Wall clock time and date at job start Mon Mar 30 2020 03:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.27131 * 2 1 4 4 C 1.55205 * 110.45294 * 238.04236 * 2 1 3 5 5 C 1.55306 * 100.82313 * 204.75857 * 4 2 1 6 6 H 1.09007 * 110.84535 * 275.59204 * 5 4 2 7 7 C 1.50703 * 110.85011 * 152.17938 * 5 4 2 8 8 O 1.21273 * 119.99926 * 244.17385 * 7 5 4 9 9 N 1.34775 * 120.00072 * 64.16956 * 7 5 4 10 10 C 1.46499 * 120.00180 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.47260 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47301 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47430 * 239.99516 * 15 13 11 19 19 C 1.54383 * 102.43970 * 33.88348 * 5 4 2 20 20 H 1.08994 * 109.82896 * 98.26189 * 19 5 4 21 21 C 1.52999 * 109.83044 * 219.23117 * 19 5 4 22 22 O 1.43238 * 107.58655 * 338.74580 * 19 5 4 23 23 H 1.09002 * 109.46809 * 299.36622 * 1 2 3 24 24 H 1.09004 * 109.47047 * 59.36235 * 1 2 3 25 25 H 1.08998 * 109.47165 * 179.36253 * 1 2 3 26 26 H 1.08995 * 111.30666 * 86.82527 * 4 2 1 27 27 H 1.09001 * 111.05296 * 322.57816 * 4 2 1 28 28 H 0.97002 * 120.00040 * 359.97438 * 9 7 5 29 29 H 1.09000 * 109.47197 * 59.99093 * 10 9 7 30 30 H 1.09007 * 109.46342 * 299.99665 * 10 9 7 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46917 * 60.00201 * 21 19 5 33 33 H 1.08994 * 109.47332 * 179.97438 * 21 19 5 34 34 H 1.09002 * 109.47433 * 300.00495 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0724 -0.7697 -1.2338 5 6 3.4722 -1.2001 -0.7168 6 1 4.2014 -0.4031 -0.8625 7 6 3.9262 -2.4690 -1.3913 8 8 4.0887 -3.4781 -0.7385 9 7 4.1517 -2.4824 -2.7200 10 6 4.5925 -3.7160 -3.3758 11 6 4.7719 -3.4644 -4.8508 12 1 4.5765 -2.4838 -5.2590 13 6 5.1793 -4.4877 -5.6801 14 7 5.4168 -5.6820 -5.1831 15 14 5.3940 -4.1779 -7.5096 16 1 5.0656 -2.7620 -7.8138 17 1 6.8008 -4.4543 -7.8968 18 1 4.4860 -5.0711 -8.2730 19 6 3.2125 -1.4394 0.7861 20 1 3.0650 -2.5033 0.9710 21 6 4.3990 -0.9280 1.6056 22 8 2.0286 -0.7156 1.1413 23 1 -0.3633 0.5040 0.8956 24 1 -0.3633 0.5237 -0.8842 25 1 -0.3633 -1.0276 -0.0114 26 1 2.1581 -0.1163 -2.1020 27 1 1.4523 -1.6378 -1.4574 28 1 4.0213 -1.6754 -3.2422 29 1 3.8434 -4.4939 -3.2279 30 1 5.5405 -4.0379 -2.9446 31 1 5.7031 -6.4020 -5.7666 32 1 4.5299 0.1395 1.4283 33 1 4.2095 -1.0993 2.6652 34 1 5.3027 -1.4594 1.3072 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686484548.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:26 Heat of formation + Delta-G solvation = -104.883194 kcal Electronic energy + Delta-G solvation = -15931.133567 eV Core-core repulsion = 13249.183189 eV Total energy + Delta-G solvation = -2681.950378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.17513 -38.10818 -34.29048 -32.72660 -32.58727 -32.01274 -28.93865 -27.21763 -24.64277 -22.90120 -21.67554 -20.72370 -19.43962 -17.50700 -16.73298 -15.92597 -15.16304 -14.94443 -14.72476 -14.43987 -13.81511 -13.51713 -13.03994 -12.92026 -12.71770 -12.29238 -11.97155 -11.93373 -11.80503 -11.47949 -11.13223 -11.01983 -10.94584 -10.83563 -10.66378 -10.33952 -9.48602 -9.40839 -9.04449 -8.78020 -7.94506 -6.20127 -4.27370 3.20998 3.25066 3.28195 3.31064 3.73119 3.97668 4.32122 4.54730 4.67906 4.91746 5.11812 5.15551 5.16335 5.31256 5.48387 5.49129 5.55414 5.65167 5.68875 5.81393 5.93289 5.99805 6.13533 6.23609 6.35811 7.12335 7.26081 7.37146 7.47027 7.61940 7.92890 8.56086 8.72913 9.02461 9.39451 10.90138 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.041566 B = 0.005678 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.472188 B = 4930.309544 C = 5324.489377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 H 0.069 0.931 4 C -0.141 4.141 5 C -0.144 4.144 6 H 0.105 0.895 7 C 0.509 3.491 8 O -0.552 6.552 9 N -0.708 5.708 10 C 0.248 3.752 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.090 3.910 20 H 0.101 0.899 21 C -0.157 4.157 22 O -0.377 6.377 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.391 0.609 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 12.559 7.545 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.020 3.980 3 H 0.087 0.913 4 C -0.179 4.179 5 C -0.166 4.166 6 H 0.123 0.877 7 C 0.293 3.707 8 O -0.431 6.431 9 N -0.356 5.356 10 C 0.128 3.872 11 C -0.582 4.582 12 H 0.081 0.919 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.033 3.967 20 H 0.119 0.881 21 C -0.215 4.215 22 O -0.297 6.297 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.223 0.777 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.015 11.616 8.132 15.403 hybrid contribution 0.293 0.464 -1.564 1.657 sum -5.723 12.080 6.568 14.894 Atomic orbital electron populations 1.21883 0.93753 1.02977 1.02180 1.22949 0.94827 0.95351 0.84905 0.91318 1.23353 0.94621 1.01309 0.98588 1.22930 0.98913 0.98209 0.96507 0.87668 1.20013 0.78423 0.89049 0.83205 1.90655 1.53132 1.34981 1.64380 1.46445 1.66298 1.15950 1.06878 1.19140 0.95526 0.81018 0.91554 1.21249 1.47760 0.97187 0.91980 0.91851 1.24954 0.94857 0.94805 0.99389 1.69982 1.44911 1.01541 1.35815 0.86357 0.77914 0.78364 0.84251 1.19641 1.20761 1.20768 1.22623 0.85147 0.97744 0.91231 0.88121 1.22097 0.97686 1.01069 1.00625 1.88425 1.42356 1.65012 1.33904 0.91978 0.91257 0.91795 0.89253 0.89644 0.77680 0.95474 0.95465 0.92454 0.92624 0.91935 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.63 37.16 0.36 -1.13 16 2 C 0.08 0.90 4.07 -25.56 -0.10 0.79 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -1.74 6.04 -24.34 -0.15 -1.89 16 5 C -0.14 -2.10 2.91 -89.82 -0.26 -2.36 16 6 H 0.11 1.32 7.85 -51.93 -0.41 0.91 16 7 C 0.51 10.04 7.15 -10.98 -0.08 9.96 16 8 O -0.55 -13.15 15.44 5.56 0.09 -13.07 16 9 N -0.71 -14.66 5.53 -61.47 -0.34 -15.00 16 10 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 11 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.09 1.35 3.59 -26.01 -0.09 1.25 16 20 H 0.10 1.76 6.82 -51.93 -0.35 1.41 16 21 C -0.16 -2.03 9.44 37.16 0.35 -1.67 16 22 O -0.38 -5.45 10.70 -35.23 -0.38 -5.83 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.17 7.95 -51.93 -0.41 0.76 16 28 H 0.39 6.90 8.32 -40.82 -0.34 6.56 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -31.41 287.06 -6.29 -37.69 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.28 Total: 3.26 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.42 Total: -1.80 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.40 Total: -40.20 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.29 Total: -18.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.41 -6.29 -37.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484548.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.192 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds