Wall clock time and date at job start Mon Mar 30 2020 03:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47275 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00059 * 2 1 3 5 5 H 1.08001 * 120.00385 * 119.99950 * 4 2 1 6 6 C 1.37875 * 119.99799 * 299.99383 * 4 2 1 7 7 N 1.31514 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46780 * 60.00476 * 8 6 4 10 10 H 1.48498 * 109.47148 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47190 * 300.00872 * 8 6 4 12 12 C 1.50699 * 109.47230 * 239.99611 * 2 1 3 13 13 O 1.21284 * 120.00542 * 240.00208 * 12 2 1 14 14 N 1.34781 * 119.99719 * 60.00359 * 12 2 1 15 15 C 1.46504 * 119.99747 * 179.97438 * 14 12 2 16 16 H 1.09002 * 110.45739 * 325.69912 * 15 14 12 17 17 C 1.54477 * 110.50983 * 88.30647 * 15 14 12 18 18 O 1.44426 * 104.80680 * 142.76043 * 17 15 14 19 19 C 1.44428 * 105.27224 * 319.48784 * 18 17 15 20 20 H 1.09002 * 110.37347 * 281.56856 * 19 18 17 21 21 C 1.52993 * 110.37423 * 159.34137 * 19 18 17 22 22 C 1.54510 * 110.51116 * 203.09170 * 15 14 12 23 23 H 1.08998 * 109.47520 * 300.00575 * 1 2 3 24 24 H 1.09006 * 109.46769 * 60.00267 * 1 2 3 25 25 H 1.09002 * 109.47275 * 180.02562 * 1 2 3 26 26 H 0.97003 * 119.99826 * 179.97438 * 7 6 4 27 27 H 0.96993 * 120.00041 * 359.97438 * 14 12 2 28 28 H 1.09005 * 110.37022 * 261.58680 * 17 15 14 29 29 H 1.09001 * 110.37716 * 23.92542 * 17 15 14 30 30 H 1.09004 * 109.47195 * 61.45379 * 21 19 18 31 31 H 1.09004 * 109.47652 * 181.45146 * 21 19 18 32 32 H 1.09000 * 109.47372 * 301.45053 * 21 19 18 33 33 H 1.09000 * 110.51039 * 359.86869 * 22 15 14 34 34 H 1.08999 * 110.50726 * 122.57227 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3212 -1.1202 4.0080 9 1 3.8063 -1.1208 4.0082 10 1 1.8259 -0.4203 5.2204 11 1 1.8257 -2.5201 4.0078 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1956 -0.9404 -3.6507 16 1 3.1903 -1.3498 -3.4745 17 6 1.2158 -2.0593 -4.0682 18 8 1.2228 -2.0362 -5.5122 19 6 1.2388 -0.6371 -5.8703 20 1 0.2416 -0.2084 -5.7705 21 6 1.7534 -0.4590 -7.3000 22 6 2.2118 0.0197 -4.8612 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 0.7082 1.1610 3.4843 27 1 1.1488 0.5384 -2.5436 28 1 1.5647 -3.0251 -3.7025 29 1 0.2154 -1.8484 -3.6902 30 1 1.0871 -0.9733 -7.9927 31 1 1.7838 0.6025 -7.5458 32 1 2.7559 -0.8794 -7.3804 33 1 1.8539 1.0073 -4.5703 34 1 3.2146 0.0849 -5.2834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597813467.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:30 Heat of formation + Delta-G solvation = -117.604147 kcal Electronic energy + Delta-G solvation = -16039.202477 eV Core-core repulsion = 13356.700477 eV Total energy + Delta-G solvation = -2682.502000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17685 -39.80281 -35.80081 -35.56647 -33.07539 -32.64251 -30.47224 -27.19398 -26.92612 -24.76555 -22.77858 -21.89043 -21.22116 -18.41007 -17.93703 -17.59807 -16.68963 -16.59563 -16.17292 -15.88792 -15.69088 -14.73949 -14.54181 -14.15080 -13.66093 -13.37209 -13.12407 -13.02622 -12.94803 -12.69368 -12.59877 -12.54914 -12.20454 -12.06245 -12.00420 -11.73716 -11.04703 -10.84800 -10.60799 -10.32202 -9.99744 -8.15001 -6.25227 1.41674 1.42814 1.51422 1.88963 2.26303 2.48022 3.00219 3.14739 3.50931 3.72281 3.93902 4.13600 4.20067 4.34873 4.46982 4.62750 4.70537 4.75495 4.82805 4.90367 4.95806 4.97869 5.04142 5.11534 5.30581 5.50000 5.50552 5.74698 5.87764 5.95037 6.21790 6.72138 6.85554 7.39760 7.52588 8.90479 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.062983 B = 0.005611 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.455347 B = 4989.088595 C = 5148.077420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.585 6.585 14 N -0.715 5.715 15 C 0.108 3.892 16 H 0.075 0.925 17 C 0.040 3.960 18 O -0.388 6.388 19 C 0.062 3.938 20 H 0.082 0.918 21 C -0.143 4.143 22 C -0.146 4.146 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.022 0.978 26 H 0.265 0.735 27 H 0.412 0.588 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 2.421 -16.217 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 H 0.061 0.939 4 C -0.569 4.569 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.465 6.465 14 N -0.370 5.370 15 C 0.003 3.997 16 H 0.094 0.906 17 C -0.038 4.038 18 O -0.307 6.307 19 C 0.005 3.995 20 H 0.100 0.900 21 C -0.200 4.200 22 C -0.184 4.184 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.250 0.750 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.200 1.659 -16.166 16.295 hybrid contribution 0.126 -0.135 1.261 1.274 sum -1.074 1.524 -14.905 15.021 Atomic orbital electron populations 1.21559 0.94947 0.99416 1.01830 1.18815 0.95395 0.96011 0.89498 0.93861 1.21265 1.31682 1.12766 0.91197 0.93413 1.25572 0.95190 0.95738 1.01355 1.69935 1.37103 1.23531 1.24364 0.85676 0.78660 0.78731 0.78948 1.20222 1.19910 1.20264 1.21611 0.77944 0.83626 0.85638 1.90516 1.39838 1.28628 1.87481 1.46055 1.54285 1.32398 1.04246 1.22265 0.98132 0.93693 0.85653 0.90634 1.23732 0.99146 0.99806 0.81149 1.89131 1.95511 1.26039 1.20029 1.23308 0.98935 0.80974 0.96284 0.90025 1.21825 1.01639 1.03582 0.92946 1.23328 1.02288 0.99398 0.93403 0.91108 0.92753 0.95928 0.92590 0.75037 0.90172 0.91559 0.91746 0.88777 0.92126 0.87685 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.87 71.98 0.64 -4.68 16 2 C 0.02 1.19 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.20 8.14 -2.39 -0.02 2.19 16 4 C -0.53 -30.62 8.37 25.60 0.21 -30.41 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -50.69 11.32 21.45 0.24 -50.45 16 8 Si 0.95 44.86 29.54 68.60 2.03 46.88 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 C 0.52 23.49 7.15 87.66 0.63 24.12 16 13 O -0.59 -30.97 15.14 -3.04 -0.05 -31.02 16 14 N -0.72 -23.22 4.99 -437.71 -2.19 -25.41 16 15 C 0.11 3.11 3.44 46.01 0.16 3.27 16 16 H 0.08 2.55 7.61 -2.39 -0.02 2.53 16 17 C 0.04 1.16 7.35 72.48 0.53 1.69 16 18 O -0.39 -10.43 11.35 -148.98 -1.69 -12.12 16 19 C 0.06 1.19 3.93 31.20 0.12 1.32 16 20 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 21 C -0.14 -2.06 9.53 71.98 0.69 -1.37 16 22 C -0.15 -2.84 6.42 31.72 0.20 -2.64 16 23 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 24 H 0.05 1.90 7.56 -2.38 -0.02 1.88 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.41 10.80 7.76 -92.71 -0.72 10.09 16 28 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 29 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.10 1.63 7.68 -2.39 -0.02 1.61 16 34 H 0.10 1.69 7.87 -2.39 -0.02 1.67 16 Total: -1.00 -67.31 281.30 2.31 -64.99 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.37 Total: 13.07 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 3.60 Total: -5.95 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -1.94 Total: -75.85 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.74 Total: -43.14 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.31 2.31 -64.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597813467.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.611 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds