Wall clock time and date at job start Mon Mar 30 2020 03:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.33406 * 2 1 4 4 C 1.54479 * 110.37432 * 237.63390 * 2 1 3 5 5 C 1.54509 * 104.06132 * 217.19204 * 4 2 1 6 6 H 1.09009 * 110.51282 * 118.64174 * 5 4 2 7 7 C 1.50694 * 110.51280 * 241.35079 * 5 4 2 8 8 O 1.21293 * 120.00477 * 114.63990 * 7 5 4 9 9 N 1.34785 * 120.00275 * 294.64583 * 7 5 4 10 10 C 1.46498 * 119.99346 * 359.97438 * 9 7 5 11 11 C 1.37095 * 120.00371 * 179.97438 * 9 7 5 12 12 H 1.08004 * 119.99536 * 23.01733 * 11 9 7 13 13 C 1.38943 * 120.00109 * 203.02414 * 11 9 7 14 14 N 1.31413 * 120.00059 * 11.23682 * 13 11 9 15 15 Si 1.86802 * 119.99999 * 191.23978 * 13 11 9 16 16 H 1.48502 * 109.47132 * 84.94636 * 15 13 11 17 17 H 1.48497 * 109.47080 * 204.94695 * 15 13 11 18 18 H 1.48498 * 109.47091 * 324.95168 * 15 13 11 19 19 C 1.54479 * 104.06645 * 359.97438 * 5 4 2 20 20 H 1.08997 * 110.37204 * 265.15160 * 19 5 4 21 21 C 1.52992 * 110.37459 * 142.81002 * 19 5 4 22 22 O 1.44423 * 110.36989 * 122.25242 * 2 1 3 23 23 H 1.08994 * 109.46956 * 299.20522 * 1 2 3 24 24 H 1.09001 * 109.46924 * 59.20325 * 1 2 3 25 25 H 1.08994 * 109.47256 * 179.20059 * 1 2 3 26 26 H 1.09009 * 110.50913 * 335.83313 * 4 2 1 27 27 H 1.08995 * 110.51435 * 98.40636 * 4 2 1 28 28 H 1.09008 * 109.47188 * 91.91613 * 10 9 7 29 29 H 1.09000 * 109.46686 * 211.91103 * 10 9 7 30 30 H 1.08994 * 109.47466 * 331.90943 * 10 9 7 31 31 H 0.97004 * 119.99724 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47113 * 303.16321 * 21 19 5 33 33 H 1.08998 * 109.47484 * 63.16719 * 21 19 5 34 34 H 1.09005 * 109.47139 * 183.16736 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7752 -1.2232 5 6 3.3178 -1.5063 -0.6843 6 1 3.1955 -2.5861 -0.7705 7 6 4.5526 -1.0532 -1.4196 8 8 5.4221 -0.4475 -0.8293 9 7 4.6909 -1.3206 -2.7334 10 6 3.6410 -2.0525 -3.4463 11 6 5.8141 -0.9079 -3.4025 12 1 6.7265 -0.7145 -2.8579 13 6 5.7785 -0.7383 -4.7811 14 7 4.6280 -0.7561 -5.4158 15 14 7.3662 -0.4850 -5.7323 16 1 7.9676 -1.8046 -6.0519 17 1 7.0771 0.2455 -6.9924 18 1 8.3160 0.3053 -4.9086 19 6 3.3877 -1.0859 0.8005 20 1 4.0530 -0.2310 0.9219 21 6 3.8604 -2.2570 1.6641 22 8 2.0327 -0.7225 1.1450 23 1 -0.3633 0.5014 0.8970 24 1 -0.3633 0.5262 -0.8828 25 1 -0.3633 -1.0275 -0.0143 26 1 1.3276 -1.4936 -1.5757 27 1 2.3407 -0.0861 -2.0223 28 1 2.9359 -1.3442 -3.8816 29 1 4.0898 -2.6518 -4.2385 30 1 3.1162 -2.7059 -2.7494 31 1 4.6032 -0.6381 -6.3784 32 1 3.1939 -3.1072 1.5196 33 1 4.8735 -2.5362 1.3747 34 1 3.8506 -1.9619 2.7134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:21 Heat of formation + Delta-G solvation = -102.620486 kcal Electronic energy + Delta-G solvation = -16660.494670 eV Core-core repulsion = 13978.642410 eV Total energy + Delta-G solvation = -2681.852259 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41201 -39.42141 -36.72362 -34.02603 -33.64868 -32.93523 -29.88220 -28.14629 -26.72934 -25.10844 -22.86134 -22.18487 -20.51962 -18.92584 -18.10140 -17.21524 -16.72959 -16.46851 -16.16012 -15.67769 -15.48507 -14.45445 -14.38941 -13.95427 -13.78333 -13.40323 -13.25528 -13.09747 -12.94691 -12.79187 -12.70113 -12.59457 -12.31671 -12.16894 -12.07514 -11.77038 -11.60152 -11.04070 -10.74168 -10.29899 -9.71908 -8.35306 -6.01722 1.35947 1.39584 1.51116 1.96836 2.25213 2.77241 3.04649 3.06026 3.65729 3.68561 3.89294 4.02846 4.20995 4.27260 4.41190 4.46563 4.58022 4.67432 4.70614 4.85398 4.92821 5.01951 5.06590 5.07248 5.17011 5.22741 5.31442 5.37337 5.42289 5.89352 6.07369 6.45500 7.13428 7.43655 7.99199 8.66195 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.039469 B = 0.007865 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.244750 B = 3559.262760 C = 3957.809821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.053 0.947 4 C -0.131 4.131 5 C -0.122 4.122 6 H 0.115 0.885 7 C 0.445 3.555 8 O -0.633 6.633 9 N -0.457 5.457 10 C 0.124 3.876 11 C -0.348 4.348 12 H 0.070 0.930 13 C 0.000 4.000 14 N -0.894 5.894 15 Si 0.989 3.011 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.278 1.278 19 C 0.086 3.914 20 H 0.054 0.946 21 C -0.134 4.134 22 O -0.376 6.376 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.274 0.726 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 -3.359 5.357 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.008 3.992 3 H 0.071 0.929 4 C -0.169 4.169 5 C -0.144 4.144 6 H 0.133 0.867 7 C 0.234 3.766 8 O -0.521 6.521 9 N -0.175 5.175 10 C -0.019 4.019 11 C -0.476 4.476 12 H 0.088 0.912 13 C -0.202 4.202 14 N -0.532 5.532 15 Si 0.813 3.187 16 H -0.190 1.190 17 H -0.196 1.196 18 H -0.203 1.203 19 C 0.028 3.972 20 H 0.072 0.928 21 C -0.191 4.191 22 O -0.296 6.296 23 H 0.087 0.913 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.299 -3.118 5.589 10.480 hybrid contribution 1.158 0.434 -0.940 1.553 sum -7.142 -2.684 4.649 8.934 Atomic orbital electron populations 1.21770 0.90332 1.03736 1.03363 1.23090 0.97164 0.94670 0.84281 0.92890 1.22985 0.95785 0.99961 0.98204 1.22521 0.93342 1.02665 0.95876 0.86723 1.20672 0.89178 0.83428 0.83306 1.90460 1.45834 1.47465 1.68312 1.43794 1.18503 1.47753 1.07478 1.21486 0.89978 0.95160 0.95303 1.19623 0.90592 1.46467 0.90949 0.91194 1.26074 1.01454 0.95441 0.97267 1.70054 1.25336 1.47760 1.10065 0.85013 0.77596 0.78801 0.77318 1.18990 1.19616 1.20298 1.22767 0.84051 0.98344 0.92028 0.92784 1.21707 1.01194 0.96461 0.99742 1.89054 1.26963 1.74642 1.38914 0.91283 0.89695 0.90839 0.87443 0.92265 0.93075 0.93027 0.91676 0.91619 0.90317 0.91922 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.52 71.98 0.69 -2.22 16 2 C 0.07 1.96 3.92 31.10 0.12 2.09 16 3 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 4 C -0.13 -4.25 4.96 31.61 0.16 -4.10 16 5 C -0.12 -4.56 2.10 -10.53 -0.02 -4.58 16 6 H 0.11 3.74 7.02 -2.38 -0.02 3.72 16 7 C 0.44 22.13 6.81 87.65 0.60 22.73 16 8 O -0.63 -36.54 15.14 -3.07 -0.05 -36.59 16 9 N -0.46 -23.79 3.02 -658.89 -1.99 -25.78 16 10 C 0.12 5.40 7.47 127.77 0.95 6.36 16 11 C -0.35 -20.02 9.28 84.04 0.78 -19.24 16 12 H 0.07 4.31 7.42 -2.91 -0.02 4.29 16 13 C 0.00 -0.01 5.11 84.92 0.43 0.42 16 14 N -0.89 -46.94 10.64 21.66 0.23 -46.71 16 15 Si 0.99 42.55 29.57 68.60 2.03 44.58 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 C 0.09 3.09 3.28 31.09 0.10 3.19 16 20 H 0.05 2.31 6.90 -2.39 -0.02 2.29 16 21 C -0.13 -3.94 9.52 71.98 0.69 -3.25 16 22 O -0.38 -12.41 11.04 -148.98 -1.64 -14.05 16 23 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 26 H 0.11 2.82 7.86 -2.38 -0.02 2.80 16 27 H 0.06 2.23 7.29 -2.39 -0.02 2.22 16 28 H 0.05 2.30 7.31 -2.38 -0.02 2.28 16 29 H 0.05 2.39 7.08 -2.39 -0.02 2.37 16 30 H 0.06 2.28 6.13 -2.39 -0.01 2.27 16 31 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -66.62 274.97 4.15 -62.47 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.07 Total: 14.68 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 4.49 Total: 1.39 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -1.76 Total: -72.49 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.69 Total: -50.64 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -66.62 4.15 -62.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.155 kcal (2) G-P(sol) polarization free energy of solvation -66.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds