Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00056 * 2 1 4 4 H 1.09005 * 115.56355 * 355.68972 * 3 2 1 5 5 C 1.53076 * 117.51367 * 141.38993 * 3 2 1 6 6 C 1.52999 * 117.50063 * 210.00082 * 3 2 1 7 7 H 1.08998 * 117.49858 * 144.99668 * 6 3 2 8 8 C 1.50702 * 117.49686 * 359.97438 * 6 3 2 9 9 O 1.21293 * 119.99994 * 0.09447 * 8 6 3 10 10 N 1.34779 * 119.99911 * 180.08377 * 8 6 3 11 11 C 1.37093 * 119.99966 * 180.02562 * 10 8 6 12 12 H 1.08003 * 119.99843 * 137.39605 * 11 10 8 13 13 C 1.38946 * 120.00129 * 317.39838 * 11 10 8 14 14 N 1.31405 * 120.00227 * 340.20218 * 13 11 10 15 15 Si 1.86807 * 119.99998 * 160.46958 * 13 11 10 16 16 H 1.48507 * 109.46618 * 60.00416 * 15 13 11 17 17 H 1.48498 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47350 * 300.00356 * 15 13 11 19 19 C 1.46508 * 119.99880 * 0.02562 * 10 8 6 20 20 C 1.52998 * 109.47076 * 125.39799 * 19 10 8 21 21 C 1.53001 * 109.46747 * 245.39560 * 19 10 8 22 22 H 1.09003 * 109.47464 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47055 * 299.99782 * 1 2 3 24 24 H 1.08994 * 109.47572 * 60.00050 * 1 2 3 25 25 H 1.08997 * 117.51295 * 0.02562 * 5 3 2 26 26 H 1.08998 * 117.51481 * 214.95253 * 5 3 2 27 27 H 0.96998 * 120.00411 * 180.02562 * 14 13 11 28 28 H 1.08997 * 109.46787 * 5.39385 * 19 10 8 29 29 H 1.09001 * 109.46948 * 56.61639 * 20 19 10 30 30 H 1.09004 * 109.46709 * 176.61278 * 20 19 10 31 31 H 1.08996 * 109.47096 * 296.61595 * 20 19 10 32 32 H 1.09001 * 109.47224 * 63.50417 * 21 19 10 33 33 H 1.08999 * 109.47200 * 183.50174 * 21 19 10 34 34 H 1.09003 * 109.47522 * 303.50419 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1339 -0.0739 5 6 3.2670 1.5199 0.8472 6 6 3.3712 1.4728 -0.6786 7 1 3.5620 2.4112 -1.1992 8 6 3.9965 0.2481 -1.2953 9 8 3.4208 -0.8182 -1.2435 10 7 5.1954 0.3378 -1.9046 11 6 5.7640 -0.7762 -2.4661 12 1 6.2417 -0.7098 -3.4324 13 6 5.7256 -1.9906 -1.7920 14 7 5.5123 -2.0160 -0.4956 15 14 5.9845 -3.5867 -2.7274 16 1 7.3248 -3.5736 -3.3670 17 1 5.8958 -4.7319 -1.7864 18 1 4.9385 -3.7232 -3.7726 19 6 5.8909 1.6257 -1.9668 20 6 7.2979 1.4741 -1.3853 21 6 5.9877 2.0831 -3.4236 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.6507 0.6652 1.4042 26 1 3.3892 2.4893 1.3302 27 1 5.4859 -2.8638 -0.0250 28 1 5.3369 2.3660 -1.3896 29 1 7.8314 0.6913 -1.9244 30 1 7.8363 2.4165 -1.4864 31 1 7.2284 1.2066 -0.3310 32 1 4.9859 2.2510 -3.8191 33 1 6.5591 3.0098 -3.4763 34 1 6.4869 1.3144 -4.0135 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689939113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = -56.233399 kcal Electronic energy + Delta-G solvation = -16810.429732 eV Core-core repulsion = 14130.588967 eV Total energy + Delta-G solvation = -2679.840764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59547 -38.79912 -36.76399 -35.59979 -34.08958 -31.59143 -27.83907 -27.67106 -27.23608 -24.38839 -22.92481 -22.10618 -20.56149 -18.69807 -17.52955 -17.01980 -16.50241 -16.28650 -15.75429 -15.38723 -15.20827 -14.64418 -14.39005 -14.05415 -13.60755 -13.35037 -13.13644 -13.00101 -12.80326 -12.57388 -12.47221 -12.22703 -12.13045 -12.06494 -11.90846 -11.44448 -11.13009 -10.68481 -9.95352 -9.72952 -8.93158 -8.10535 -5.84370 1.35903 1.44949 1.47945 2.29347 2.44415 2.84842 3.08475 3.32761 3.41454 3.98937 4.04954 4.21325 4.24476 4.43069 4.49454 4.60265 4.61246 4.62811 4.71732 4.84877 4.86624 4.95317 5.08909 5.14664 5.15322 5.26159 5.51116 5.61533 5.66069 6.30600 6.54645 7.17074 7.42276 7.87426 8.59696 8.97961 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.012300 C = 0.008908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.386800 B = 2275.896491 C = 3142.325445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.370 6.370 3 C 0.044 3.956 4 H 0.155 0.845 5 C -0.157 4.157 6 C -0.198 4.198 7 H 0.146 0.854 8 C 0.484 3.516 9 O -0.567 6.567 10 N -0.468 5.468 11 C -0.347 4.347 12 H 0.075 0.925 13 C 0.020 3.980 14 N -0.867 5.867 15 Si 0.960 3.040 16 H -0.257 1.257 17 H -0.292 1.292 18 H -0.284 1.284 19 C 0.115 3.885 20 C -0.134 4.134 21 C -0.146 4.146 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.146 0.854 27 H 0.252 0.748 28 H 0.090 0.910 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 12.047 0.210 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C -0.015 4.015 4 H 0.173 0.827 5 C -0.195 4.195 6 C -0.219 4.219 7 H 0.163 0.837 8 C 0.272 3.728 9 O -0.447 6.447 10 N -0.191 5.191 11 C -0.475 4.475 12 H 0.093 0.907 13 C -0.186 4.186 14 N -0.503 5.503 15 Si 0.786 3.214 16 H -0.181 1.181 17 H -0.218 1.218 18 H -0.211 1.211 19 C 0.012 3.988 20 C -0.192 4.192 21 C -0.204 4.204 22 H 0.096 0.904 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.164 0.836 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.106 0.894 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.136 11.204 0.385 11.949 hybrid contribution 0.109 -1.242 -0.239 1.269 sum -4.027 9.962 0.146 10.746 Atomic orbital electron populations 1.22940 0.80183 1.02943 1.00962 1.88245 1.20758 1.26009 1.93770 1.22974 0.89270 0.87194 1.02052 0.82749 1.23339 1.01328 1.03589 0.91202 1.22883 1.02566 0.99209 0.97273 0.83690 1.19910 0.81564 0.88970 0.82342 1.90521 1.63100 1.31321 1.59742 1.43618 1.15174 1.07543 1.52767 1.18982 1.38936 0.87947 1.01587 0.90720 1.25926 0.95435 1.02253 0.94945 1.69993 1.45614 1.26144 1.08531 0.85542 0.78623 0.79090 0.78191 1.18124 1.21841 1.21064 1.21333 0.93889 0.86440 0.97146 1.21838 0.96627 1.01403 0.99318 1.22020 1.01505 1.01165 0.95709 0.90390 0.91901 0.93067 0.92168 0.83626 0.93889 0.89245 0.94096 0.89764 0.95442 0.93334 0.89427 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.88 113.37 1.23 2.00 16 2 O -0.37 -15.83 8.84 -127.82 -1.13 -16.96 16 3 C 0.04 1.50 6.41 30.62 0.20 1.70 16 4 H 0.16 3.61 7.93 -2.38 -0.02 3.60 16 5 C -0.16 -5.44 10.19 30.62 0.31 -5.13 16 6 C -0.20 -7.71 4.94 -11.54 -0.06 -7.76 16 7 H 0.15 4.44 6.76 -2.39 -0.02 4.42 16 8 C 0.48 25.94 6.76 87.66 0.59 26.54 16 9 O -0.57 -36.31 12.58 18.09 0.23 -36.08 16 10 N -0.47 -24.10 2.45 -613.11 -1.50 -25.60 16 11 C -0.35 -19.83 7.73 84.04 0.65 -19.18 16 12 H 0.08 4.12 7.05 -2.91 -0.02 4.10 16 13 C 0.02 1.20 4.33 84.93 0.37 1.57 16 14 N -0.87 -55.47 11.70 21.66 0.25 -55.22 16 15 Si 0.96 48.16 29.60 68.60 2.03 50.19 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 18 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 19 C 0.12 4.47 3.11 44.99 0.14 4.61 16 20 C -0.13 -5.03 9.14 71.98 0.66 -4.37 16 21 C -0.15 -4.73 9.29 71.98 0.67 -4.06 16 22 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.15 3.49 8.14 -2.39 -0.02 3.47 16 27 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 28 H 0.09 2.99 5.54 -2.39 -0.01 2.98 16 29 H 0.04 1.71 7.43 -2.39 -0.02 1.69 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.04 1.48 7.11 -2.39 -0.02 1.46 16 Total: -1.00 -80.82 282.65 5.71 -75.10 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.07 Total: 12.65 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 4.76 Total: -4.09 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.25 Total: -80.82 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.90 Total: -53.04 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -80.82 5.71 -75.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689939113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.871 kcal (2) G-P(sol) polarization free energy of solvation -80.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds