Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.70526 * 2 1 4 4 C 1.53195 * 109.58980 * 120.35099 * 2 1 3 5 5 C 1.53036 * 109.31677 * 174.42027 * 4 2 1 6 6 C 1.53034 * 109.54109 * 298.64002 * 5 4 2 7 7 H 1.09011 * 109.49105 * 301.41247 * 6 5 4 8 8 C 1.52993 * 109.50029 * 181.31857 * 6 5 4 9 9 O 1.42907 * 109.47359 * 174.99873 * 8 6 5 10 10 C 1.53189 * 109.31320 * 61.35759 * 6 5 4 11 11 N 1.46922 * 108.78188 * 305.36936 * 10 6 5 12 12 C 1.34778 * 120.63420 * 233.63141 * 11 10 6 13 13 O 1.21681 * 119.99844 * 185.76947 * 12 11 10 14 14 C 1.46378 * 119.99888 * 5.76530 * 12 11 10 15 15 H 1.08004 * 119.99538 * 5.13863 * 14 12 11 16 16 C 1.40040 * 119.99986 * 185.13663 * 14 12 11 17 17 N 1.30674 * 119.99966 * 354.97234 * 16 14 12 18 18 Si 1.86798 * 120.00110 * 174.97607 * 16 14 12 19 19 H 1.48500 * 109.47520 * 94.99796 * 18 16 14 20 20 H 1.48501 * 109.47372 * 215.00198 * 18 16 14 21 21 H 1.48503 * 109.46905 * 334.99742 * 18 16 14 22 22 H 1.09008 * 109.47049 * 294.15982 * 1 2 3 23 23 H 1.08998 * 109.47482 * 54.15723 * 1 2 3 24 24 H 1.09006 * 109.47463 * 174.16285 * 1 2 3 25 25 H 1.09001 * 109.49753 * 54.46842 * 4 2 1 26 26 H 1.09000 * 109.52290 * 294.39208 * 4 2 1 27 27 H 1.08998 * 109.45752 * 58.65713 * 5 4 2 28 28 H 1.08999 * 109.46048 * 178.61200 * 5 4 2 29 29 H 1.09010 * 109.46810 * 294.99421 * 8 6 5 30 30 H 1.08999 * 109.47831 * 54.99305 * 8 6 5 31 31 H 0.96700 * 114.00122 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.58762 * 185.57877 * 10 6 5 33 33 H 1.09007 * 109.58258 * 65.16049 * 10 6 5 34 34 H 0.96997 * 119.99761 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1702 6 6 3.9569 -1.6656 -0.0633 7 1 3.4982 -2.6528 -0.0050 8 6 5.4788 -1.8115 -0.1197 9 8 5.8351 -2.6712 -1.2043 10 6 3.4650 -0.9470 -1.3236 11 7 2.0225 -0.6996 -1.1944 12 6 1.1673 -1.1071 -2.1531 13 8 -0.0097 -0.8052 -2.0868 14 6 1.6542 -1.9126 -3.2741 15 1 2.6800 -2.2504 -3.2908 16 6 0.7902 -2.2453 -4.3247 17 7 -0.4740 -1.9214 -4.2584 18 14 1.4448 -3.1520 -5.8209 19 1 1.2266 -4.6110 -5.6503 20 1 0.7304 -2.6834 -7.0356 21 1 2.8979 -2.8825 -5.9664 22 1 -0.3633 0.4206 0.9377 23 1 -0.3634 0.6017 -0.8330 24 1 -0.3634 -1.0224 -0.1045 25 1 1.6030 -1.7252 1.2915 26 1 1.7660 -0.1672 2.1371 27 1 4.0061 0.1474 1.0993 28 1 3.9377 -1.3447 2.0670 29 1 5.9325 -0.8316 -0.2687 30 1 5.8378 -2.2395 0.8162 31 1 6.7874 -2.8090 -1.3005 32 1 3.6517 -1.5718 -2.1970 33 1 3.9903 0.0020 -1.4316 34 1 -1.0726 -2.1521 -4.9860 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688725143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = -110.288722 kcal Electronic energy + Delta-G solvation = -16729.936030 eV Core-core repulsion = 14047.751251 eV Total energy + Delta-G solvation = -2682.184779 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.74425 -38.38323 -36.96289 -34.81782 -33.56604 -33.41075 -29.24193 -28.09864 -26.17700 -24.52605 -23.01132 -21.33510 -20.43902 -18.39289 -18.14859 -17.46859 -16.76460 -16.04350 -15.70712 -15.49374 -15.12707 -14.72667 -14.35839 -14.27012 -13.56632 -13.45953 -13.09929 -13.04118 -12.89839 -12.68632 -12.46483 -12.06518 -12.02818 -11.86019 -11.71621 -11.41492 -11.27938 -10.89777 -10.77731 -9.24555 -8.93621 -8.20552 -6.79596 1.36985 1.37954 1.53790 2.24030 2.48229 2.85884 3.41635 3.60607 3.94386 3.99659 4.09446 4.14474 4.35611 4.48679 4.58438 4.68408 4.73797 4.77484 4.88182 4.92106 4.99604 5.05411 5.16791 5.24615 5.35083 5.44687 5.56155 5.64167 5.81535 6.20282 6.51486 6.91515 7.06782 7.48201 8.52427 8.71432 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.011062 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.868019 B = 2530.510378 C = 3633.928994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.140 3.860 3 H 0.062 0.938 4 C -0.121 4.121 5 C -0.099 4.099 6 C -0.103 4.103 7 H 0.048 0.952 8 C 0.090 3.910 9 O -0.596 6.596 10 C 0.130 3.870 11 N -0.645 5.645 12 C 0.540 3.460 13 O -0.610 6.610 14 C -0.573 4.573 15 H 0.082 0.918 16 C 0.032 3.968 17 N -0.820 5.820 18 Si 0.988 3.012 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.252 1.252 22 H 0.056 0.944 23 H 0.039 0.961 24 H 0.024 0.976 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.395 0.605 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.481 0.958 8.993 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.160 4.160 5 C -0.136 4.136 6 C -0.123 4.123 7 H 0.067 0.933 8 C 0.012 3.988 9 O -0.405 6.405 10 C 0.006 3.994 11 N -0.382 5.382 12 C 0.346 3.654 13 O -0.497 6.497 14 C -0.609 4.609 15 H 0.100 0.900 16 C -0.183 4.183 17 N -0.450 5.450 18 Si 0.808 3.192 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.175 1.175 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.245 0.755 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.025 1.129 8.893 14.999 hybrid contribution 0.306 -0.430 -0.816 0.972 sum 12.331 0.699 8.077 14.757 Atomic orbital electron populations 1.21811 0.94991 1.00868 0.99043 1.21135 0.94234 0.95044 0.85888 0.92050 1.21932 0.96692 1.00158 0.97171 1.21428 0.94740 1.00716 0.96762 1.21548 0.95695 0.99075 0.96002 0.93314 1.22170 0.93135 0.93891 0.89614 1.86549 1.30510 1.70186 1.53241 1.21505 0.80374 0.98815 0.98676 1.48141 1.07209 1.61714 1.21112 1.18496 0.84771 0.79903 0.82271 1.90585 1.18816 1.61970 1.78338 1.21532 0.98830 1.34845 1.05741 0.90015 1.26875 0.94207 0.94852 1.02335 1.70182 1.05352 1.37700 1.31755 0.85144 0.79591 0.78356 0.76090 1.18860 1.19447 1.17497 0.92585 0.94226 0.95647 0.93970 0.88553 0.90123 0.89218 0.91859 0.91242 0.75521 0.91116 0.92692 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.97 7.61 71.98 0.55 -4.42 16 2 C 0.14 5.62 3.49 44.97 0.16 5.78 16 3 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -3.69 5.37 30.67 0.16 -3.52 16 5 C -0.10 -2.43 5.17 30.62 0.16 -2.27 16 6 C -0.10 -3.18 2.58 -10.72 -0.03 -3.20 16 7 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 8 C 0.09 2.01 6.43 71.98 0.46 2.47 16 9 O -0.60 -15.42 13.31 -148.98 -1.98 -17.40 16 10 C 0.13 5.12 5.47 86.36 0.47 5.59 16 11 N -0.64 -30.91 2.97 -800.08 -2.38 -33.29 16 12 C 0.54 32.54 7.43 86.36 0.64 33.18 16 13 O -0.61 -40.74 10.60 -4.29 -0.05 -40.78 16 14 C -0.57 -34.21 8.85 24.83 0.22 -33.99 16 15 H 0.08 4.58 5.69 -2.91 -0.02 4.57 16 16 C 0.03 1.87 5.50 85.30 0.47 2.34 16 17 N -0.82 -51.52 11.85 21.83 0.26 -51.26 16 18 Si 0.99 43.16 29.56 68.60 2.03 45.19 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 22 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 23 H 0.04 2.06 6.56 -2.39 -0.02 2.05 16 24 H 0.02 1.31 6.93 -2.38 -0.02 1.29 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.40 5.71 9.12 -74.06 -0.68 5.04 16 32 H 0.07 3.19 5.16 -2.39 -0.01 3.18 16 33 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 Total: -1.00 -79.49 270.67 1.57 -77.93 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.42 Total: 17.67 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 3.27 Total: 1.96 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -2.12 Total: -84.55 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -2.03 Total: -58.18 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -79.49 1.57 -77.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688725143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.362 kcal (2) G-P(sol) polarization free energy of solvation -79.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds