Wall clock time and date at job start Mon Mar 30 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46584 * 2 1 4 4 C 1.50698 * 109.47022 * 240.00679 * 2 1 3 5 5 H 1.08005 * 119.99289 * 240.00023 * 4 2 1 6 6 C 1.37873 * 120.00870 * 59.99734 * 4 2 1 7 7 N 1.31520 * 119.99248 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00499 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99804 * 8 6 4 10 10 H 1.48500 * 109.47277 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47024 * 299.99525 * 8 6 4 12 12 C 1.50694 * 109.47484 * 119.99923 * 2 1 3 13 13 O 1.21283 * 120.00060 * 105.81222 * 12 2 1 14 14 N 1.34775 * 120.00228 * 285.82506 * 12 2 1 15 15 C 1.47431 * 125.64624 * 353.60520 * 14 12 2 16 16 C 1.54905 * 104.83018 * 155.84321 * 15 14 12 17 17 H 1.08996 * 111.00575 * 155.08435 * 16 15 14 18 18 O 1.42905 * 111.00155 * 278.89788 * 16 15 14 19 19 C 1.55156 * 101.58507 * 37.00799 * 16 15 14 20 20 C 1.47023 * 125.65259 * 173.57078 * 14 12 2 21 21 H 1.09001 * 109.88136 * 300.51108 * 20 14 12 22 22 C 1.53008 * 109.87779 * 61.51647 * 20 14 12 23 23 H 1.09003 * 109.47265 * 293.87167 * 1 2 3 24 24 H 1.08996 * 109.47475 * 53.87374 * 1 2 3 25 25 H 1.09004 * 109.46958 * 173.87145 * 1 2 3 26 26 H 0.97005 * 119.99418 * 180.02562 * 7 6 4 27 27 H 1.08996 * 110.36337 * 37.00068 * 15 14 12 28 28 H 1.09002 * 110.46042 * 274.72690 * 15 14 12 29 29 H 0.96702 * 114.00237 * 295.41337 * 18 16 15 30 30 H 1.09003 * 110.71839 * 82.86212 * 19 16 15 31 31 H 1.08997 * 110.72248 * 206.13261 * 19 16 15 32 32 H 1.08995 * 109.47139 * 60.00512 * 22 20 14 33 33 H 1.09003 * 109.46878 * 180.02562 * 22 20 14 34 34 H 1.08992 * 109.47023 * 299.99810 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0082 12 6 2.0324 -0.7103 1.2304 13 8 2.5044 -1.8237 1.1376 14 7 1.9570 -0.1086 2.4340 15 6 1.5331 1.2830 2.6738 16 6 1.0259 1.2963 4.1374 17 1 1.0984 2.2954 4.5669 18 8 -0.3124 0.8020 4.2202 19 6 2.0223 0.3233 4.8214 20 6 2.2831 -0.7313 3.7253 21 1 1.6467 -1.6010 3.8887 22 6 3.7540 -1.1524 3.7432 23 1 -0.3634 0.4159 0.9398 24 1 -0.3634 0.6058 -0.8300 25 1 -0.3633 -1.0218 -0.1097 26 1 0.7080 1.1610 -3.4844 27 1 0.7291 1.5576 1.9911 28 1 2.3768 1.9635 2.5585 29 1 -0.9638 1.3521 3.7640 30 1 2.9448 0.8397 5.0870 31 1 1.5703 -0.1371 5.6998 32 1 4.3847 -0.2755 3.5973 33 1 3.9883 -1.6133 4.7027 34 1 3.9365 -1.8687 2.9422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597553402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:34 Heat of formation + Delta-G solvation = -90.118408 kcal Electronic energy + Delta-G solvation = -16624.412337 eV Core-core repulsion = 13943.102209 eV Total energy + Delta-G solvation = -2681.310129 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.74948 -37.43913 -35.16620 -33.74847 -31.65798 -29.93118 -29.75471 -25.68400 -25.12539 -23.33713 -21.52538 -20.42394 -18.36015 -17.47285 -16.27554 -15.83335 -15.30491 -14.77246 -14.22102 -14.07405 -13.58393 -13.43424 -12.97101 -12.61788 -12.35289 -12.00740 -11.74073 -11.29586 -11.26005 -11.09495 -10.93861 -10.69736 -10.57229 -10.55131 -10.23046 -10.02381 -9.93637 -8.95811 -8.52299 -8.28342 -7.96254 -6.01908 -4.04144 3.37256 3.39344 3.44786 3.69538 3.75606 4.15417 4.47872 4.63362 4.72789 5.02421 5.31832 5.35041 5.54235 5.61022 5.74817 5.82182 5.89038 5.98268 6.01894 6.08490 6.41312 6.58331 6.68911 6.87775 6.97339 7.06590 7.50874 7.66059 7.77280 8.02451 8.17377 8.46223 9.03142 9.28958 9.60828 11.06235 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039589 B = 0.007935 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.089113 B = 3527.929516 C = 3999.903460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.035 3.965 3 H 0.045 0.955 4 C -0.501 4.501 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.537 3.463 13 O -0.543 6.543 14 N -0.623 5.623 15 C 0.072 3.928 16 C 0.088 3.912 17 H 0.074 0.926 18 O -0.557 6.557 19 C -0.120 4.120 20 C 0.136 3.864 21 H 0.068 0.932 22 C -0.162 4.162 23 H 0.013 0.987 24 H 0.089 0.911 25 H 0.033 0.967 26 H 0.261 0.739 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.380 0.620 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 4.429 13.103 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.014 3.986 3 H 0.063 0.937 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.330 3.670 13 O -0.418 6.418 14 N -0.360 5.360 15 C -0.052 4.052 16 C 0.028 3.972 17 H 0.092 0.908 18 O -0.363 6.363 19 C -0.158 4.158 20 C 0.032 3.968 21 H 0.087 0.913 22 C -0.221 4.221 23 H 0.032 0.968 24 H 0.108 0.892 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.228 0.772 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.235 3.404 13.142 13.578 hybrid contribution 0.033 0.148 -1.147 1.157 sum 0.268 3.552 11.995 12.512 Atomic orbital electron populations 1.21704 0.96262 1.00947 0.99545 1.18822 0.94170 0.96518 0.89086 0.93709 1.21098 1.31128 1.12620 0.89079 0.91040 1.24938 0.95121 0.95063 0.99056 1.69880 1.37115 1.23116 1.23584 0.86506 0.79214 0.79795 0.81629 1.20165 1.21353 1.20244 1.21742 0.76086 0.86141 0.83065 1.90511 1.45006 1.20870 1.85450 1.48753 1.68866 1.12526 1.05833 1.22990 1.00339 0.85085 0.96817 1.22955 0.83022 0.96626 0.94610 0.90779 1.86494 1.16573 1.54993 1.78202 1.22769 0.98113 0.96791 0.98125 1.21384 0.96063 0.95780 0.83590 0.91342 1.22166 0.95579 1.02118 1.02200 0.96828 0.89250 0.94734 0.92955 0.89498 0.91266 0.77220 0.89463 0.89735 0.92886 0.92613 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.66 37.16 0.32 -2.70 16 2 C 0.04 0.90 1.89 -92.93 -0.18 0.72 16 3 H 0.05 1.17 7.77 -51.93 -0.40 0.76 16 4 C -0.50 -14.51 8.36 -34.44 -0.29 -14.80 16 5 H 0.07 2.18 6.85 -52.48 -0.36 1.83 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.37 11.39 55.43 0.63 -24.74 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.54 12.93 6.87 -10.99 -0.08 12.86 16 13 O -0.54 -14.73 14.38 5.56 0.08 -14.65 16 14 N -0.62 -11.82 3.07 -163.01 -0.50 -12.32 16 15 C 0.07 1.07 6.15 -2.53 -0.02 1.05 16 16 C 0.09 1.03 4.43 -24.58 -0.11 0.92 16 17 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 18 O -0.56 -7.11 13.47 -35.23 -0.47 -7.59 16 19 C -0.12 -1.43 6.22 -24.90 -0.15 -1.59 16 20 C 0.14 2.19 3.49 -66.95 -0.23 1.96 16 21 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 22 C -0.16 -2.51 9.13 37.16 0.34 -2.17 16 23 H 0.01 0.26 6.40 -51.93 -0.33 -0.07 16 24 H 0.09 2.28 6.26 -51.93 -0.33 1.95 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 1.34 5.84 -51.93 -0.30 1.03 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.38 3.43 9.12 45.56 0.42 3.85 16 30 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 LS Contribution 275.68 15.07 4.15 4.15 Total: -1.00 -32.97 275.68 -5.77 -38.74 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.15 Total: 1.47 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.49 Total: -2.18 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.13 Total: -37.06 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.39 Total: -22.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.97 -5.77 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597553402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.375 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds