Wall clock time and date at job start Mon Mar 30 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46584 * 2 1 4 4 C 1.50698 * 109.47022 * 240.00679 * 2 1 3 5 5 H 1.08005 * 119.99289 * 240.00023 * 4 2 1 6 6 C 1.37873 * 120.00870 * 59.99734 * 4 2 1 7 7 N 1.31520 * 119.99248 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00499 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99804 * 8 6 4 10 10 H 1.48500 * 109.47277 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47024 * 299.99525 * 8 6 4 12 12 C 1.50694 * 109.47484 * 119.99923 * 2 1 3 13 13 O 1.21283 * 120.00060 * 105.81222 * 12 2 1 14 14 N 1.34775 * 120.00228 * 285.82506 * 12 2 1 15 15 C 1.47431 * 125.64624 * 353.60520 * 14 12 2 16 16 C 1.54905 * 104.83018 * 155.84321 * 15 14 12 17 17 H 1.08996 * 111.00575 * 155.08435 * 16 15 14 18 18 O 1.42905 * 111.00155 * 278.89788 * 16 15 14 19 19 C 1.55156 * 101.58507 * 37.00799 * 16 15 14 20 20 C 1.47023 * 125.65259 * 173.57078 * 14 12 2 21 21 H 1.09001 * 109.88136 * 300.51108 * 20 14 12 22 22 C 1.53008 * 109.87779 * 61.51647 * 20 14 12 23 23 H 1.09003 * 109.47265 * 293.87167 * 1 2 3 24 24 H 1.08996 * 109.47475 * 53.87374 * 1 2 3 25 25 H 1.09004 * 109.46958 * 173.87145 * 1 2 3 26 26 H 0.97005 * 119.99418 * 180.02562 * 7 6 4 27 27 H 1.08996 * 110.36337 * 37.00068 * 15 14 12 28 28 H 1.09002 * 110.46042 * 274.72690 * 15 14 12 29 29 H 0.96702 * 114.00237 * 295.41337 * 18 16 15 30 30 H 1.09003 * 110.71839 * 82.86212 * 19 16 15 31 31 H 1.08997 * 110.72248 * 206.13261 * 19 16 15 32 32 H 1.08995 * 109.47139 * 60.00512 * 22 20 14 33 33 H 1.09003 * 109.46878 * 180.02562 * 22 20 14 34 34 H 1.08992 * 109.47023 * 299.99810 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0079 10 1 1.8269 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0082 12 6 2.0324 -0.7103 1.2304 13 8 2.5044 -1.8237 1.1376 14 7 1.9570 -0.1086 2.4340 15 6 1.5331 1.2830 2.6738 16 6 1.0259 1.2963 4.1374 17 1 1.0984 2.2954 4.5669 18 8 -0.3124 0.8020 4.2202 19 6 2.0223 0.3233 4.8214 20 6 2.2831 -0.7313 3.7253 21 1 1.6467 -1.6010 3.8887 22 6 3.7540 -1.1524 3.7432 23 1 -0.3634 0.4159 0.9398 24 1 -0.3634 0.6058 -0.8300 25 1 -0.3633 -1.0218 -0.1097 26 1 0.7080 1.1610 -3.4844 27 1 0.7291 1.5576 1.9911 28 1 2.3768 1.9635 2.5585 29 1 -0.9638 1.3521 3.7640 30 1 2.9448 0.8397 5.0870 31 1 1.5703 -0.1371 5.6998 32 1 4.3847 -0.2755 3.5973 33 1 3.9883 -1.6133 4.7027 34 1 3.9365 -1.8687 2.9422 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597553402.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:34 Heat of formation + Delta-G solvation = -115.129562 kcal Electronic energy + Delta-G solvation = -16625.496902 eV Core-core repulsion = 13943.102209 eV Total energy + Delta-G solvation = -2682.394694 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.20439 -38.93408 -36.36626 -35.80420 -33.34455 -31.64798 -30.98633 -27.28769 -26.85150 -25.06241 -22.90662 -21.72912 -19.91191 -18.62293 -18.20051 -17.64432 -16.87007 -16.43847 -15.71182 -15.35074 -15.01390 -14.91850 -14.65788 -14.26815 -13.72770 -13.41960 -13.11465 -12.97905 -12.95198 -12.68015 -12.59437 -12.36010 -12.23936 -12.10181 -12.01041 -11.63598 -11.08994 -11.01355 -10.60492 -10.22858 -9.48465 -8.18131 -6.27993 1.38559 1.40544 1.49039 1.90822 2.18779 2.44934 3.11523 3.28411 3.53487 3.70724 4.02874 4.19526 4.27885 4.41595 4.55732 4.68353 4.71003 4.75507 4.80205 4.93304 4.93603 4.97843 5.05240 5.18210 5.32195 5.42733 5.63518 5.69883 5.91773 6.18039 6.67362 6.80883 6.91437 7.37453 7.50555 8.88238 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039589 B = 0.007935 C = 0.006998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.089113 B = 3527.929516 C = 3999.903460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.034 3.966 3 H 0.038 0.962 4 C -0.533 4.533 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.275 1.275 12 C 0.531 3.469 13 O -0.588 6.588 14 N -0.620 5.620 15 C 0.058 3.942 16 C 0.098 3.902 17 H 0.120 0.880 18 O -0.577 6.577 19 C -0.109 4.109 20 C 0.124 3.876 21 H 0.046 0.954 22 C -0.156 4.156 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.266 0.734 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.395 0.605 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 6.021 14.661 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.013 3.987 3 H 0.056 0.944 4 C -0.571 4.571 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.200 1.200 12 C 0.323 3.677 13 O -0.468 6.468 14 N -0.354 5.354 15 C -0.064 4.064 16 C 0.039 3.961 17 H 0.138 0.862 18 O -0.386 6.386 19 C -0.146 4.146 20 C 0.021 3.979 21 H 0.064 0.936 22 C -0.214 4.214 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.246 0.754 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.109 5.053 14.739 15.582 hybrid contribution 0.047 -0.313 -1.585 1.616 sum 0.156 4.741 13.154 13.983 Atomic orbital electron populations 1.21494 0.95148 0.99497 1.00704 1.18717 0.95025 0.95714 0.89256 0.94404 1.21234 1.32010 1.12606 0.91296 0.93805 1.25585 0.95128 0.95740 1.01325 1.69943 1.36968 1.23443 1.24463 0.85653 0.78733 0.78653 0.78850 1.20461 1.19529 1.20038 1.21372 0.76251 0.85626 0.84475 1.90480 1.47183 1.22681 1.86502 1.48672 1.67083 1.14303 1.05342 1.23393 1.00953 0.82735 0.99353 1.23066 0.82422 0.98663 0.91947 0.86250 1.86467 1.17362 1.56278 1.78444 1.22809 0.99711 0.95531 0.96559 1.21667 0.95961 0.96683 0.83579 0.93614 1.22095 0.95387 1.01597 1.02335 0.93354 0.90833 0.96725 0.92466 0.90268 0.89563 0.75446 0.86501 0.88303 0.91920 0.89335 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.33 8.66 71.98 0.62 -4.71 16 2 C 0.03 1.79 1.89 -12.29 -0.02 1.76 16 3 H 0.04 2.01 7.77 -2.39 -0.02 1.99 16 4 C -0.53 -31.97 8.36 25.60 0.21 -31.75 16 5 H 0.04 2.82 6.85 -2.91 -0.02 2.80 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -51.49 11.39 21.45 0.24 -51.24 16 8 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 12 C 0.53 26.31 6.87 87.66 0.60 26.92 16 13 O -0.59 -33.59 14.38 -3.04 -0.04 -33.63 16 14 N -0.62 -23.19 3.07 -788.05 -2.42 -25.61 16 15 C 0.06 1.59 6.15 86.85 0.53 2.13 16 16 C 0.10 1.91 4.43 31.98 0.14 2.05 16 17 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 18 O -0.58 -12.84 13.47 -148.98 -2.01 -14.84 16 19 C -0.11 -2.15 6.22 31.78 0.20 -1.95 16 20 C 0.12 3.86 3.49 45.34 0.16 4.02 16 21 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 22 C -0.16 -4.68 9.13 71.98 0.66 -4.02 16 23 H 0.05 1.93 6.40 -2.39 -0.02 1.91 16 24 H 0.07 3.77 6.26 -2.39 -0.01 3.76 16 25 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 27 H 0.08 2.28 5.84 -2.39 -0.01 2.27 16 28 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.40 5.89 9.12 -74.06 -0.68 5.21 16 30 H 0.12 1.68 7.85 -2.39 -0.02 1.66 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.72 8.13 -2.39 -0.02 1.71 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.03 1.21 6.64 -2.39 -0.02 1.19 16 Total: -1.00 -74.21 275.68 1.78 -72.43 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.42 Total: 9.01 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 3.55 Total: -3.88 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.17 Total: -76.85 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -2.05 Total: -48.47 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.21 1.78 -72.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597553402.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.702 kcal (2) G-P(sol) polarization free energy of solvation -74.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds