Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 H 1.09005 * 115.56355 * 355.68972 * 3 2 1 5 5 C 1.53076 * 117.51367 * 141.38993 * 3 2 1 6 6 C 1.52999 * 117.50063 * 210.00082 * 3 2 1 7 7 H 1.08998 * 117.49858 * 144.99668 * 6 3 2 8 8 C 1.50702 * 117.49686 * 359.97438 * 6 3 2 9 9 O 1.21293 * 119.99994 * 0.09447 * 8 6 3 10 10 N 1.34779 * 119.99911 * 180.08377 * 8 6 3 11 11 C 1.37093 * 119.99966 * 180.02562 * 10 8 6 12 12 H 1.08003 * 119.99843 * 137.39605 * 11 10 8 13 13 C 1.38946 * 120.00129 * 317.39838 * 11 10 8 14 14 N 1.31405 * 120.00227 * 340.20218 * 13 11 10 15 15 Si 1.86807 * 119.99998 * 160.46958 * 13 11 10 16 16 H 1.48507 * 109.46618 * 60.00416 * 15 13 11 17 17 H 1.48498 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47350 * 300.00356 * 15 13 11 19 19 C 1.46508 * 119.99880 * 0.02562 * 10 8 6 20 20 C 1.52998 * 109.47076 * 125.39799 * 19 10 8 21 21 C 1.53001 * 109.46747 * 245.39560 * 19 10 8 22 22 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47055 * 299.99782 * 1 2 3 24 24 H 1.08994 * 109.47572 * 60.00050 * 1 2 3 25 25 H 1.08997 * 117.51295 * 0.02562 * 5 3 2 26 26 H 1.08998 * 117.51481 * 214.95253 * 5 3 2 27 27 H 0.96998 * 120.00411 * 180.02562 * 14 13 11 28 28 H 1.08997 * 109.46787 * 5.39385 * 19 10 8 29 29 H 1.09001 * 109.46948 * 56.61639 * 20 19 10 30 30 H 1.09004 * 109.46709 * 176.61278 * 20 19 10 31 31 H 1.08996 * 109.47096 * 296.61595 * 20 19 10 32 32 H 1.09001 * 109.47224 * 63.50417 * 21 19 10 33 33 H 1.08999 * 109.47200 * 183.50174 * 21 19 10 34 34 H 1.09003 * 109.47522 * 303.50419 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1339 -0.0739 5 6 3.2670 1.5199 0.8472 6 6 3.3712 1.4728 -0.6786 7 1 3.5620 2.4112 -1.1992 8 6 3.9965 0.2481 -1.2953 9 8 3.4208 -0.8182 -1.2435 10 7 5.1954 0.3378 -1.9046 11 6 5.7640 -0.7762 -2.4661 12 1 6.2417 -0.7098 -3.4324 13 6 5.7256 -1.9906 -1.7920 14 7 5.5123 -2.0160 -0.4956 15 14 5.9845 -3.5867 -2.7274 16 1 7.3248 -3.5736 -3.3670 17 1 5.8958 -4.7319 -1.7864 18 1 4.9385 -3.7232 -3.7726 19 6 5.8909 1.6257 -1.9668 20 6 7.2979 1.4741 -1.3853 21 6 5.9877 2.0831 -3.4236 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.6507 0.6652 1.4042 26 1 3.3892 2.4893 1.3302 27 1 5.4859 -2.8638 -0.0250 28 1 5.3369 2.3660 -1.3896 29 1 7.8314 0.6913 -1.9244 30 1 7.8363 2.4165 -1.4864 31 1 7.2284 1.2066 -0.3310 32 1 4.9859 2.2510 -3.8191 33 1 6.5591 3.0098 -3.4763 34 1 6.4869 1.3144 -4.0135 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689939113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = -32.946687 kcal Electronic energy + Delta-G solvation = -16809.419944 eV Core-core repulsion = 14130.588967 eV Total energy + Delta-G solvation = -2678.830977 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.86100 -37.20109 -34.97422 -33.98170 -32.02334 -29.71850 -26.33344 -26.23360 -25.42335 -22.58555 -21.52380 -20.42509 -18.68948 -17.07553 -15.65361 -15.23824 -14.87769 -14.50909 -14.35084 -13.60126 -13.45394 -12.97669 -12.85311 -12.48612 -11.86372 -11.71172 -11.41962 -11.28042 -11.00377 -10.87175 -10.78576 -10.65206 -10.58812 -10.34080 -10.10084 -9.78883 -9.58920 -8.61111 -8.46433 -7.72224 -6.86606 -5.92750 -3.64838 3.40768 3.48116 3.52104 4.00914 4.18363 4.42684 4.83916 5.00022 5.34057 5.46935 5.54463 5.59439 5.71486 5.76768 5.82898 5.93193 6.00507 6.03512 6.12782 6.19764 6.31793 6.33854 6.60000 6.65444 6.69343 6.79902 7.05714 7.25488 7.79149 7.83744 8.47260 9.28298 9.44176 9.89779 10.59567 11.16234 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.012300 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.386800 B = 2275.896491 C = 3142.325445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.314 6.314 3 C 0.036 3.964 4 H 0.103 0.897 5 C -0.168 4.168 6 C -0.179 4.179 7 H 0.108 0.892 8 C 0.503 3.497 9 O -0.509 6.509 10 N -0.452 5.452 11 C -0.342 4.342 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.829 5.829 15 Si 0.904 3.096 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.125 3.875 20 C -0.142 4.142 21 C -0.155 4.155 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.035 0.965 25 H 0.105 0.895 26 H 0.094 0.906 27 H 0.261 0.739 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 9.257 0.676 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C -0.023 4.023 4 H 0.121 0.879 5 C -0.206 4.206 6 C -0.201 4.201 7 H 0.126 0.874 8 C 0.289 3.711 9 O -0.384 6.384 10 N -0.176 5.176 11 C -0.469 4.469 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.463 5.463 15 Si 0.732 3.268 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.202 1.202 19 C 0.020 3.980 20 C -0.200 4.200 21 C -0.213 4.213 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.887 8.376 0.875 9.275 hybrid contribution 0.039 -0.447 -0.354 0.572 sum -3.848 7.929 0.521 8.829 Atomic orbital electron populations 1.22737 0.82768 1.02313 0.98794 1.88309 1.17596 1.23571 1.93595 1.22533 0.89042 0.86797 1.03922 0.87923 1.23321 1.01402 1.02878 0.92951 1.22953 1.00486 1.00662 0.95983 0.87383 1.18856 0.81610 0.87620 0.83019 1.90569 1.61500 1.28569 1.57760 1.43283 1.14753 1.06290 1.53311 1.18716 1.39971 0.86642 1.01565 0.90887 1.25129 0.95142 0.99138 0.94298 1.69861 1.42968 1.26357 1.07087 0.86416 0.77979 0.82688 0.79708 1.20644 1.21442 1.20217 1.20984 0.93856 0.88386 0.94755 1.21910 0.96688 0.99955 1.01459 1.22107 1.00859 1.00052 0.98311 0.89989 0.94932 0.94638 0.87663 0.88737 0.92904 0.91798 0.91586 0.94338 0.93027 0.93538 0.93535 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.88 101.05 1.10 1.58 16 2 O -0.31 -6.76 8.84 -57.36 -0.51 -7.27 16 3 C 0.04 0.67 6.41 -26.69 -0.17 0.50 16 4 H 0.10 1.47 7.93 -51.93 -0.41 1.06 16 5 C -0.17 -3.07 10.19 -26.69 -0.27 -3.35 16 6 C -0.18 -3.66 4.94 -91.77 -0.45 -4.11 16 7 H 0.11 1.88 6.76 -51.93 -0.35 1.53 16 8 C 0.50 13.34 6.76 -10.98 -0.07 13.26 16 9 O -0.51 -15.70 12.58 -16.58 -0.21 -15.90 16 10 N -0.45 -11.61 2.45 -107.72 -0.26 -11.87 16 11 C -0.34 -9.59 7.73 -14.94 -0.12 -9.71 16 12 H 0.07 1.99 7.05 -52.48 -0.37 1.62 16 13 C 0.07 2.13 4.33 -17.47 -0.08 2.05 16 14 N -0.83 -25.38 11.70 55.50 0.65 -24.73 16 15 Si 0.90 22.78 29.60 -169.99 -5.03 17.75 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 19 C 0.13 2.54 3.11 -67.93 -0.21 2.33 16 20 C -0.14 -2.77 9.14 37.16 0.34 -2.43 16 21 C -0.15 -2.73 9.29 37.16 0.35 -2.39 16 22 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 23 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 2.27 8.14 -51.93 -0.42 1.85 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.06 1.18 5.54 -51.93 -0.29 0.89 16 29 H 0.07 1.40 7.43 -51.93 -0.39 1.01 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.15 7.11 -51.93 -0.37 0.79 16 LS Contribution 282.65 15.07 4.26 4.26 Total: -1.00 -34.67 282.65 -5.80 -40.47 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -5.11 Total: -0.45 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.41 Total: -2.26 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.39 Total: -36.60 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.72 Total: -23.17 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.67 -5.80 -40.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689939113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.526 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds