Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 O 1.45202 * 109.47030 * 119.99538 * 2 1 3 5 5 C 1.34228 * 117.00066 * 150.00062 * 4 2 1 6 6 O 1.20827 * 119.99566 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00359 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.86815 * 40.70115 * 7 5 4 9 9 C 1.54321 * 110.01017 * 279.60749 * 7 5 4 10 10 C 1.55157 * 102.94374 * 218.31211 * 9 7 5 11 11 C 1.54920 * 101.57630 * 35.50227 * 10 9 7 12 12 N 1.47018 * 109.88509 * 161.71991 * 7 5 4 13 13 C 1.36941 * 125.64889 * 298.47752 * 12 7 5 14 14 H 1.07993 * 119.99926 * 158.04843 * 13 12 7 15 15 C 1.38818 * 119.99502 * 338.05389 * 13 12 7 16 16 N 1.31621 * 119.99395 * 156.56408 * 15 13 12 17 17 Si 1.86798 * 120.00296 * 336.56076 * 15 13 12 18 18 H 1.48497 * 109.47345 * 87.00896 * 17 15 13 19 19 H 1.48497 * 109.47091 * 207.01249 * 17 15 13 20 20 H 1.48506 * 109.47010 * 327.00607 * 17 15 13 21 21 H 1.08994 * 109.47590 * 300.00260 * 1 2 3 22 22 H 1.09004 * 109.47020 * 60.00353 * 1 2 3 23 23 H 1.09006 * 109.46990 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47590 * 239.99740 * 2 1 3 25 25 H 1.08994 * 109.47195 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46951 * 299.99807 * 3 2 1 27 27 H 1.08999 * 109.46893 * 59.99864 * 3 2 1 28 28 H 1.09001 * 110.72493 * 336.67739 * 9 7 5 29 29 H 1.09004 * 110.72265 * 99.95002 * 9 7 5 30 30 H 1.09000 * 111.00886 * 277.43187 * 10 9 7 31 31 H 1.08998 * 111.03851 * 153.58755 * 10 9 7 32 32 H 1.09001 * 110.36246 * 204.15031 * 11 10 9 33 33 H 1.08998 * 110.36408 * 81.83096 * 11 10 9 34 34 H 0.97006 * 119.99518 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 3.1936 -1.3169 1.0853 6 8 3.8018 -1.2989 0.0414 7 6 3.7594 -2.0495 2.2745 8 1 2.9632 -2.5819 2.7948 9 6 4.4385 -1.0512 3.2356 10 6 5.6867 -1.8329 3.7236 11 6 6.0752 -2.6247 2.4500 12 7 4.7904 -2.9998 1.8322 13 6 4.5902 -4.0585 0.9870 14 1 5.4223 -4.4797 0.4427 15 6 3.3174 -4.5899 0.8298 16 7 3.0132 -5.2567 -0.2634 17 14 2.0366 -4.3589 2.1698 18 1 1.3249 -3.0730 1.9578 19 1 1.0619 -5.4781 2.1212 20 1 2.7051 -4.3420 3.4958 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 4.7335 -0.1455 2.7057 29 1 3.7812 -0.8132 4.0720 30 1 5.4305 -2.5078 4.5403 31 1 6.4846 -1.1514 4.0185 32 1 6.6428 -3.5164 2.7162 33 1 6.6522 -1.9948 1.7730 34 1 2.1240 -5.6285 -0.3731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609895408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = -82.626572 kcal Electronic energy + Delta-G solvation = -16983.518917 eV Core-core repulsion = 14302.533659 eV Total energy + Delta-G solvation = -2680.985258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.65334 -39.28739 -37.41969 -34.72914 -34.11665 -31.94102 -30.62472 -28.24188 -26.55308 -24.54899 -22.48512 -21.88194 -21.39175 -19.32290 -18.94737 -17.46044 -17.21488 -16.80243 -16.10777 -15.42283 -15.32143 -15.06631 -14.51205 -14.09274 -13.82846 -13.52038 -13.45699 -13.19684 -13.13049 -12.88933 -12.74709 -12.67697 -12.24467 -12.03171 -11.93873 -11.86274 -11.54043 -11.37542 -11.13063 -10.77400 -9.19173 -8.29267 -5.56591 1.22250 1.25599 1.36218 1.38550 1.79002 2.31375 2.89846 3.25647 3.68834 3.75126 3.80831 3.92356 3.95503 4.09236 4.13440 4.30746 4.63419 4.67382 4.74260 4.75527 4.82359 4.87430 4.99557 5.02638 5.06251 5.10625 5.17523 5.38165 5.54889 5.63184 6.01603 6.59878 6.96658 7.41009 7.95544 8.91378 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021869 B = 0.013916 C = 0.010526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.041716 B = 2011.579198 C = 2659.450951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.057 3.943 3 C -0.154 4.154 4 O -0.367 6.367 5 C 0.441 3.559 6 O -0.525 6.525 7 C 0.137 3.863 8 H 0.060 0.940 9 C -0.109 4.109 10 C -0.116 4.116 11 C 0.117 3.883 12 N -0.597 5.597 13 C -0.237 4.237 14 H 0.053 0.947 15 C -0.029 4.029 16 N -0.946 5.946 17 Si 0.916 3.084 18 H -0.262 1.262 19 H -0.300 1.300 20 H -0.246 1.246 21 H 0.084 0.916 22 H 0.104 0.896 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.029 0.971 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 14.023 8.838 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.003 3.997 3 C -0.211 4.211 4 O -0.284 6.284 5 C 0.282 3.718 6 O -0.412 6.412 7 C 0.027 3.973 8 H 0.077 0.923 9 C -0.147 4.147 10 C -0.153 4.153 11 C -0.006 4.006 12 N -0.322 5.322 13 C -0.365 4.365 14 H 0.071 0.929 15 C -0.225 4.225 16 N -0.591 5.591 17 Si 0.743 3.257 18 H -0.188 1.188 19 H -0.228 1.228 20 H -0.170 1.170 21 H 0.103 0.897 22 H 0.123 0.877 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.431 13.876 8.358 16.380 hybrid contribution -0.641 -0.684 -0.625 1.127 sum -3.072 13.192 7.732 15.597 Atomic orbital electron populations 1.21887 0.90319 1.02607 1.04949 1.23006 0.96850 0.93714 0.86180 1.22114 1.00747 0.93473 1.04799 1.86613 1.37104 1.63037 1.41691 1.25708 0.78701 0.75616 0.91792 1.90554 1.60715 1.58249 1.31643 1.21520 0.93682 0.91308 0.90751 0.92270 1.22597 0.98355 0.96087 0.97654 1.22809 0.97312 0.98888 0.96330 1.22037 0.86776 0.98281 0.93538 1.44789 1.06524 1.26481 1.54358 1.18476 0.95113 1.06476 1.16466 0.92890 1.25670 0.99282 0.98705 0.98797 1.70020 1.21456 1.41703 1.25949 0.86320 0.79622 0.77313 0.82425 1.18806 1.22817 1.17035 0.89707 0.87731 0.93739 0.93552 0.94091 0.88463 0.89690 0.90246 0.86637 0.89638 0.86644 0.91958 0.95286 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.57 71.98 0.69 -3.01 16 2 C 0.06 1.99 3.18 30.60 0.10 2.08 16 3 C -0.15 -4.04 9.55 71.98 0.69 -3.35 16 4 O -0.37 -15.29 9.49 -51.40 -0.49 -15.78 16 5 C 0.44 21.09 5.60 71.24 0.40 21.49 16 6 O -0.52 -29.05 15.38 21.96 0.34 -28.71 16 7 C 0.14 6.03 2.43 44.59 0.11 6.14 16 8 H 0.06 2.72 3.33 -2.39 -0.01 2.71 16 9 C -0.11 -3.30 6.47 31.78 0.21 -3.09 16 10 C -0.12 -3.12 7.09 31.99 0.23 -2.89 16 11 C 0.12 4.50 7.23 86.86 0.63 5.13 16 12 N -0.60 -29.93 2.57 -672.40 -1.73 -31.66 16 13 C -0.24 -14.40 9.86 84.03 0.83 -13.57 16 14 H 0.05 3.53 8.06 -2.91 -0.02 3.51 16 15 C -0.03 -1.80 5.24 84.86 0.45 -1.35 16 16 N -0.95 -62.71 13.97 21.65 0.30 -62.40 16 17 Si 0.92 46.83 24.02 68.60 1.65 48.48 16 18 H -0.26 -12.95 6.12 99.48 0.61 -12.34 16 19 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 20 H -0.25 -11.48 6.96 99.48 0.69 -10.79 16 21 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 22 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.05 1.92 7.16 -2.39 -0.02 1.90 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 2.28 7.85 -2.39 -0.02 2.26 16 29 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.26 16.45 8.31 -92.70 -0.77 15.68 16 Total: -1.00 -78.99 276.12 5.34 -73.65 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.96 Total: 8.85 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 4.32 Total: 7.58 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -1.43 Total: -94.06 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.15 Total: -44.49 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.65 Total: 48.48 kcal Total: -78.99 5.34 -73.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609895408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.980 kcal (2) G-P(sol) polarization free energy of solvation -78.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds