Wall clock time and date at job start Mon Mar 30 2020 03:33:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.09004 * 109.70526 * 2 1
4 4 C 1.53195 * 109.58980 * 120.35099 * 2 1 3
5 5 C 1.53036 * 109.31677 * 174.42027 * 4 2 1
6 6 C 1.53034 * 109.54109 * 298.64002 * 5 4 2
7 7 H 1.09011 * 109.49105 * 301.41247 * 6 5 4
8 8 C 1.52993 * 109.50029 * 181.31857 * 6 5 4
9 9 O 1.42907 * 109.47359 * 174.99873 * 8 6 5
10 10 C 1.53189 * 109.31320 * 61.35759 * 6 5 4
11 11 N 1.46922 * 108.78188 * 305.36936 * 10 6 5
12 12 C 1.34778 * 120.63420 * 233.63141 * 11 10 6
13 13 O 1.21681 * 119.99844 * 185.76947 * 12 11 10
14 14 C 1.46378 * 119.99888 * 5.76530 * 12 11 10
15 15 H 1.08004 * 119.99538 * 5.13863 * 14 12 11
16 16 C 1.40040 * 119.99986 * 185.13663 * 14 12 11
17 17 N 1.30674 * 119.99966 * 354.97234 * 16 14 12
18 18 Si 1.86798 * 120.00110 * 174.97607 * 16 14 12
19 19 H 1.48500 * 109.47520 * 94.99796 * 18 16 14
20 20 H 1.48501 * 109.47372 * 215.00198 * 18 16 14
21 21 H 1.48503 * 109.46905 * 334.99742 * 18 16 14
22 22 H 1.09008 * 109.47049 * 294.15982 * 1 2 3
23 23 H 1.08998 * 109.47482 * 54.15723 * 1 2 3
24 24 H 1.09006 * 109.47463 * 174.16285 * 1 2 3
25 25 H 1.09001 * 109.49753 * 54.46842 * 4 2 1
26 26 H 1.09000 * 109.52290 * 294.39208 * 4 2 1
27 27 H 1.08998 * 109.45752 * 58.65713 * 5 4 2
28 28 H 1.08999 * 109.46048 * 178.61200 * 5 4 2
29 29 H 1.09010 * 109.46810 * 294.99421 * 8 6 5
30 30 H 1.08999 * 109.47831 * 54.99305 * 8 6 5
31 31 H 0.96700 * 114.00122 * 179.97438 * 9 8 6
32 32 H 1.09001 * 109.58762 * 185.57877 * 10 6 5
33 33 H 1.09007 * 109.58258 * 65.16049 * 10 6 5
34 34 H 0.96997 * 119.99761 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0436 -0.7293 1.2455
5 6 3.5675 -0.8479 1.1702
6 6 3.9569 -1.6656 -0.0633
7 1 3.4982 -2.6528 -0.0050
8 6 5.4788 -1.8115 -0.1197
9 8 5.8351 -2.6712 -1.2043
10 6 3.4650 -0.9470 -1.3236
11 7 2.0225 -0.6996 -1.1944
12 6 1.1673 -1.1071 -2.1531
13 8 -0.0097 -0.8052 -2.0868
14 6 1.6542 -1.9126 -3.2741
15 1 2.6800 -2.2504 -3.2908
16 6 0.7902 -2.2453 -4.3247
17 7 -0.4740 -1.9214 -4.2584
18 14 1.4448 -3.1520 -5.8209
19 1 1.2266 -4.6110 -5.6503
20 1 0.7304 -2.6834 -7.0356
21 1 2.8979 -2.8825 -5.9664
22 1 -0.3633 0.4206 0.9377
23 1 -0.3634 0.6017 -0.8330
24 1 -0.3634 -1.0224 -0.1045
25 1 1.6030 -1.7252 1.2915
26 1 1.7660 -0.1672 2.1371
27 1 4.0061 0.1474 1.0993
28 1 3.9377 -1.3447 2.0670
29 1 5.9325 -0.8316 -0.2687
30 1 5.8378 -2.2395 0.8162
31 1 6.7874 -2.8090 -1.3005
32 1 3.6517 -1.5718 -2.1970
33 1 3.9903 0.0020 -1.4316
34 1 -1.0726 -2.1521 -4.9860
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000688725143.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:14
Heat of formation + Delta-G solvation = -83.908458 kcal
Electronic energy + Delta-G solvation = -16728.792096 eV
Core-core repulsion = 14047.751251 eV
Total energy + Delta-G solvation = -2681.040845 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.07324 -36.93351 -35.41545 -32.84029 -31.86344 -31.68648 -27.74038 -26.01218
-24.64528 -23.10384 -21.30727 -19.93888 -18.63560 -17.12449 -16.41201 -15.46476
-15.22673 -14.33022 -14.24330 -13.84744 -13.73276 -13.34359 -12.79788 -12.52085
-12.15166 -11.60295 -11.49878 -11.14297 -11.13940 -10.91976 -10.64410 -10.55694
-10.37189 -10.29552 -10.14579 -10.01165 -9.81044 -9.59995 -8.76944 -7.10451
-7.04629 -6.06985 -4.55668 3.18277 3.25684 3.30312 4.15085 4.37041
4.57248 4.65268 5.11704 5.24173 5.32936 5.41822 5.54687 5.76238
5.83630 5.91156 5.98596 6.01215 6.14102 6.27241 6.35915 6.45340
6.56683 6.61194 6.74661 6.80520 7.17349 7.48514 7.55000 7.73998
7.80252 8.27554 8.46330 9.10716 9.53322 10.64943 10.84592
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.023004 B = 0.011062 C = 0.007703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.868019 B = 2530.510378 C = 3633.928994
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.150 3.850
3 H 0.043 0.957
4 C -0.128 4.128
5 C -0.107 4.107
6 C -0.106 4.106
7 H 0.080 0.920
8 C 0.085 3.915
9 O -0.566 6.566
10 C 0.133 3.867
11 N -0.640 5.640
12 C 0.559 3.441
13 O -0.569 6.569
14 C -0.544 4.544
15 H 0.074 0.926
16 C 0.089 3.911
17 N -0.769 5.769
18 Si 0.903 3.097
19 H -0.273 1.273
20 H -0.280 1.280
21 H -0.264 1.264
22 H 0.014 0.986
23 H 0.078 0.922
24 H 0.065 0.935
25 H 0.063 0.937
26 H 0.061 0.939
27 H 0.058 0.942
28 H 0.055 0.945
29 H 0.043 0.957
30 H 0.040 0.960
31 H 0.372 0.628
32 H 0.100 0.900
33 H 0.036 0.964
34 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.728 0.879 7.816 13.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.046 3.954
3 H 0.061 0.939
4 C -0.167 4.167
5 C -0.144 4.144
6 C -0.126 4.126
7 H 0.098 0.902
8 C 0.007 3.993
9 O -0.370 6.370
10 C 0.008 3.992
11 N -0.378 5.378
12 C 0.365 3.635
13 O -0.452 6.452
14 C -0.580 4.580
15 H 0.092 0.908
16 C -0.131 4.131
17 N -0.398 5.398
18 Si 0.728 3.272
19 H -0.199 1.199
20 H -0.205 1.205
21 H -0.188 1.188
22 H 0.033 0.967
23 H 0.097 0.903
24 H 0.084 0.916
25 H 0.082 0.918
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.074 0.926
29 H 0.061 0.939
30 H 0.058 0.942
31 H 0.218 0.782
32 H 0.118 0.882
33 H 0.055 0.945
34 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 9.205 1.042 7.674 12.030
hybrid contribution 1.167 -0.454 -0.514 1.354
sum 10.372 0.587 7.160 12.617
Atomic orbital electron populations
1.22090 0.93205 1.04000 0.98666 1.20853 0.95546 0.93763 0.85287
0.93895 1.21998 0.94904 1.01515 0.98290 1.21438 0.96727 0.99585
0.96690 1.21598 0.93096 1.00959 0.96960 0.90193 1.22190 0.95970
0.92613 0.88546 1.86606 1.28056 1.69800 1.52581 1.21383 0.82321
0.98015 0.97438 1.48244 1.06108 1.62303 1.21124 1.18167 0.84610
0.79640 0.81064 1.90605 1.17027 1.60533 1.77029 1.21075 0.98108
1.34102 1.04760 0.90848 1.25701 0.94232 0.94306 0.98814 1.70027
1.03543 1.36021 1.30190 0.86425 0.79894 0.79869 0.81022 1.19887
1.20518 1.18768 0.96690 0.90280 0.91639 0.91803 0.92031 0.92278
0.92616 0.93924 0.94215 0.78185 0.88193 0.94529 0.92273
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.69 7.61 37.15 0.28 -2.41 16
2 C 0.15 3.05 3.49 -67.60 -0.24 2.81 16
3 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16
4 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16
5 C -0.11 -1.53 5.17 -26.69 -0.14 -1.66 16
6 C -0.11 -1.74 2.58 -90.51 -0.23 -1.98 16
7 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16
8 C 0.09 1.11 6.43 37.15 0.24 1.35 16
9 O -0.57 -7.95 13.31 -35.23 -0.47 -8.42 16
10 C 0.13 2.66 5.47 -3.71 -0.02 2.64 16
11 N -0.64 -15.03 2.97 -166.87 -0.50 -15.53 16
12 C 0.56 16.06 7.43 -12.98 -0.10 15.96 16
13 O -0.57 -17.86 10.60 5.21 0.06 -17.80 16
14 C -0.54 -15.64 8.85 -35.63 -0.32 -15.95 16
15 H 0.07 1.99 5.69 -52.48 -0.30 1.69 16
16 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16
17 N -0.77 -23.16 11.85 55.55 0.66 -22.50 16
18 Si 0.90 20.64 29.56 -169.99 -5.03 15.62 16
19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
21 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16
22 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16
23 H 0.08 1.97 6.56 -51.93 -0.34 1.63 16
24 H 0.06 1.63 6.93 -51.93 -0.36 1.27 16
25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16
28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16
30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.37 3.20 9.12 45.56 0.42 3.62 16
32 H 0.10 2.21 5.16 -51.93 -0.27 1.95 16
33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16
LS Contribution 270.67 15.07 4.08 4.08
Total: -1.00 -33.95 270.67 -6.17 -40.11
By element:
Atomic # 1 Polarization: 7.74 SS G_CDS: -4.21 Total: 3.53 kcal
Atomic # 6 Polarization: 1.67 SS G_CDS: -0.76 Total: 0.91 kcal
Atomic # 7 Polarization: -38.19 SS G_CDS: 0.16 Total: -38.03 kcal
Atomic # 8 Polarization: -25.81 SS G_CDS: -0.41 Total: -26.22 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -33.95 -6.17 -40.11 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688725143.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.794 kcal
(2) G-P(sol) polarization free energy of solvation -33.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds