Wall clock time and date at job start Mon Mar 30 2020 03:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.47713 * 2 1 4 4 C 1.53093 * 109.48161 * 239.98330 * 2 1 3 5 5 C 1.53181 * 109.16380 * 182.39521 * 4 2 1 6 6 C 1.53175 * 109.03664 * 56.97529 * 5 4 2 7 7 H 1.08997 * 109.52794 * 183.04850 * 6 5 4 8 8 N 1.46505 * 109.52191 * 62.92653 * 6 5 4 9 9 C 1.46498 * 120.00108 * 242.71286 * 8 6 5 10 10 C 1.34775 * 120.00008 * 62.71132 * 8 6 5 11 11 O 1.21694 * 119.99693 * 359.97438 * 10 8 6 12 12 C 1.46375 * 120.00203 * 179.97438 * 10 8 6 13 13 H 1.08005 * 119.99801 * 5.06838 * 12 10 8 14 14 C 1.40046 * 120.00008 * 185.06333 * 12 10 8 15 15 N 1.30674 * 120.00141 * 5.20604 * 14 12 10 16 16 Si 1.86801 * 119.99905 * 185.20782 * 14 12 10 17 17 H 1.48501 * 109.47020 * 265.00179 * 16 14 12 18 18 H 1.48496 * 109.47092 * 24.99989 * 16 14 12 19 19 H 1.48500 * 109.47221 * 144.99985 * 16 14 12 20 20 C 1.53090 * 109.16756 * 303.02135 * 6 5 4 21 21 O 1.42901 * 109.49095 * 120.02945 * 2 1 3 22 22 H 1.09001 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46964 * 300.01902 * 1 2 3 24 24 H 1.08997 * 109.47229 * 60.01635 * 1 2 3 25 25 H 1.08993 * 109.52256 * 62.48567 * 4 2 1 26 26 H 1.09000 * 109.57000 * 302.33091 * 4 2 1 27 27 H 1.09000 * 109.54176 * 297.11243 * 5 4 2 28 28 H 1.08997 * 109.61760 * 176.88951 * 5 4 2 29 29 H 1.08999 * 109.47240 * 275.43357 * 9 8 6 30 30 H 1.09006 * 109.47460 * 35.43061 * 9 8 6 31 31 H 1.09004 * 109.47096 * 155.43449 * 9 8 6 32 32 H 0.96998 * 119.99736 * 179.97438 * 15 14 12 33 33 H 1.09000 * 109.48836 * 177.58838 * 20 6 5 34 34 H 1.09003 * 109.48266 * 297.62716 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7220 -1.2497 5 6 3.5712 -0.7703 -1.2125 6 6 4.0180 -1.4595 0.0805 7 1 5.1062 -1.4501 0.1411 8 7 3.5393 -2.8441 0.0878 9 6 2.5957 -3.2875 1.1170 10 6 3.9670 -3.7100 -0.8522 11 8 4.7505 -3.3415 -1.7074 12 6 3.4893 -5.0936 -0.8446 13 1 2.7328 -5.3997 -0.1372 14 6 4.0131 -6.0203 -1.7546 15 7 4.9988 -5.6781 -2.5413 16 14 3.3026 -7.7456 -1.8439 17 1 4.1094 -8.6577 -0.9941 18 1 1.8993 -7.7287 -1.3585 19 1 3.3342 -8.2218 -3.2502 20 6 3.4311 -0.7090 1.2788 21 8 2.0068 -0.6742 1.1663 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8898 24 1 -0.3633 0.5136 -0.8901 25 1 1.7146 -0.1841 -2.1398 26 1 1.6445 -1.7372 -1.2722 27 1 3.9688 0.2442 -1.2410 28 1 3.9406 -1.3311 -2.0710 29 1 3.1448 -3.5756 2.0135 30 1 1.9104 -2.4743 1.3564 31 1 2.0299 -4.1426 0.7470 32 1 5.3617 -6.3201 -3.1713 33 1 3.7104 -1.2200 2.2002 34 1 3.8193 0.3094 1.2956 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401424079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:24 Heat of formation + Delta-G solvation = -79.809450 kcal Electronic energy + Delta-G solvation = -16943.661898 eV Core-core repulsion = 14262.798800 eV Total energy + Delta-G solvation = -2680.863099 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.67489 -37.00452 -33.91591 -33.00360 -32.35964 -31.17911 -27.47208 -25.95756 -25.58296 -23.29544 -21.83954 -20.55818 -18.40389 -16.35211 -16.03726 -15.74814 -15.42113 -14.62690 -14.50481 -14.10643 -13.58125 -13.03825 -12.65548 -12.18472 -12.17725 -12.16387 -11.61592 -11.51359 -11.33547 -11.08486 -10.99070 -10.91310 -10.53482 -10.26414 -10.20137 -10.12631 -9.74589 -8.96359 -8.78519 -7.43453 -7.04622 -6.15772 -4.57761 3.15249 3.22792 3.26680 3.96003 4.13759 4.61102 4.66416 5.06753 5.21961 5.34487 5.38607 5.50367 5.68090 5.76215 5.80673 5.87036 5.88845 5.98489 6.18850 6.25593 6.38550 6.42805 6.53820 6.68534 6.80250 6.90996 7.02315 7.49304 7.51344 7.74747 8.24209 8.44876 9.07744 9.53356 10.63352 10.82911 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038421 B = 0.008252 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.599812 B = 3392.319776 C = 3549.896098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.050 0.950 4 C -0.141 4.141 5 C -0.136 4.136 6 C 0.128 3.872 7 H 0.065 0.935 8 N -0.635 5.635 9 C 0.077 3.923 10 C 0.560 3.440 11 O -0.580 6.580 12 C -0.544 4.544 13 H 0.072 0.928 14 C 0.088 3.912 15 N -0.770 5.770 16 Si 0.904 3.096 17 H -0.273 1.273 18 H -0.264 1.264 19 H -0.279 1.279 20 C 0.060 3.940 21 O -0.372 6.372 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.267 0.733 33 H 0.094 0.906 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 8.651 5.647 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.068 0.932 4 C -0.179 4.179 5 C -0.174 4.174 6 C 0.023 3.977 7 H 0.083 0.917 8 N -0.374 5.374 9 C -0.067 4.067 10 C 0.366 3.634 11 O -0.463 6.463 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.399 5.399 16 Si 0.729 3.271 17 H -0.199 1.199 18 H -0.188 1.188 19 H -0.205 1.205 20 C -0.017 4.017 21 O -0.292 6.292 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.243 8.721 5.169 11.906 hybrid contribution -0.071 -0.836 -0.192 0.861 sum -6.314 7.885 4.977 11.261 Atomic orbital electron populations 1.21750 0.93632 1.02918 1.01675 1.22080 0.94531 0.94453 0.86112 0.93198 1.22083 0.96964 1.02051 0.96794 1.21985 0.94983 0.99413 1.01058 1.21107 0.98005 0.84578 0.93996 0.91690 1.47871 1.49065 1.08119 1.32316 1.21904 0.93245 1.01035 0.90513 1.18184 0.80471 0.85321 0.79457 1.90552 1.38230 1.78722 1.38835 1.21035 1.24192 0.93293 1.19555 0.90993 1.25719 0.93613 0.99671 0.94099 1.70012 1.19138 1.34409 1.16362 0.86420 0.80147 0.82634 0.77939 1.19897 1.18848 1.20463 1.22742 0.81136 0.98911 0.98884 1.87842 1.20995 1.76968 1.43361 0.91697 0.92360 0.91519 0.92120 0.90415 0.93074 0.88877 0.96153 0.90106 0.91517 0.92241 0.88792 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.57 37.16 0.36 -1.36 16 2 C 0.09 1.23 3.26 -26.68 -0.09 1.14 16 3 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 4 C -0.14 -2.40 5.25 -26.59 -0.14 -2.54 16 5 C -0.14 -2.60 5.40 -26.55 -0.14 -2.74 16 6 C 0.13 2.54 2.91 -67.79 -0.20 2.35 16 7 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 8 N -0.63 -14.70 2.42 -175.43 -0.43 -15.12 16 9 C 0.08 1.53 9.22 59.85 0.55 2.08 16 10 C 0.56 16.02 7.31 -12.99 -0.09 15.93 16 11 O -0.58 -18.54 13.36 5.19 0.07 -18.47 16 12 C -0.54 -15.53 8.78 -35.63 -0.31 -15.84 16 13 H 0.07 1.91 5.84 -52.48 -0.31 1.60 16 14 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 15 N -0.77 -23.25 11.87 55.55 0.66 -22.59 16 16 Si 0.90 20.42 29.56 -169.99 -5.03 15.40 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 C 0.06 0.94 5.63 37.20 0.21 1.14 16 21 O -0.37 -5.91 7.47 -35.23 -0.26 -6.17 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.55 7.76 -51.93 -0.40 1.15 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 2.19 6.31 -51.93 -0.33 1.86 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.47 4.61 -51.93 -0.24 1.23 16 31 H 0.07 1.39 5.75 -51.93 -0.30 1.10 16 32 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 33 H 0.09 1.39 7.73 -51.93 -0.40 0.98 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -33.24 268.39 -5.81 -39.05 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.92 Total: 1.31 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 0.05 Total: 2.56 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.23 Total: -37.71 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.19 Total: -24.64 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.40 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.24 -5.81 -39.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401424079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.760 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds