Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08990 * 110.00027 * 306.57282 * 3 2 1 5 5 C 1.54311 * 109.77394 * 67.72693 * 3 2 1 6 6 H 1.09010 * 110.92533 * 23.47036 * 5 3 2 7 7 C 1.52994 * 110.74476 * 260.21505 * 5 3 2 8 8 O 1.42902 * 109.47571 * 180.10323 * 7 5 3 9 9 C 1.55159 * 102.86471 * 141.88393 * 5 3 2 10 10 C 1.54906 * 101.58097 * 324.30310 * 9 5 3 11 11 N 1.47026 * 109.88251 * 185.47343 * 3 2 1 12 12 C 1.34776 * 125.64814 * 61.67866 * 11 3 2 13 13 O 1.21692 * 120.00033 * 354.24469 * 12 11 3 14 14 C 1.46379 * 119.99996 * 174.23901 * 12 11 3 15 15 H 1.07996 * 119.99808 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99776 * 179.72733 * 14 12 11 17 17 N 1.30676 * 120.00216 * 0.27534 * 16 14 12 18 18 Si 1.86795 * 119.99833 * 180.27990 * 16 14 12 19 19 H 1.48495 * 109.47436 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47050 * 119.99946 * 18 16 14 21 21 H 1.48502 * 109.46940 * 239.99735 * 18 16 14 22 22 H 1.09002 * 109.47228 * 61.89937 * 1 2 3 23 23 H 1.09006 * 109.47404 * 181.90131 * 1 2 3 24 24 H 1.09005 * 109.47300 * 301.90302 * 1 2 3 25 25 H 1.09006 * 109.47337 * 240.00527 * 2 1 3 26 26 H 1.09000 * 109.47668 * 119.99879 * 2 1 3 27 27 H 1.08997 * 109.47314 * 300.10747 * 7 5 3 28 28 H 1.09008 * 109.47449 * 60.10460 * 7 5 3 29 29 H 0.96697 * 114.00235 * 179.97438 * 8 7 5 30 30 H 1.09009 * 111.00288 * 206.23063 * 9 5 3 31 31 H 1.09000 * 111.00489 * 82.37894 * 9 5 3 32 32 H 1.08998 * 110.36947 * 278.16828 * 10 9 5 33 33 H 1.09007 * 110.45822 * 155.89613 * 10 9 5 34 34 H 0.96992 * 120.00200 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5888 1.9974 -0.8225 5 6 1.6950 2.1182 1.3438 6 1 1.5559 1.3749 2.1289 7 6 0.4494 2.9957 1.2052 8 8 0.1564 3.6090 2.4622 9 6 2.9496 2.9864 1.6259 10 6 4.0814 2.0880 1.0680 11 7 3.5042 1.4552 -0.1319 12 6 4.2027 0.9733 -1.1789 13 8 3.6278 0.3812 -2.0732 14 6 5.6530 1.1623 -1.2404 15 1 6.1632 1.6875 -0.4466 16 6 6.3796 0.6566 -2.3256 17 7 5.7622 0.0207 -3.2859 18 14 8.2313 0.8909 -2.4003 19 1 8.6846 1.6377 -1.1995 20 1 8.8970 -0.4360 -2.4379 21 1 8.5844 1.6568 -3.6226 22 1 -0.3634 0.4841 -0.9065 23 1 -0.3634 -1.0271 0.0341 24 1 -0.3634 0.5431 0.8725 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 0.6304 3.7679 0.4575 28 1 -0.3956 2.3808 0.8952 29 1 -0.6228 4.1814 2.4484 30 1 3.0757 3.1548 2.6955 31 1 2.8996 3.9322 1.0864 32 1 4.3598 1.3299 1.8000 33 1 4.9488 2.6909 0.7988 34 1 6.2655 -0.3299 -4.0373 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386343685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = -124.560611 kcal Electronic energy + Delta-G solvation = -16463.677610 eV Core-core repulsion = 13780.873955 eV Total energy + Delta-G solvation = -2682.803655 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76213 -38.32482 -36.96255 -34.69113 -34.36672 -32.37122 -29.22358 -28.70191 -26.35451 -23.72072 -22.94498 -21.62820 -20.59706 -18.48887 -18.04973 -17.65747 -16.92850 -16.16465 -15.84148 -15.37722 -15.08214 -14.70930 -14.39081 -14.05925 -13.88615 -13.32903 -13.23720 -13.00070 -12.81016 -12.69802 -12.56278 -12.33698 -12.03445 -11.95494 -11.69668 -11.56509 -11.41508 -10.95534 -10.70971 -9.78612 -9.06914 -8.30416 -6.85845 1.37775 1.38052 1.55955 2.21920 2.44512 2.79951 3.25870 3.54873 3.74642 3.85525 4.06575 4.19069 4.26268 4.43521 4.45013 4.51628 4.57312 4.69032 4.80228 4.82655 4.95563 5.08731 5.15536 5.18336 5.30914 5.31766 5.36440 5.48953 5.68234 6.06762 6.44807 6.85829 6.97102 7.49522 8.46671 8.66580 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.007596 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.363121 B = 3685.276481 C = 4225.097515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.150 3.850 4 H 0.040 0.960 5 C -0.086 4.086 6 H 0.091 0.909 7 C 0.092 3.908 8 O -0.582 6.582 9 C -0.109 4.109 10 C 0.108 3.892 11 N -0.651 5.651 12 C 0.555 3.445 13 O -0.623 6.623 14 C -0.568 4.568 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.822 5.822 18 Si 0.997 3.003 19 H -0.248 1.248 20 H -0.268 1.268 21 H -0.267 1.267 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.515 6.608 10.758 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.045 3.955 4 H 0.058 0.942 5 C -0.105 4.105 6 H 0.109 0.891 7 C 0.014 3.986 8 O -0.390 6.390 9 C -0.147 4.147 10 C -0.015 4.015 11 N -0.388 5.388 12 C 0.361 3.639 13 O -0.510 6.510 14 C -0.604 4.604 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.816 3.184 19 H -0.171 1.171 20 H -0.193 1.193 21 H -0.192 1.192 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.248 0.752 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.258 5.840 10.228 13.835 hybrid contribution 0.358 0.023 -0.762 0.842 sum -6.900 5.863 9.466 13.099 Atomic orbital electron populations 1.21749 0.93089 1.02422 1.02271 1.21832 0.97652 0.96813 1.00696 1.21263 0.82400 0.95432 0.96356 0.94208 1.22134 0.95251 0.97643 0.95472 0.89059 1.22100 0.95881 0.95116 0.85510 1.86402 1.52950 1.67083 1.32587 1.22727 0.92624 0.97231 1.02128 1.22165 0.97277 0.95400 0.86701 1.48594 1.05492 1.64307 1.20385 1.18339 0.88404 0.77836 0.79311 1.90535 1.72378 1.47389 1.40727 1.21450 0.91107 1.39139 1.08710 0.89728 1.26980 1.06154 0.91913 0.93562 1.70194 1.39248 1.27746 1.07998 0.84987 0.74848 0.78980 0.79591 1.17063 1.19254 1.19176 0.93042 0.91967 0.90321 0.94879 0.92711 0.93520 0.91730 0.75218 0.88137 0.91077 0.92898 0.91769 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.31 71.98 0.67 -3.25 16 2 C -0.13 -5.14 5.41 30.59 0.17 -4.98 16 3 C 0.15 5.92 2.54 45.34 0.11 6.04 16 4 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16 5 C -0.09 -2.51 2.16 -9.61 -0.02 -2.53 16 6 H 0.09 2.58 7.77 -2.38 -0.02 2.56 16 7 C 0.09 2.08 6.15 71.98 0.44 2.52 16 8 O -0.58 -11.51 13.51 -148.98 -2.01 -13.53 16 9 C -0.11 -3.18 6.38 31.99 0.20 -2.98 16 10 C 0.11 4.08 6.63 86.85 0.58 4.65 16 11 N -0.65 -31.18 3.07 -793.11 -2.43 -33.61 16 12 C 0.55 33.48 7.60 86.36 0.66 34.13 16 13 O -0.62 -42.75 13.78 -4.32 -0.06 -42.81 16 14 C -0.57 -33.23 9.01 24.83 0.22 -33.01 16 15 H 0.08 4.51 6.53 -2.91 -0.02 4.49 16 16 C 0.03 1.64 5.50 85.30 0.47 2.11 16 17 N -0.82 -51.33 11.83 21.84 0.26 -51.07 16 18 Si 1.00 41.85 29.56 68.60 2.03 43.88 16 19 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.08 1.81 5.79 -2.38 -0.01 1.79 16 25 H 0.03 1.64 6.52 -2.38 -0.02 1.63 16 26 H 0.05 2.07 8.01 -2.39 -0.02 2.05 16 27 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 28 H 0.06 1.29 5.97 -2.38 -0.01 1.27 16 29 H 0.40 3.92 9.12 -74.06 -0.68 3.25 16 30 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.07 2.05 8.02 -2.39 -0.02 2.03 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 33 H 0.06 2.48 6.94 -2.38 -0.02 2.46 16 34 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 Total: -1.00 -78.91 275.21 1.71 -77.20 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.43 Total: 17.23 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 3.50 Total: 2.71 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -2.17 Total: -84.68 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -2.07 Total: -56.33 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -78.91 1.71 -77.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386343685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.365 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds