Wall clock time and date at job start Mon Mar 30 2020 03:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 13 13 O 1.21282 * 119.99544 * 119.99884 * 12 2 1 14 14 N 1.34774 * 120.00011 * 300.00244 * 12 2 1 15 15 C 1.47424 * 125.64602 * 0.02562 * 14 12 2 16 16 C 1.54916 * 104.83101 * 204.08964 * 15 14 12 17 17 H 1.08998 * 110.99862 * 81.06745 * 16 15 14 18 18 O 1.42897 * 111.00537 * 204.88041 * 16 15 14 19 19 C 1.55157 * 101.58004 * 322.99394 * 16 15 14 20 20 C 1.47022 * 125.64770 * 179.71711 * 14 12 2 21 21 H 1.08993 * 109.88311 * 59.55544 * 20 14 12 22 22 C 1.53009 * 109.87731 * 298.39081 * 20 14 12 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.08991 * 110.37069 * 322.93244 * 15 14 12 28 28 H 1.09002 * 110.36724 * 85.25968 * 15 14 12 29 29 H 0.96699 * 114.00387 * 298.54948 * 18 16 15 30 30 H 1.09002 * 110.72024 * 153.86308 * 19 16 15 31 31 H 1.09003 * 110.72106 * 277.13569 * 19 16 15 32 32 H 1.09005 * 109.46955 * 60.00454 * 22 20 14 33 33 H 1.09005 * 109.46593 * 179.97438 * 22 20 14 34 34 H 1.08988 * 109.47555 * 299.99890 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 6 2.0323 -0.7104 1.2306 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8705 0.9317 2.7336 16 6 1.2941 1.3917 4.1509 17 1 2.2092 1.9826 4.1126 18 8 0.2433 2.1207 4.7883 19 6 1.5386 0.0330 4.8592 20 6 2.1214 -0.8465 3.7328 21 1 3.2091 -0.8594 3.8002 22 6 1.5731 -2.2706 3.8444 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.0687 1.7175 2.0047 28 1 -0.1852 0.6605 2.7227 29 1 -0.0110 2.9304 4.3249 30 1 2.2548 0.1458 5.6732 31 1 0.6009 -0.3858 5.2244 32 1 1.9601 -2.8742 3.0234 33 1 1.8847 -2.7064 4.7937 34 1 0.4846 -2.2458 3.7955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597553399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:29 Heat of formation + Delta-G solvation = -113.050823 kcal Electronic energy + Delta-G solvation = -16527.761683 eV Core-core repulsion = 13845.457130 eV Total energy + Delta-G solvation = -2682.304553 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25623 -38.94077 -36.61589 -35.86636 -33.43398 -31.60162 -30.89925 -27.36146 -26.81432 -24.99530 -22.87515 -21.94575 -19.95966 -18.51652 -18.21045 -17.67132 -17.17062 -16.29363 -16.04019 -15.30293 -15.11694 -14.82130 -14.49657 -14.12757 -13.96275 -13.46872 -13.33032 -13.01064 -12.92856 -12.75916 -12.56003 -12.36115 -12.25372 -12.05512 -11.96090 -11.64468 -11.14317 -10.96458 -10.60929 -10.26491 -9.58587 -8.17458 -6.28202 1.39342 1.41036 1.49551 1.87228 2.07457 2.43689 3.11778 3.20862 3.51408 3.66253 4.03499 4.14038 4.24009 4.34277 4.41464 4.66947 4.70768 4.73116 4.76300 4.90869 4.94435 4.96784 5.04104 5.15865 5.29215 5.43731 5.57993 5.70360 5.93215 6.18696 6.61176 6.80494 6.86617 7.37035 7.46871 8.88319 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040079 B = 0.007591 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.457637 B = 3687.859415 C = 4177.828729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.032 3.968 3 H 0.038 0.962 4 C -0.533 4.533 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.534 3.466 13 O -0.583 6.583 14 N -0.621 5.621 15 C 0.068 3.932 16 C 0.102 3.898 17 H 0.086 0.914 18 O -0.563 6.563 19 C -0.108 4.108 20 C 0.124 3.876 21 H 0.067 0.933 22 C -0.155 4.155 23 H 0.016 0.984 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.266 0.734 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.400 0.600 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.091 0.909 34 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 3.718 14.231 14.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.011 3.989 3 H 0.056 0.944 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.781 3.219 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.326 3.674 13 O -0.462 6.462 14 N -0.357 5.357 15 C -0.055 4.055 16 C 0.042 3.958 17 H 0.104 0.896 18 O -0.371 6.371 19 C -0.145 4.145 20 C 0.021 3.979 21 H 0.085 0.915 22 C -0.213 4.213 23 H 0.035 0.965 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.251 0.749 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.732 2.812 14.385 14.759 hybrid contribution 0.317 -0.123 -1.646 1.680 sum -1.414 2.689 12.739 13.097 Atomic orbital electron populations 1.21666 0.95199 0.99173 1.01983 1.18726 0.95257 0.95644 0.89280 0.94384 1.21270 1.31828 1.12861 0.91200 0.93449 1.25591 0.95114 0.95747 1.01371 1.69929 1.37010 1.23507 1.24453 0.85652 0.78701 0.78715 0.78814 1.20261 1.19673 1.20131 1.21351 0.78189 0.83642 0.84267 1.90493 1.40232 1.28656 1.86822 1.48608 1.52207 1.29991 1.04887 1.23243 0.95593 0.87940 0.98758 1.22849 0.90596 0.93155 0.89233 0.89590 1.86450 1.55488 1.41930 1.53237 1.22684 1.03043 0.92460 0.96362 1.21725 0.99121 0.94167 0.82864 0.91454 1.22066 1.00934 0.95872 1.02461 0.96470 0.90967 0.92556 0.92486 0.90249 0.90441 0.74925 0.87236 0.89161 0.94714 0.89014 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.78 71.98 0.63 -5.10 16 2 C 0.03 1.65 1.99 -12.29 -0.02 1.63 16 3 H 0.04 2.03 7.85 -2.39 -0.02 2.02 16 4 C -0.53 -31.58 8.37 25.60 0.21 -31.36 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.19 5.30 84.66 0.45 1.64 16 7 N -0.91 -51.32 11.32 21.45 0.24 -51.08 16 8 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 9 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 C 0.53 25.63 7.00 87.66 0.61 26.24 16 13 O -0.58 -32.11 14.48 -3.04 -0.04 -32.15 16 14 N -0.62 -22.45 3.06 -788.02 -2.41 -24.86 16 15 C 0.07 1.89 4.86 86.86 0.42 2.31 16 16 C 0.10 2.11 4.43 31.99 0.14 2.25 16 17 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 18 O -0.56 -10.26 13.47 -148.98 -2.01 -12.27 16 19 C -0.11 -2.22 6.22 31.79 0.20 -2.03 16 20 C 0.12 3.61 3.46 45.35 0.16 3.77 16 21 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 22 C -0.16 -4.53 9.13 71.99 0.66 -3.87 16 23 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 25 H 0.06 2.15 4.99 -2.38 -0.01 2.14 16 26 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 27 H 0.08 2.26 7.36 -2.39 -0.02 2.24 16 28 H 0.08 2.12 7.07 -2.39 -0.02 2.11 16 29 H 0.40 4.10 9.11 -74.06 -0.67 3.43 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 1.81 7.83 -2.39 -0.02 1.79 16 32 H 0.03 1.28 6.85 -2.38 -0.02 1.26 16 33 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 Total: -1.00 -70.61 273.78 1.69 -68.92 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.42 Total: 8.57 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 3.46 Total: -4.52 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -2.17 Total: -75.94 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -2.05 Total: -44.42 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.61 1.69 -68.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597553399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.130 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds