.00750 1.21931 0.96044 0.94794 0.88113 1.48751 1.03493 1.65354 1.20492 1.18006 0.87557 0.77892 0.78592 1.90586 1.71314 1.45254 1.38412 1.20953 0.90559 1.38432 1.07651 0.91215 1.25724 0.99827 0.93086 0.94616 1.70030 1.36324 1.26454 1.06927 0.86324 0.83085 0.78569 0.78857 1.18749 1.20152 1.20155 0.93025 0.93204 0.93117 0.89503 0.92785 0.93590 0.93180 0.77977 0.90897 0.91380 0.93610 0.91133 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.31 37.15 0.35 -1.87 16 2 C -0.14 -2.59 5.41 -26.73 -0.14 -2.74 16 3 C 0.16 3.08 2.54 -66.96 -0.17 2.91 16 4 H 0.06 1.16 7.83 -51.93 -0.41 0.75 16 5 C -0.10 -1.52 2.16 -88.79 -0.19 -1.71 16 6 H 0.08 1.32 7.77 -51.92 -0.40 0.92 16 7 C 0.08 1.08 6.15 37.15 0.23 1.31 16 8 O -0.57 -6.88 13.51 -35.23 -0.48 -7.36 16 9 C -0.12 -1.94 6.38 -24.58 -0.16 -2.10 16 10 C 0.12 2.22 6.63 -2.53 -0.02 2.21 16 11 N -0.64 -15.00 3.07 -164.67 -0.50 -15.51 16 12 C 0.57 16.54 7.60 -12.99 -0.10 16.44 16 13 O -0.57 -18.50 13.78 5.20 0.07 -18.43 16 14 C -0.54 -15.39 9.01 -35.63 -0.32 -15.71 16 15 H 0.07 1.84 6.53 -52.49 -0.34 1.50 16 16 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 17 N -0.77 -23.11 11.83 55.55 0.66 -22.46 16 18 Si 0.91 20.28 29.56 -169.99 -5.02 15.25 16 19 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.66 5.79 -51.93 -0.30 0.36 16 25 H 0.09 2.04 6.52 -51.93 -0.34 1.70 16 26 H 0.05 1.01 8.01 -51.93 -0.42 0.59 16 27 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.05 0.59 5.97 -51.92 -0.31 0.28 16 29 H 0.37 2.65 9.12 45.56 0.42 3.07 16 30 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.07 1.06 8.02 -51.93 -0.42 0.65 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 1.37 6.94 -51.93 -0.36 1.01 16 34 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 275.21 15.07 4.15 4.15 Total: -1.00 -34.41 275.21 -5.87 -40.28 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.12 Total: 2.99 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -0.62 Total: 1.08 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.15 Total: -37.96 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.40 Total: -25.79 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -34.41 -5.87 -40.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386343685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.587 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds