Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.47713 * 2 1 4 4 C 1.53093 * 109.48161 * 239.98330 * 2 1 3 5 5 C 1.53181 * 109.16380 * 182.39521 * 4 2 1 6 6 C 1.53175 * 109.03664 * 56.97529 * 5 4 2 7 7 H 1.08997 * 109.52794 * 183.04850 * 6 5 4 8 8 N 1.46505 * 109.52191 * 62.92653 * 6 5 4 9 9 C 1.46498 * 120.00108 * 242.71286 * 8 6 5 10 10 C 1.34775 * 120.00008 * 62.71132 * 8 6 5 11 11 O 1.21694 * 119.99693 * 359.97438 * 10 8 6 12 12 C 1.46375 * 120.00203 * 179.97438 * 10 8 6 13 13 H 1.08005 * 119.99801 * 5.06838 * 12 10 8 14 14 C 1.40046 * 120.00008 * 185.06333 * 12 10 8 15 15 N 1.30674 * 120.00141 * 5.20604 * 14 12 10 16 16 Si 1.86801 * 119.99905 * 185.20782 * 14 12 10 17 17 H 1.48501 * 109.47020 * 265.00179 * 16 14 12 18 18 H 1.48496 * 109.47092 * 24.99989 * 16 14 12 19 19 H 1.48500 * 109.47221 * 144.99985 * 16 14 12 20 20 C 1.53090 * 109.16756 * 303.02135 * 6 5 4 21 21 O 1.42901 * 109.49095 * 120.02945 * 2 1 3 22 22 H 1.09001 * 109.46951 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46964 * 300.01902 * 1 2 3 24 24 H 1.08997 * 109.47229 * 60.01635 * 1 2 3 25 25 H 1.08993 * 109.52256 * 62.48567 * 4 2 1 26 26 H 1.09000 * 109.57000 * 302.33091 * 4 2 1 27 27 H 1.09000 * 109.54176 * 297.11243 * 5 4 2 28 28 H 1.08997 * 109.61760 * 176.88951 * 5 4 2 29 29 H 1.08999 * 109.47240 * 275.43357 * 9 8 6 30 30 H 1.09006 * 109.47460 * 35.43061 * 9 8 6 31 31 H 1.09004 * 109.47096 * 155.43449 * 9 8 6 32 32 H 0.96998 * 119.99736 * 179.97438 * 15 14 12 33 33 H 1.09000 * 109.48836 * 177.58838 * 20 6 5 34 34 H 1.09003 * 109.48266 * 297.62716 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7220 -1.2497 5 6 3.5712 -0.7703 -1.2125 6 6 4.0180 -1.4595 0.0805 7 1 5.1062 -1.4501 0.1411 8 7 3.5393 -2.8441 0.0878 9 6 2.5957 -3.2875 1.1170 10 6 3.9670 -3.7100 -0.8522 11 8 4.7505 -3.3415 -1.7074 12 6 3.4893 -5.0936 -0.8446 13 1 2.7328 -5.3997 -0.1372 14 6 4.0131 -6.0203 -1.7546 15 7 4.9988 -5.6781 -2.5413 16 14 3.3026 -7.7456 -1.8439 17 1 4.1094 -8.6577 -0.9941 18 1 1.8993 -7.7287 -1.3585 19 1 3.3342 -8.2218 -3.2502 20 6 3.4311 -0.7090 1.2788 21 8 2.0068 -0.6742 1.1663 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5141 0.8898 24 1 -0.3633 0.5136 -0.8901 25 1 1.7146 -0.1841 -2.1398 26 1 1.6445 -1.7372 -1.2722 27 1 3.9688 0.2442 -1.2410 28 1 3.9406 -1.3311 -2.0710 29 1 3.1448 -3.5756 2.0135 30 1 1.9104 -2.4743 1.3564 31 1 2.0299 -4.1426 0.7470 32 1 5.3617 -6.3201 -3.1713 33 1 3.7104 -1.2200 2.2002 34 1 3.8193 0.3094 1.2956 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401424079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -102.812528 kcal Electronic energy + Delta-G solvation = -16944.659387 eV Core-core repulsion = 14262.798800 eV Total energy + Delta-G solvation = -2681.860587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14589 -38.87775 -35.74806 -34.61565 -34.24960 -32.67712 -28.91660 -27.90792 -27.25625 -24.71316 -23.28388 -22.16632 -20.13551 -18.32111 -17.64801 -17.30795 -17.07503 -16.21959 -16.01603 -15.74525 -15.28274 -14.52527 -14.30211 -13.81307 -13.73016 -13.35870 -13.14942 -13.11421 -12.94153 -12.80159 -12.75082 -12.37625 -12.06818 -12.02042 -11.94138 -11.71617 -11.14868 -10.91907 -10.36459 -9.57786 -8.96475 -8.28360 -6.80915 1.36993 1.38584 1.54074 2.23024 2.48162 2.72798 2.98564 3.62309 3.86505 3.89432 4.00473 4.05325 4.35250 4.46661 4.50952 4.55519 4.68018 4.74337 4.86470 4.93148 4.98477 5.01224 5.12267 5.23974 5.32084 5.37317 5.40289 5.47065 5.80225 6.18091 6.27294 6.53154 6.89591 7.48800 8.51334 8.70074 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038421 B = 0.008252 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.599812 B = 3392.319776 C = 3549.896098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.077 0.923 4 C -0.135 4.135 5 C -0.134 4.134 6 C 0.117 3.883 7 H 0.043 0.957 8 N -0.634 5.634 9 C 0.080 3.920 10 C 0.543 3.457 11 O -0.628 6.628 12 C -0.573 4.573 13 H 0.087 0.913 14 C 0.030 3.970 15 N -0.824 5.824 16 Si 0.992 3.008 17 H -0.261 1.261 18 H -0.250 1.250 19 H -0.273 1.273 20 C 0.071 3.929 21 O -0.379 6.379 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.105 0.895 31 H 0.053 0.947 32 H 0.273 0.727 33 H 0.105 0.895 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 9.307 7.212 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 H 0.095 0.905 4 C -0.173 4.173 5 C -0.172 4.172 6 C 0.013 3.987 7 H 0.061 0.939 8 N -0.371 5.371 9 C -0.063 4.063 10 C 0.348 3.652 11 O -0.515 6.515 12 C -0.610 4.610 13 H 0.105 0.895 14 C -0.185 4.185 15 N -0.453 5.453 16 Si 0.812 3.188 17 H -0.186 1.186 18 H -0.173 1.173 19 H -0.198 1.198 20 C -0.005 4.005 21 O -0.298 6.298 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.104 0.896 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.103 9.408 6.786 14.150 hybrid contribution 0.523 -0.946 -0.680 1.277 sum -7.580 8.462 6.106 12.897 Atomic orbital electron populations 1.21756 0.91703 1.02594 1.03521 1.22234 0.96004 0.94934 0.83817 0.90479 1.22046 0.95017 1.00660 0.99604 1.21892 0.96792 1.00057 0.98486 1.21385 0.97186 0.83410 0.96763 0.93881 1.47732 1.48727 1.09107 1.31523 1.22013 0.93016 1.01472 0.89771 1.18534 0.80246 0.86471 0.79943 1.90508 1.40270 1.79782 1.40933 1.21544 1.24916 0.93977 1.20545 0.89495 1.26946 0.93528 1.05005 0.93013 1.70177 1.21012 1.36688 1.17470 0.85094 0.79770 0.75649 0.78336 1.18560 1.17348 1.19791 1.22714 0.80982 1.00107 0.96723 1.87810 1.20864 1.77416 1.43746 0.93134 0.90574 0.89643 0.90408 0.94185 0.89912 0.94371 0.94794 0.87718 0.92865 0.91747 0.87679 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.57 71.98 0.69 -2.19 16 2 C 0.09 2.23 3.26 30.63 0.10 2.33 16 3 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 4 C -0.14 -4.49 5.25 30.69 0.16 -4.33 16 5 C -0.13 -5.17 5.40 30.71 0.17 -5.00 16 6 C 0.12 4.65 2.91 45.08 0.13 4.78 16 7 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 8 N -0.63 -29.95 2.42 -827.17 -2.01 -31.95 16 9 C 0.08 3.13 9.22 127.77 1.18 4.31 16 10 C 0.54 32.41 7.31 86.36 0.63 33.04 16 11 O -0.63 -42.56 13.36 -4.33 -0.06 -42.62 16 12 C -0.57 -33.59 8.78 24.83 0.22 -33.38 16 13 H 0.09 4.65 5.84 -2.91 -0.02 4.64 16 14 C 0.03 1.71 5.49 85.30 0.47 2.17 16 15 N -0.82 -51.62 11.87 21.84 0.26 -51.36 16 16 Si 0.99 42.28 29.56 68.60 2.03 44.30 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 C 0.07 2.02 5.63 72.01 0.41 2.43 16 21 O -0.38 -10.79 7.47 -148.98 -1.11 -11.90 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.04 1.61 7.76 -2.39 -0.02 1.60 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.04 1.89 6.31 -2.39 -0.02 1.88 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 3.62 4.61 -2.46 -0.01 3.61 16 31 H 0.05 2.21 5.75 -2.38 -0.01 2.20 16 32 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 33 H 0.11 2.77 7.73 -2.39 -0.02 2.76 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.57 268.39 4.34 -72.23 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.08 Total: 17.13 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 4.15 Total: 4.16 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -1.75 Total: -83.31 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.17 Total: -54.52 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -76.57 4.34 -72.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401424079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.582 kcal (2) G-P(sol) polarization free energy of solvation -76.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds