Wall clock time and date at job start Mon Mar 30 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.32853 * 2 1 4 4 C 1.54797 * 110.31292 * 237.58909 * 2 1 3 5 5 C 1.54500 * 103.91419 * 217.11928 * 4 2 1 6 6 H 1.09005 * 110.51453 * 118.81066 * 5 4 2 7 7 C 1.50700 * 110.51378 * 241.38853 * 5 4 2 8 8 O 1.21286 * 120.00120 * 116.68693 * 7 5 4 9 9 N 1.34780 * 120.00000 * 296.69454 * 7 5 4 10 10 C 1.46491 * 120.00091 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.46957 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.54485 * 104.18551 * 0.10253 * 5 4 2 20 20 H 1.09010 * 110.36767 * 265.08077 * 19 5 4 21 21 C 1.52995 * 110.37402 * 142.85317 * 19 5 4 22 22 O 1.44424 * 104.80223 * 23.90720 * 19 5 4 23 23 H 1.09001 * 109.47532 * 299.20525 * 1 2 3 24 24 H 1.08999 * 109.46952 * 59.20698 * 1 2 3 25 25 H 1.08999 * 109.46852 * 179.20545 * 1 2 3 26 26 H 1.08999 * 110.55138 * 98.53585 * 4 2 1 27 27 H 1.09003 * 110.61061 * 335.72909 * 4 2 1 28 28 H 0.97003 * 119.99349 * 359.97438 * 9 7 5 29 29 H 1.09004 * 109.47166 * 60.00164 * 10 9 7 30 30 H 1.08994 * 109.47507 * 299.99870 * 10 9 7 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47010 * 60.00089 * 21 19 5 33 33 H 1.09007 * 109.47267 * 179.97438 * 21 19 5 34 34 H 1.08997 * 109.47464 * 299.99977 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0674 -0.7781 -1.2256 5 6 3.3178 -1.5064 -0.6842 6 1 3.1980 -2.5864 -0.7702 7 6 4.5527 -1.0532 -1.4195 8 8 5.4375 -0.4779 -0.8219 9 7 4.6738 -1.2870 -2.7414 10 6 5.8739 -0.8459 -3.4563 11 6 5.7610 -1.2269 -4.9100 12 1 4.8829 -1.7453 -5.2658 13 6 6.7761 -0.9080 -5.7870 14 7 7.8452 -0.2764 -5.3538 15 14 6.6327 -1.3734 -7.5904 16 1 5.3424 -2.0714 -7.8205 17 1 6.6865 -0.1457 -8.4242 18 1 7.7552 -2.2726 -7.9604 19 6 3.3873 -1.0862 0.8008 20 1 4.0525 -0.2312 0.9225 21 6 3.8627 -2.2567 1.6638 22 8 2.0327 -0.7224 1.1451 23 1 -0.3634 0.5014 0.8970 24 1 -0.3633 0.5261 -0.8828 25 1 -0.3633 -1.0276 -0.0143 26 1 2.3423 -0.0902 -2.0251 27 1 1.3283 -1.4981 -1.5772 28 1 3.9662 -1.7473 -3.2192 29 1 6.7518 -1.3249 -3.0226 30 1 5.9709 0.2363 -3.3704 31 1 8.5594 -0.0524 -5.9708 32 1 4.8540 -2.5702 1.3366 33 1 3.9068 -1.9444 2.7073 34 1 3.1665 -3.0892 1.5625 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686484549.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:28 Heat of formation + Delta-G solvation = -104.311286 kcal Electronic energy + Delta-G solvation = -15949.257468 eV Core-core repulsion = 13267.331890 eV Total energy + Delta-G solvation = -2681.925578 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16050 -38.03822 -34.28432 -32.72596 -32.59040 -31.96755 -28.99291 -27.19188 -24.53985 -22.81344 -21.33722 -21.17214 -19.49855 -17.54488 -16.12943 -15.88853 -15.36804 -15.19183 -14.92721 -14.11292 -14.06475 -13.42263 -13.18459 -12.84195 -12.46455 -12.15153 -12.00653 -11.91825 -11.88163 -11.45004 -11.12896 -11.03407 -10.93272 -10.74971 -10.62207 -10.33199 -9.67597 -9.41655 -9.03543 -8.77770 -7.93923 -6.20106 -4.27202 3.21087 3.26644 3.28323 3.31258 3.77175 4.05944 4.33620 4.64022 4.66078 4.92726 5.13012 5.16342 5.21460 5.34396 5.48233 5.51498 5.54848 5.63810 5.74077 5.86607 5.95906 6.02591 6.07510 6.19592 6.26525 6.94942 7.26174 7.37881 7.47129 7.62386 7.93079 8.56898 8.73295 9.03287 9.39604 10.90153 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.041308 B = 0.005729 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.669530 B = 4886.395350 C = 5292.170659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.070 0.930 4 C -0.142 4.142 5 C -0.143 4.143 6 H 0.104 0.896 7 C 0.506 3.494 8 O -0.554 6.554 9 N -0.709 5.709 10 C 0.248 3.752 11 C -0.543 4.543 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.086 3.914 20 H 0.089 0.911 21 C -0.142 4.142 22 O -0.372 6.372 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.391 0.609 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.851 -2.470 8.291 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 H 0.088 0.912 4 C -0.180 4.180 5 C -0.165 4.165 6 H 0.122 0.878 7 C 0.291 3.709 8 O -0.433 6.433 9 N -0.357 5.357 10 C 0.128 3.872 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.028 3.972 20 H 0.107 0.893 21 C -0.199 4.199 22 O -0.292 6.292 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.224 0.776 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.121 -2.025 8.823 15.128 hybrid contribution -0.140 -0.415 -1.543 1.604 sum -12.261 -2.440 7.280 14.466 Atomic orbital electron populations 1.21797 0.93245 1.02758 1.02355 1.22997 0.95058 0.95687 0.84964 0.91244 1.23062 0.96136 0.99961 0.98814 1.22760 0.94593 1.02450 0.96728 0.87772 1.20165 0.87547 0.80101 0.83131 1.90652 1.42147 1.43064 1.67454 1.46465 1.23474 1.57930 1.07809 1.19132 0.81786 0.95743 0.90576 1.21257 1.04891 1.39293 0.92732 0.91848 1.24958 0.94933 0.94716 0.99411 1.69987 1.07548 1.39214 1.35511 0.86356 0.78185 0.78279 0.84064 1.19633 1.20772 1.20760 1.22872 0.84296 0.98720 0.91274 0.89315 1.21765 1.01491 0.96843 0.99803 1.89091 1.27516 1.74510 1.38089 0.91968 0.91140 0.91850 0.89749 0.89849 0.77647 0.95487 0.95505 0.92466 0.90799 0.91903 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.53 37.16 0.35 -1.04 16 2 C 0.07 0.88 3.93 -25.78 -0.10 0.78 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.14 -1.79 6.26 -25.00 -0.16 -1.95 16 5 C -0.14 -2.13 3.05 -90.21 -0.27 -2.41 16 6 H 0.10 1.36 7.87 -51.93 -0.41 0.95 16 7 C 0.51 10.01 6.96 -10.98 -0.08 9.93 16 8 O -0.55 -13.14 15.46 5.55 0.09 -13.05 16 9 N -0.71 -14.74 5.50 -61.48 -0.34 -15.08 16 10 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 11 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 15 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.09 1.29 3.26 -25.95 -0.08 1.20 16 20 H 0.09 1.52 6.93 -51.92 -0.36 1.16 16 21 C -0.14 -1.83 9.52 37.16 0.35 -1.47 16 22 O -0.37 -5.40 11.04 -35.23 -0.39 -5.78 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 26 H 0.08 1.13 7.72 -51.93 -0.40 0.73 16 27 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 28 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 286.69 15.07 4.32 4.32 Total: -1.00 -31.30 286.69 -6.29 -37.59 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.26 Total: 3.30 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.43 Total: -1.73 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.40 Total: -40.29 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.30 Total: -18.84 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.30 -6.29 -37.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484549.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.725 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds