Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 O 1.45202 * 109.47030 * 119.99538 * 2 1 3 5 5 C 1.34228 * 117.00066 * 150.00062 * 4 2 1 6 6 O 1.20827 * 119.99566 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00359 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.86815 * 40.70115 * 7 5 4 9 9 C 1.54321 * 110.01017 * 279.60749 * 7 5 4 10 10 C 1.55157 * 102.94374 * 218.31211 * 9 7 5 11 11 C 1.54920 * 101.57630 * 35.50227 * 10 9 7 12 12 N 1.47018 * 109.88509 * 161.71991 * 7 5 4 13 13 C 1.36941 * 125.64889 * 298.47752 * 12 7 5 14 14 H 1.07993 * 119.99926 * 158.04843 * 13 12 7 15 15 C 1.38818 * 119.99502 * 338.05389 * 13 12 7 16 16 N 1.31621 * 119.99395 * 156.56408 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 336.56076 * 15 13 12 18 18 H 1.48497 * 109.47345 * 87.00896 * 17 15 13 19 19 H 1.48497 * 109.47091 * 207.01249 * 17 15 13 20 20 H 1.48506 * 109.47010 * 327.00607 * 17 15 13 21 21 H 1.08994 * 109.47590 * 300.00260 * 1 2 3 22 22 H 1.09004 * 109.47020 * 60.00353 * 1 2 3 23 23 H 1.09006 * 109.46990 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47590 * 239.99740 * 2 1 3 25 25 H 1.08994 * 109.47195 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46951 * 299.99807 * 3 2 1 27 27 H 1.08999 * 109.46893 * 59.99864 * 3 2 1 28 28 H 1.09001 * 110.72493 * 336.67739 * 9 7 5 29 29 H 1.09004 * 110.72265 * 99.95002 * 9 7 5 30 30 H 1.09000 * 111.00886 * 277.43187 * 10 9 7 31 31 H 1.08998 * 111.03851 * 153.58755 * 10 9 7 32 32 H 1.09001 * 110.36246 * 204.15031 * 11 10 9 33 33 H 1.08998 * 110.36408 * 81.83096 * 11 10 9 34 34 H 0.97006 * 119.99518 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1936 -1.3169 1.0853 6 8 3.8018 -1.2989 0.0414 7 6 3.7594 -2.0495 2.2745 8 1 2.9632 -2.5819 2.7948 9 6 4.4385 -1.0512 3.2356 10 6 5.6867 -1.8329 3.7236 11 6 6.0752 -2.6247 2.4500 12 7 4.7904 -2.9998 1.8322 13 6 4.5902 -4.0585 0.9870 14 1 5.4223 -4.4797 0.4427 15 6 3.3174 -4.5899 0.8298 16 7 3.0132 -5.2567 -0.2634 17 14 2.0366 -4.3589 2.1698 18 1 1.3249 -3.0730 1.9578 19 1 1.0619 -5.4781 2.1212 20 1 2.7051 -4.3420 3.4958 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 4.7335 -0.1455 2.7057 29 1 3.7812 -0.8132 4.0720 30 1 5.4305 -2.5078 4.5403 31 1 6.4846 -1.1514 4.0185 32 1 6.6428 -3.5164 2.7162 33 1 6.6522 -1.9948 1.7730 34 1 2.1240 -5.6285 -0.3731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609895408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = -59.245670 kcal Electronic energy + Delta-G solvation = -16982.505045 eV Core-core repulsion = 14302.533659 eV Total energy + Delta-G solvation = -2679.971386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88535 -37.65615 -35.64311 -32.75985 -32.57076 -30.05823 -29.01088 -27.09969 -24.60533 -22.85437 -20.98105 -20.36441 -19.62615 -17.47724 -17.00431 -15.69228 -15.47390 -15.00561 -14.54120 -13.86225 -13.50476 -13.31128 -12.95912 -12.58974 -12.26611 -12.13982 -12.05567 -11.69684 -11.42597 -11.31515 -11.15957 -10.78800 -10.64375 -10.58178 -10.49036 -10.06383 -9.89015 -9.47673 -9.33780 -8.59895 -7.14746 -6.00468 -3.30684 3.15975 3.30011 3.40875 3.43721 3.48354 4.49219 4.82505 5.06240 5.10820 5.17721 5.21260 5.35167 5.43119 5.47538 5.60031 5.66085 5.80555 5.85421 5.99808 6.01787 6.11752 6.18335 6.24241 6.27233 6.34669 6.48912 6.55847 6.76455 7.26947 7.62261 8.28007 8.69759 8.83870 9.62267 10.07210 11.15664 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.013916 C = 0.010526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.041716 B = 2011.579198 C = 2659.450951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 C -0.164 4.164 4 O -0.366 6.366 5 C 0.441 3.559 6 O -0.481 6.481 7 C 0.151 3.849 8 H 0.067 0.933 9 C -0.117 4.117 10 C -0.135 4.135 11 C 0.131 3.869 12 N -0.576 5.576 13 C -0.243 4.243 14 H 0.094 0.906 15 C 0.031 3.969 16 N -0.893 5.893 17 Si 0.852 3.148 18 H -0.268 1.268 19 H -0.296 1.296 20 H -0.270 1.270 21 H 0.062 0.938 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.664 11.431 6.091 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 C -0.221 4.221 4 O -0.284 6.284 5 C 0.280 3.720 6 O -0.364 6.364 7 C 0.041 3.959 8 H 0.084 0.916 9 C -0.155 4.155 10 C -0.173 4.173 11 C 0.006 3.994 12 N -0.300 5.300 13 C -0.370 4.370 14 H 0.111 0.889 15 C -0.169 4.169 16 N -0.535 5.535 17 Si 0.681 3.319 18 H -0.194 1.194 19 H -0.224 1.224 20 H -0.196 1.196 21 H 0.081 0.919 22 H 0.090 0.910 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.590 11.242 5.557 12.641 hybrid contribution -0.959 0.052 0.337 1.018 sum -2.549 11.294 5.894 12.992 Atomic orbital electron populations 1.21847 0.93319 1.02966 1.02242 1.22545 0.94492 0.92369 0.88850 1.22157 1.01999 0.95743 1.02208 1.86667 1.38465 1.63156 1.40103 1.25531 0.78413 0.75982 0.92095 1.90570 1.59362 1.56416 1.30053 1.21236 0.93792 0.90408 0.90418 0.91596 1.22465 0.97648 0.97372 0.98006 1.22831 0.96870 0.98876 0.98748 1.21757 0.88680 0.97437 0.91527 1.44656 1.04031 1.26724 1.54577 1.18595 0.96229 1.05364 1.16774 0.88877 1.25009 0.96891 0.98086 0.96917 1.69880 1.20778 1.39024 1.23778 0.87334 0.82407 0.77525 0.84631 1.19442 1.22382 1.19603 0.91850 0.91019 0.91842 0.90023 0.92170 0.91371 0.92002 0.91066 0.90346 0.90948 0.90944 0.92195 0.94858 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.57 37.16 0.36 -1.75 16 2 C 0.07 1.30 3.18 -26.73 -0.09 1.22 16 3 C -0.16 -2.35 9.55 37.16 0.35 -1.99 16 4 O -0.37 -7.85 9.49 -39.25 -0.37 -8.23 16 5 C 0.44 10.62 5.60 36.00 0.20 10.82 16 6 O -0.48 -12.94 15.38 -18.75 -0.29 -13.23 16 7 C 0.15 3.47 2.43 -68.11 -0.17 3.30 16 8 H 0.07 1.60 3.33 -51.93 -0.17 1.42 16 9 C -0.12 -2.01 6.47 -24.90 -0.16 -2.17 16 10 C -0.13 -2.12 7.09 -24.58 -0.17 -2.30 16 11 C 0.13 2.60 7.23 -2.53 -0.02 2.58 16 12 N -0.58 -14.46 2.57 -163.88 -0.42 -14.88 16 13 C -0.24 -7.12 9.86 -15.06 -0.15 -7.27 16 14 H 0.09 2.90 8.06 -52.49 -0.42 2.48 16 15 C 0.03 0.93 5.24 -17.43 -0.09 0.84 16 16 N -0.89 -28.27 13.97 55.49 0.78 -27.50 16 17 Si 0.85 22.36 24.02 -169.99 -4.08 18.27 16 18 H -0.27 -6.88 6.12 56.52 0.35 -6.53 16 19 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 20 H -0.27 -6.79 6.96 56.52 0.39 -6.39 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.08 1.65 7.16 -51.93 -0.37 1.28 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -34.11 276.12 -5.39 -39.50 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.22 Total: -1.37 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 0.07 Total: 3.28 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.35 Total: -42.38 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.66 Total: -21.46 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.08 Total: 18.27 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.11 -5.39 -39.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609895408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.751 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds