Wall clock time and date at job start Mon Mar 30 2020 03:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.32853 * 2 1 4 4 C 1.54797 * 110.31292 * 237.58909 * 2 1 3 5 5 C 1.54500 * 103.91419 * 217.11928 * 4 2 1 6 6 H 1.09005 * 110.51453 * 118.81066 * 5 4 2 7 7 C 1.50700 * 110.51378 * 241.38853 * 5 4 2 8 8 O 1.21286 * 120.00120 * 116.68693 * 7 5 4 9 9 N 1.34780 * 120.00000 * 296.69454 * 7 5 4 10 10 C 1.46491 * 120.00091 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.46957 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.54485 * 104.18551 * 0.10253 * 5 4 2 20 20 H 1.09010 * 110.36767 * 265.08077 * 19 5 4 21 21 C 1.52995 * 110.37402 * 142.85317 * 19 5 4 22 22 O 1.44424 * 104.80223 * 23.90720 * 19 5 4 23 23 H 1.09001 * 109.47532 * 299.20525 * 1 2 3 24 24 H 1.08999 * 109.46952 * 59.20698 * 1 2 3 25 25 H 1.08999 * 109.46852 * 179.20545 * 1 2 3 26 26 H 1.08999 * 110.55138 * 98.53585 * 4 2 1 27 27 H 1.09003 * 110.61061 * 335.72909 * 4 2 1 28 28 H 0.97003 * 119.99349 * 359.97438 * 9 7 5 29 29 H 1.09004 * 109.47166 * 60.00164 * 10 9 7 30 30 H 1.08994 * 109.47507 * 299.99870 * 10 9 7 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.47010 * 60.00089 * 21 19 5 33 33 H 1.09007 * 109.47267 * 179.97438 * 21 19 5 34 34 H 1.08997 * 109.47464 * 299.99977 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0674 -0.7781 -1.2256 5 6 3.3178 -1.5064 -0.6842 6 1 3.1980 -2.5864 -0.7702 7 6 4.5527 -1.0532 -1.4195 8 8 5.4375 -0.4779 -0.8219 9 7 4.6738 -1.2870 -2.7414 10 6 5.8739 -0.8459 -3.4563 11 6 5.7610 -1.2269 -4.9100 12 1 4.8829 -1.7453 -5.2658 13 6 6.7761 -0.9080 -5.7870 14 7 7.8452 -0.2764 -5.3538 15 14 6.6327 -1.3734 -7.5904 16 1 5.3424 -2.0714 -7.8205 17 1 6.6865 -0.1457 -8.4242 18 1 7.7552 -2.2726 -7.9604 19 6 3.3873 -1.0862 0.8008 20 1 4.0525 -0.2312 0.9225 21 6 3.8627 -2.2567 1.6638 22 8 2.0327 -0.7224 1.1451 23 1 -0.3634 0.5014 0.8970 24 1 -0.3633 0.5261 -0.8828 25 1 -0.3633 -1.0276 -0.0143 26 1 2.3423 -0.0902 -2.0251 27 1 1.3283 -1.4981 -1.5772 28 1 3.9662 -1.7473 -3.2192 29 1 6.7518 -1.3249 -3.0226 30 1 5.9709 0.2363 -3.3704 31 1 8.5594 -0.0524 -5.9708 32 1 4.8540 -2.5702 1.3366 33 1 3.9068 -1.9444 2.7073 34 1 3.1665 -3.0892 1.5625 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686484549.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:28 Heat of formation + Delta-G solvation = -126.914326 kcal Electronic energy + Delta-G solvation = -15950.237610 eV Core-core repulsion = 13267.331890 eV Total energy + Delta-G solvation = -2682.905719 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49981 -39.53277 -36.21572 -34.48552 -33.69343 -33.35507 -30.15128 -29.02763 -25.84315 -24.56974 -22.66446 -22.30415 -21.08885 -19.17042 -17.93010 -17.24492 -16.73586 -16.70912 -16.45217 -15.68038 -15.60737 -14.72413 -14.52094 -14.09894 -14.04647 -13.73470 -13.44078 -13.03368 -12.93595 -12.80190 -12.77879 -12.62238 -12.25673 -12.19285 -11.82815 -11.67565 -11.46699 -10.88768 -10.83459 -10.63288 -9.88208 -8.30756 -6.47456 1.43208 1.44035 1.57611 1.65718 2.27461 2.47475 2.82140 3.04561 3.50587 3.58572 3.81805 3.96616 4.18374 4.23877 4.38278 4.42600 4.56542 4.66869 4.80842 4.89783 4.99277 5.05510 5.10115 5.14425 5.20160 5.21421 5.31293 5.45845 5.64822 5.82520 5.87156 6.63309 6.83635 7.21335 7.41779 8.81728 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.041308 B = 0.005729 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.669530 B = 4886.395350 C = 5292.170659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.062 3.938 3 H 0.057 0.943 4 C -0.136 4.136 5 C -0.132 4.132 6 H 0.134 0.866 7 C 0.505 3.495 8 O -0.599 6.599 9 N -0.702 5.702 10 C 0.265 3.735 11 C -0.555 4.555 12 H 0.085 0.915 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.084 3.916 20 H 0.057 0.943 21 C -0.138 4.138 22 O -0.376 6.376 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.409 0.591 29 H -0.012 1.012 30 H -0.012 1.012 31 H 0.269 0.731 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.423 -3.981 7.282 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.005 3.995 3 H 0.075 0.925 4 C -0.174 4.174 5 C -0.154 4.154 6 H 0.151 0.849 7 C 0.292 3.708 8 O -0.481 6.481 9 N -0.351 5.351 10 C 0.142 3.858 11 C -0.593 4.593 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.808 3.192 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.026 3.974 20 H 0.075 0.925 21 C -0.195 4.195 22 O -0.296 6.296 23 H 0.083 0.917 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.135 0.865 28 H 0.245 0.755 29 H 0.006 0.994 30 H 0.006 0.994 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.748 -3.555 7.826 17.070 hybrid contribution 0.674 0.115 -1.144 1.333 sum -14.074 -3.440 6.682 15.954 Atomic orbital electron populations 1.21790 0.90580 1.03735 1.03383 1.23200 0.97118 0.94915 0.84300 0.92458 1.23119 0.95543 1.00294 0.98474 1.22757 0.92572 1.04174 0.95876 0.84861 1.21071 0.88550 0.78648 0.82546 1.90635 1.44318 1.44868 1.68283 1.46179 1.22383 1.58233 1.08316 1.18576 0.82760 0.93008 0.91458 1.21639 1.05685 1.39233 0.92695 0.89723 1.26070 0.94305 0.94296 1.04910 1.70146 1.08680 1.40589 1.37608 0.85102 0.78926 0.77991 0.77144 1.17544 1.20490 1.20489 1.22791 0.84356 0.98415 0.91847 0.92526 1.21744 1.01384 0.96607 0.99798 1.89096 1.26795 1.74655 1.39054 0.91716 0.89403 0.90863 0.90711 0.86489 0.75519 0.99389 0.99449 0.92239 0.91722 0.91120 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.53 71.98 0.69 -1.56 16 2 C 0.06 1.44 3.93 31.21 0.12 1.57 16 3 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.14 -3.12 6.26 31.72 0.20 -2.92 16 5 C -0.13 -3.73 3.05 -10.53 -0.03 -3.76 16 6 H 0.13 3.04 7.87 -2.38 -0.02 3.02 16 7 C 0.50 20.20 6.96 87.66 0.61 20.81 16 8 O -0.60 -29.78 15.46 -3.05 -0.05 -29.83 16 9 N -0.70 -29.32 5.50 -466.80 -2.57 -31.88 16 10 C 0.26 14.46 5.43 85.64 0.46 14.92 16 11 C -0.55 -29.83 9.28 25.60 0.24 -29.59 16 12 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 15 Si 0.99 41.82 29.54 68.60 2.03 43.85 16 16 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 C 0.08 2.46 3.26 31.10 0.10 2.56 16 20 H 0.06 2.02 6.93 -2.38 -0.02 2.01 16 21 C -0.14 -3.38 9.52 71.98 0.69 -2.69 16 22 O -0.38 -10.28 11.04 -148.98 -1.64 -11.92 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 26 H 0.07 1.88 7.72 -2.39 -0.02 1.86 16 27 H 0.12 1.94 7.87 -2.39 -0.02 1.92 16 28 H 0.41 14.00 8.32 -92.71 -0.77 13.23 16 29 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 30 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 31 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.11 286.69 1.90 -68.21 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.31 Total: 17.25 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 3.54 Total: 0.01 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.28 Total: -87.57 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -1.69 Total: -41.75 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -70.11 1.90 -68.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686484549.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.705 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds