Wall clock time and date at job start Mon Mar 30 2020 03:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.27131 * 2 1 4 4 C 1.55205 * 110.45294 * 238.04236 * 2 1 3 5 5 C 1.55306 * 100.82313 * 204.75857 * 4 2 1 6 6 H 1.09007 * 110.84535 * 275.59204 * 5 4 2 7 7 C 1.50703 * 110.85011 * 152.17938 * 5 4 2 8 8 O 1.21273 * 119.99926 * 244.17385 * 7 5 4 9 9 N 1.34775 * 120.00072 * 64.16956 * 7 5 4 10 10 C 1.46499 * 120.00180 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.47260 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48494 * 109.47230 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47301 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47430 * 239.99516 * 15 13 11 19 19 C 1.54383 * 102.43970 * 33.88348 * 5 4 2 20 20 H 1.08994 * 109.82896 * 98.26189 * 19 5 4 21 21 C 1.52999 * 109.83044 * 219.23117 * 19 5 4 22 22 O 1.43238 * 107.58655 * 338.74580 * 19 5 4 23 23 H 1.09002 * 109.46809 * 299.36622 * 1 2 3 24 24 H 1.09004 * 109.47047 * 59.36235 * 1 2 3 25 25 H 1.08998 * 109.47165 * 179.36253 * 1 2 3 26 26 H 1.08995 * 111.30666 * 86.82527 * 4 2 1 27 27 H 1.09001 * 111.05296 * 322.57816 * 4 2 1 28 28 H 0.97002 * 120.00040 * 359.97438 * 9 7 5 29 29 H 1.09000 * 109.47197 * 59.99093 * 10 9 7 30 30 H 1.09007 * 109.46342 * 299.99665 * 10 9 7 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46917 * 60.00201 * 21 19 5 33 33 H 1.08994 * 109.47332 * 179.97438 * 21 19 5 34 34 H 1.09002 * 109.47433 * 300.00495 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0724 -0.7697 -1.2338 5 6 3.4722 -1.2001 -0.7168 6 1 4.2014 -0.4031 -0.8625 7 6 3.9262 -2.4690 -1.3913 8 8 4.0887 -3.4781 -0.7385 9 7 4.1517 -2.4824 -2.7200 10 6 4.5925 -3.7160 -3.3758 11 6 4.7719 -3.4644 -4.8508 12 1 4.5765 -2.4838 -5.2590 13 6 5.1793 -4.4877 -5.6801 14 7 5.4168 -5.6820 -5.1831 15 14 5.3940 -4.1779 -7.5096 16 1 5.0656 -2.7620 -7.8138 17 1 6.8008 -4.4543 -7.8968 18 1 4.4860 -5.0711 -8.2730 19 6 3.2125 -1.4394 0.7861 20 1 3.0650 -2.5033 0.9710 21 6 4.3990 -0.9280 1.6056 22 8 2.0286 -0.7156 1.1413 23 1 -0.3633 0.5040 0.8956 24 1 -0.3633 0.5237 -0.8842 25 1 -0.3633 -1.0276 -0.0114 26 1 2.1581 -0.1163 -2.1020 27 1 1.4523 -1.6378 -1.4574 28 1 4.0213 -1.6754 -3.2422 29 1 3.8434 -4.4939 -3.2279 30 1 5.5405 -4.0379 -2.9446 31 1 5.7031 -6.4020 -5.7666 32 1 4.5299 0.1395 1.4283 33 1 4.2095 -1.0993 2.6652 34 1 5.3027 -1.4594 1.3072 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686484548.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:26 Heat of formation + Delta-G solvation = -127.714657 kcal Electronic energy + Delta-G solvation = -15932.123614 eV Core-core repulsion = 13249.183189 eV Total energy + Delta-G solvation = -2682.940424 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48129 -39.59396 -36.21902 -34.47805 -33.65844 -33.38844 -30.10707 -29.03574 -25.92164 -24.62302 -22.97792 -21.90360 -21.00481 -19.07397 -18.12555 -17.48645 -16.95134 -16.43583 -16.26727 -15.82210 -15.21655 -14.78912 -14.50002 -14.08820 -13.93762 -13.83880 -13.62994 -13.25795 -12.95092 -12.77554 -12.72635 -12.58204 -12.23982 -12.14843 -11.84658 -11.75053 -11.46529 -10.83586 -10.82131 -10.43676 -9.88233 -8.30478 -6.47331 1.43414 1.44336 1.57848 1.65345 2.27273 2.47587 2.76037 3.04861 3.40996 3.63613 3.77647 4.03289 4.16773 4.25998 4.40575 4.45760 4.58442 4.67398 4.79791 4.86893 4.96221 5.09328 5.09962 5.20869 5.23393 5.23971 5.33147 5.45881 5.65380 5.82600 6.09684 6.63513 6.83602 7.21596 7.42156 8.82066 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.041566 B = 0.005678 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.472188 B = 4930.309544 C = 5324.489377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.097 0.903 4 C -0.137 4.137 5 C -0.132 4.132 6 H 0.139 0.861 7 C 0.506 3.494 8 O -0.600 6.600 9 N -0.701 5.701 10 C 0.264 3.736 11 C -0.554 4.554 12 H 0.086 0.914 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.251 1.251 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.089 3.911 20 H 0.063 0.937 21 C -0.152 4.152 22 O -0.391 6.391 23 H 0.068 0.932 24 H 0.093 0.907 25 H 0.047 0.953 26 H 0.122 0.878 27 H 0.064 0.936 28 H 0.410 0.590 29 H -0.013 1.013 30 H -0.012 1.012 31 H 0.269 0.731 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 15.726 6.275 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 H 0.115 0.885 4 C -0.175 4.175 5 C -0.153 4.153 6 H 0.157 0.843 7 C 0.293 3.707 8 O -0.482 6.482 9 N -0.350 5.350 10 C 0.142 3.858 11 C -0.592 4.592 12 H 0.104 0.896 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.031 3.969 20 H 0.081 0.919 21 C -0.210 4.210 22 O -0.311 6.311 23 H 0.087 0.913 24 H 0.111 0.889 25 H 0.066 0.934 26 H 0.140 0.860 27 H 0.083 0.917 28 H 0.246 0.754 29 H 0.005 0.995 30 H 0.006 0.994 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.510 14.840 6.870 17.601 hybrid contribution 0.396 -0.548 -1.084 1.278 sum -6.115 14.292 5.786 16.587 Atomic orbital electron populations 1.21913 0.92595 1.02465 1.03714 1.23236 0.95842 0.96028 0.83248 0.88514 1.23429 0.92430 1.01317 1.00337 1.22916 1.01020 0.95667 0.95715 0.84315 1.20956 0.76801 0.90380 0.82518 1.90637 1.54765 1.37477 1.65307 1.46148 1.66393 1.14892 1.07532 1.18581 0.92485 0.82417 0.92349 1.21638 1.47410 0.98233 0.91920 0.89620 1.26075 0.94154 0.94311 1.05081 1.70144 1.46009 1.02881 1.38049 0.85097 0.77719 0.79191 0.77123 1.17463 1.20508 1.20543 1.22486 0.86330 0.96173 0.91874 0.91913 1.22048 0.96126 1.02270 1.00515 1.88418 1.42132 1.65259 1.35310 0.91296 0.88865 0.93390 0.85955 0.91676 0.75444 0.99545 0.99387 0.92246 0.90211 0.91482 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.63 71.98 0.69 -1.87 16 2 C 0.07 1.47 4.07 31.35 0.13 1.60 16 3 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.14 -3.04 6.04 32.14 0.19 -2.85 16 5 C -0.13 -3.63 2.91 -10.28 -0.03 -3.66 16 6 H 0.14 2.95 7.85 -2.38 -0.02 2.94 16 7 C 0.51 20.26 7.15 87.66 0.63 20.88 16 8 O -0.60 -30.09 15.44 -3.01 -0.05 -30.14 16 9 N -0.70 -29.08 5.53 -466.79 -2.58 -31.67 16 10 C 0.26 14.44 5.43 85.63 0.46 14.91 16 11 C -0.55 -29.72 9.28 25.60 0.24 -29.49 16 12 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 13 C 0.00 0.18 5.46 84.65 0.46 0.64 16 14 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 15 Si 0.99 41.75 29.54 68.60 2.03 43.77 16 16 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.09 2.62 3.59 31.06 0.11 2.73 16 20 H 0.06 2.31 6.82 -2.39 -0.02 2.30 16 21 C -0.15 -3.71 9.44 71.98 0.68 -3.03 16 22 O -0.39 -10.69 10.70 -148.98 -1.59 -12.28 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 28 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -71.34 287.06 1.96 -69.38 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.31 Total: 16.84 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 3.57 Total: -0.12 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -2.30 Total: -87.45 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.64 Total: -42.42 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -71.34 1.96 -69.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484548.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.337 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds