Wall clock time and date at job start Mon Mar 30 2020 03:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47275 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00059 * 2 1 3 5 5 H 1.08001 * 120.00385 * 119.99950 * 4 2 1 6 6 C 1.37875 * 119.99799 * 299.99383 * 4 2 1 7 7 N 1.31514 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46780 * 60.00476 * 8 6 4 10 10 H 1.48498 * 109.47148 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47190 * 300.00872 * 8 6 4 12 12 C 1.50699 * 109.47230 * 239.99611 * 2 1 3 13 13 O 1.21284 * 120.00542 * 240.00208 * 12 2 1 14 14 N 1.34781 * 119.99719 * 60.00359 * 12 2 1 15 15 C 1.46504 * 119.99747 * 179.97438 * 14 12 2 16 16 H 1.09002 * 110.45739 * 325.69912 * 15 14 12 17 17 C 1.54477 * 110.50983 * 88.30647 * 15 14 12 18 18 O 1.44426 * 104.80680 * 142.76043 * 17 15 14 19 19 C 1.44428 * 105.27224 * 319.48784 * 18 17 15 20 20 H 1.09002 * 110.37347 * 281.56856 * 19 18 17 21 21 C 1.52993 * 110.37423 * 159.34137 * 19 18 17 22 22 C 1.54510 * 110.51116 * 203.09170 * 15 14 12 23 23 H 1.08998 * 109.47520 * 300.00575 * 1 2 3 24 24 H 1.09006 * 109.46769 * 60.00267 * 1 2 3 25 25 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99826 * 179.97438 * 7 6 4 27 27 H 0.96993 * 120.00041 * 359.97438 * 14 12 2 28 28 H 1.09005 * 110.37022 * 261.58680 * 17 15 14 29 29 H 1.09001 * 110.37716 * 23.92542 * 17 15 14 30 30 H 1.09004 * 109.47195 * 61.45379 * 21 19 18 31 31 H 1.09004 * 109.47652 * 181.45146 * 21 19 18 32 32 H 1.09000 * 109.47372 * 301.45053 * 21 19 18 33 33 H 1.09000 * 110.51039 * 359.86869 * 22 15 14 34 34 H 1.08999 * 110.50726 * 122.57227 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8259 -0.4203 5.2204 11 1 1.8257 -2.5201 4.0078 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1956 -0.9404 -3.6507 16 1 3.1903 -1.3498 -3.4745 17 6 1.2158 -2.0593 -4.0682 18 8 1.2228 -2.0362 -5.5122 19 6 1.2388 -0.6371 -5.8703 20 1 0.2416 -0.2084 -5.7705 21 6 1.7534 -0.4590 -7.3000 22 6 2.2118 0.0197 -4.8612 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1610 3.4843 27 1 1.1488 0.5384 -2.5436 28 1 1.5647 -3.0251 -3.7025 29 1 0.2154 -1.8484 -3.6902 30 1 1.0871 -0.9733 -7.9927 31 1 1.7838 0.6025 -7.5458 32 1 2.7559 -0.8794 -7.3804 33 1 1.8539 1.0073 -4.5703 34 1 3.2146 0.0849 -5.2834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597813467.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:30 Heat of formation + Delta-G solvation = -95.881904 kcal Electronic energy + Delta-G solvation = -16038.260529 eV Core-core repulsion = 13356.700477 eV Total energy + Delta-G solvation = -2681.560053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87259 -38.28162 -34.12566 -33.73951 -32.13874 -30.80384 -29.09479 -25.96978 -25.14348 -23.03243 -21.63275 -20.77885 -19.51921 -16.73215 -16.24641 -16.05646 -15.50033 -15.22892 -14.73091 -14.32850 -13.99555 -13.28423 -13.01985 -12.66942 -12.45589 -12.23635 -11.98504 -11.67573 -11.38488 -11.15839 -11.01217 -10.78145 -10.72370 -10.64434 -10.27255 -9.96440 -9.81020 -8.99776 -8.64124 -8.51714 -8.32918 -6.03667 -4.06924 3.36326 3.38708 3.43945 3.65097 3.66795 4.09447 4.47465 4.55978 4.64482 4.95073 5.15005 5.18840 5.29717 5.34795 5.51296 5.54734 5.72675 5.86892 5.94951 5.99342 6.00666 6.30588 6.59665 6.72924 6.80571 6.90933 7.10069 7.45732 7.74368 7.97452 8.12604 8.41900 9.01757 9.19794 9.58722 11.03906 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.062983 B = 0.005611 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.455347 B = 4989.088595 C = 5148.077420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.502 4.502 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.520 3.480 13 O -0.544 6.544 14 N -0.739 5.739 15 C 0.113 3.887 16 H 0.097 0.903 17 C 0.035 3.965 18 O -0.374 6.374 19 C 0.068 3.932 20 H 0.068 0.932 21 C -0.146 4.146 22 C -0.157 4.157 23 H 0.093 0.907 24 H 0.011 0.989 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.397 0.603 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 1.358 -14.972 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.419 6.419 14 N -0.394 5.394 15 C 0.007 3.993 16 H 0.115 0.885 17 C -0.043 4.043 18 O -0.293 6.293 19 C 0.011 3.989 20 H 0.086 0.914 21 C -0.203 4.203 22 C -0.196 4.196 23 H 0.112 0.888 24 H 0.030 0.970 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.231 0.769 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.644 0.555 -14.876 14.900 hybrid contribution -0.030 0.166 0.946 0.961 sum -0.675 0.722 -13.930 13.965 Atomic orbital electron populations 1.21744 0.96515 0.99828 1.00926 1.18874 0.94151 0.96844 0.89302 0.92981 1.21104 1.31065 1.12837 0.89006 0.90837 1.24949 0.95098 0.95060 0.99117 1.69861 1.37049 1.23103 1.23649 0.86502 0.79280 0.79723 0.81602 1.20190 1.21376 1.20193 1.22059 0.78223 0.84259 0.84497 1.90534 1.37850 1.26843 1.86712 1.46391 1.55331 1.32476 1.05212 1.22142 0.99309 0.92489 0.85351 0.88461 1.23913 0.99337 1.00695 0.80319 1.89131 1.95435 1.23715 1.20972 1.23019 0.98124 0.82700 0.95100 0.91359 1.21800 1.01987 1.01923 0.94583 1.23331 1.01189 0.99535 0.95515 0.88815 0.96963 0.94988 0.92908 0.76898 0.88534 0.91781 0.91941 0.91214 0.91769 0.89817 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.87 37.15 0.33 -2.66 16 2 C 0.03 0.72 2.64 -92.93 -0.25 0.48 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.50 -14.19 8.37 -34.44 -0.29 -14.48 16 5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.07 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.52 11.65 7.15 -10.98 -0.08 11.57 16 13 O -0.54 -14.02 15.14 5.55 0.08 -13.94 16 14 N -0.74 -12.51 4.99 -52.28 -0.26 -12.77 16 15 C 0.11 1.70 3.44 -66.36 -0.23 1.47 16 16 H 0.10 1.63 7.61 -51.93 -0.40 1.24 16 17 C 0.04 0.53 7.35 37.93 0.28 0.81 16 18 O -0.37 -5.31 11.35 -35.23 -0.40 -5.71 16 19 C 0.07 0.76 3.93 -25.79 -0.10 0.66 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.15 -1.28 9.53 37.15 0.35 -0.93 16 22 C -0.16 -1.76 6.42 -24.99 -0.16 -1.93 16 23 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 24 H 0.01 0.22 7.56 -51.93 -0.39 -0.18 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.40 5.75 7.76 -40.82 -0.32 5.43 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 34 H 0.08 0.86 7.87 -51.93 -0.41 0.46 16 LS Contribution 281.30 15.07 4.24 4.24 Total: -1.00 -30.92 281.30 -6.06 -36.98 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.09 Total: 2.35 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.23 Total: -3.49 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.37 Total: -37.22 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.32 Total: -19.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.92 -6.06 -36.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597813467.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.904 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds