Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.70526 * 2 1 4 4 C 1.53195 * 109.58980 * 120.35099 * 2 1 3 5 5 C 1.53036 * 109.31677 * 174.42027 * 4 2 1 6 6 C 1.53034 * 109.54109 * 298.64002 * 5 4 2 7 7 H 1.09011 * 109.49105 * 301.41247 * 6 5 4 8 8 C 1.52993 * 109.50029 * 181.31857 * 6 5 4 9 9 O 1.42907 * 109.47359 * 174.99873 * 8 6 5 10 10 C 1.53189 * 109.31320 * 61.35759 * 6 5 4 11 11 N 1.46922 * 108.78188 * 305.36936 * 10 6 5 12 12 C 1.34778 * 120.63420 * 233.63141 * 11 10 6 13 13 O 1.21681 * 119.99844 * 185.76947 * 12 11 10 14 14 C 1.46378 * 119.99888 * 5.76530 * 12 11 10 15 15 H 1.08004 * 119.99538 * 5.13863 * 14 12 11 16 16 C 1.40040 * 119.99986 * 185.13663 * 14 12 11 17 17 N 1.30674 * 119.99966 * 354.97234 * 16 14 12 18 18 Si 1.86798 * 120.00110 * 174.97607 * 16 14 12 19 19 H 1.48500 * 109.47520 * 94.99796 * 18 16 14 20 20 H 1.48501 * 109.47372 * 215.00198 * 18 16 14 21 21 H 1.48503 * 109.46905 * 334.99742 * 18 16 14 22 22 H 1.09008 * 109.47049 * 294.15982 * 1 2 3 23 23 H 1.08998 * 109.47482 * 54.15723 * 1 2 3 24 24 H 1.09006 * 109.47463 * 174.16285 * 1 2 3 25 25 H 1.09001 * 109.49753 * 54.46842 * 4 2 1 26 26 H 1.09000 * 109.52290 * 294.39208 * 4 2 1 27 27 H 1.08998 * 109.45752 * 58.65713 * 5 4 2 28 28 H 1.08999 * 109.46048 * 178.61200 * 5 4 2 29 29 H 1.09010 * 109.46810 * 294.99421 * 8 6 5 30 30 H 1.08999 * 109.47831 * 54.99305 * 8 6 5 31 31 H 0.96700 * 114.00122 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.58762 * 185.57877 * 10 6 5 33 33 H 1.09007 * 109.58258 * 65.16049 * 10 6 5 34 34 H 0.96997 * 119.99761 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1702 6 6 3.9569 -1.6656 -0.0633 7 1 3.4982 -2.6528 -0.0050 8 6 5.4788 -1.8115 -0.1197 9 8 5.8351 -2.6712 -1.2043 10 6 3.4650 -0.9470 -1.3236 11 7 2.0225 -0.6996 -1.1944 12 6 1.1673 -1.1071 -2.1531 13 8 -0.0097 -0.8052 -2.0868 14 6 1.6542 -1.9126 -3.2741 15 1 2.6800 -2.2504 -3.2908 16 6 0.7902 -2.2453 -4.3247 17 7 -0.4740 -1.9214 -4.2584 18 14 1.4448 -3.1520 -5.8209 19 1 1.2266 -4.6110 -5.6503 20 1 0.7304 -2.6834 -7.0356 21 1 2.8979 -2.8825 -5.9664 22 1 -0.3633 0.4206 0.9377 23 1 -0.3634 0.6017 -0.8330 24 1 -0.3634 -1.0224 -0.1045 25 1 1.6030 -1.7252 1.2915 26 1 1.7660 -0.1672 2.1371 27 1 4.0061 0.1474 1.0993 28 1 3.9377 -1.3447 2.0670 29 1 5.9325 -0.8316 -0.2687 30 1 5.8378 -2.2395 0.8162 31 1 6.7874 -2.8090 -1.3005 32 1 3.6517 -1.5718 -2.1970 33 1 3.9903 0.0020 -1.4316 34 1 -1.0726 -2.1521 -4.9860 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688725143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -83.908458 kcal Electronic energy + Delta-G solvation = -16728.792096 eV Core-core repulsion = 14047.751251 eV Total energy + Delta-G solvation = -2681.040845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.07324 -36.93351 -35.41545 -32.84029 -31.86344 -31.68648 -27.74038 -26.01218 -24.64528 -23.10384 -21.30727 -19.93888 -18.63560 -17.12449 -16.41201 -15.46476 -15.22673 -14.33022 -14.24330 -13.84744 -13.73276 -13.34359 -12.79788 -12.52085 -12.15166 -11.60295 -11.49878 -11.14297 -11.13940 -10.91976 -10.64410 -10.55694 -10.37189 -10.29552 -10.14579 -10.01165 -9.81044 -9.59995 -8.76944 -7.10451 -7.04629 -6.06985 -4.55668 3.18277 3.25684 3.30312 4.15085 4.37041 4.57248 4.65268 5.11704 5.24173 5.32936 5.41822 5.54687 5.76238 5.83630 5.91156 5.98596 6.01215 6.14102 6.27241 6.35915 6.45340 6.56683 6.61194 6.74661 6.80520 7.17349 7.48514 7.55000 7.73998 7.80252 8.27554 8.46330 9.10716 9.53322 10.64943 10.84592 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.011062 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.868019 B = 2530.510378 C = 3633.928994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.150 3.850 3 H 0.043 0.957 4 C -0.128 4.128 5 C -0.107 4.107 6 C -0.106 4.106 7 H 0.080 0.920 8 C 0.085 3.915 9 O -0.566 6.566 10 C 0.133 3.867 11 N -0.640 5.640 12 C 0.559 3.441 13 O -0.569 6.569 14 C -0.544 4.544 15 H 0.074 0.926 16 C 0.089 3.911 17 N -0.769 5.769 18 Si 0.903 3.097 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.264 1.264 22 H 0.014 0.986 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.372 0.628 32 H 0.100 0.900 33 H 0.036 0.964 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.728 0.879 7.816 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.046 3.954 3 H 0.061 0.939 4 C -0.167 4.167 5 C -0.144 4.144 6 C -0.126 4.126 7 H 0.098 0.902 8 C 0.007 3.993 9 O -0.370 6.370 10 C 0.008 3.992 11 N -0.378 5.378 12 C 0.365 3.635 13 O -0.452 6.452 14 C -0.580 4.580 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.398 5.398 18 Si 0.728 3.272 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.188 1.188 22 H 0.033 0.967 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.218 0.782 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.205 1.042 7.674 12.030 hybrid contribution 1.167 -0.454 -0.514 1.354 sum 10.372 0.587 7.160 12.617 Atomic orbital electron populations 1.22090 0.93205 1.04000 0.98666 1.20853 0.95546 0.93763 0.85287 0.93895 1.21998 0.94904 1.01515 0.98290 1.21438 0.96727 0.99585 0.96690 1.21598 0.93096 1.00959 0.96960 0.90193 1.22190 0.95970 0.92613 0.88546 1.86606 1.28056 1.69800 1.52581 1.21383 0.82321 0.98015 0.97438 1.48244 1.06108 1.62303 1.21124 1.18167 0.84610 0.79640 0.81064 1.90605 1.17027 1.60533 1.77029 1.21075 0.98108 1.34102 1.04760 0.90848 1.25701 0.94232 0.94306 0.98814 1.70027 1.03543 1.36021 1.30190 0.86425 0.79894 0.79869 0.81022 1.19887 1.20518 1.18768 0.96690 0.90280 0.91639 0.91803 0.92031 0.92278 0.92616 0.93924 0.94215 0.78185 0.88193 0.94529 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 7.61 37.15 0.28 -2.41 16 2 C 0.15 3.05 3.49 -67.60 -0.24 2.81 16 3 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16 5 C -0.11 -1.53 5.17 -26.69 -0.14 -1.66 16 6 C -0.11 -1.74 2.58 -90.51 -0.23 -1.98 16 7 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 8 C 0.09 1.11 6.43 37.15 0.24 1.35 16 9 O -0.57 -7.95 13.31 -35.23 -0.47 -8.42 16 10 C 0.13 2.66 5.47 -3.71 -0.02 2.64 16 11 N -0.64 -15.03 2.97 -166.87 -0.50 -15.53 16 12 C 0.56 16.06 7.43 -12.98 -0.10 15.96 16 13 O -0.57 -17.86 10.60 5.21 0.06 -17.80 16 14 C -0.54 -15.64 8.85 -35.63 -0.32 -15.95 16 15 H 0.07 1.99 5.69 -52.48 -0.30 1.69 16 16 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 17 N -0.77 -23.16 11.85 55.55 0.66 -22.50 16 18 Si 0.90 20.64 29.56 -169.99 -5.03 15.62 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 22 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 23 H 0.08 1.97 6.56 -51.93 -0.34 1.63 16 24 H 0.06 1.63 6.93 -51.93 -0.36 1.27 16 25 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.37 3.20 9.12 45.56 0.42 3.62 16 32 H 0.10 2.21 5.16 -51.93 -0.27 1.95 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 270.67 15.07 4.08 4.08 Total: -1.00 -33.95 270.67 -6.17 -40.11 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -4.21 Total: 3.53 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -0.76 Total: 0.91 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.16 Total: -38.03 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.41 Total: -26.22 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.95 -6.17 -40.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688725143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.794 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds