Wall clock time and date at job start Mon Mar 30 2020 03:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00185 * 2 1 4 4 H 1.09009 * 115.56143 * 355.69353 * 3 2 1 5 5 C 1.53074 * 117.49396 * 141.40276 * 3 2 1 6 6 C 1.52998 * 59.98460 * 107.48893 * 5 3 2 7 7 H 1.08992 * 117.49815 * 252.49811 * 6 5 3 8 8 C 1.50702 * 117.49676 * 107.50194 * 6 5 3 9 9 O 1.21288 * 119.99948 * 320.00319 * 8 6 5 10 10 N 1.34775 * 119.99619 * 140.00321 * 8 6 5 11 11 C 1.37100 * 120.00018 * 180.78714 * 10 8 6 12 12 H 1.07999 * 119.99752 * 314.97716 * 11 10 8 13 13 C 1.38949 * 120.00147 * 134.97170 * 11 10 8 14 14 N 1.31414 * 119.99812 * 12.55130 * 13 11 10 15 15 Si 1.86802 * 120.00364 * 192.55266 * 13 11 10 16 16 H 1.48501 * 109.47151 * 89.99746 * 15 13 11 17 17 H 1.48499 * 109.47243 * 210.00072 * 15 13 11 18 18 H 1.48501 * 109.46447 * 329.99904 * 15 13 11 19 19 C 1.46498 * 120.00511 * 0.79316 * 10 8 6 20 20 C 1.53008 * 109.47130 * 60.16577 * 19 10 8 21 21 C 1.53005 * 109.46682 * 300.17107 * 19 10 8 22 22 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46926 * 299.99298 * 1 2 3 24 24 H 1.08998 * 109.47795 * 59.99161 * 1 2 3 25 25 H 1.09001 * 117.49452 * 0.02562 * 5 3 2 26 26 H 1.09003 * 117.53020 * 214.96001 * 5 3 2 27 27 H 0.97000 * 120.00282 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.47547 * 180.16971 * 19 10 8 29 29 H 1.09001 * 109.46621 * 75.34242 * 20 19 10 30 30 H 1.08995 * 109.47083 * 195.34300 * 20 19 10 31 31 H 1.09000 * 109.46895 * 315.34358 * 20 19 10 32 32 H 1.08998 * 109.47240 * 59.99676 * 21 19 10 33 33 H 1.09006 * 109.47068 * 179.97438 * 21 19 10 34 34 H 1.09000 * 109.47051 * 299.99622 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1340 -0.0738 5 6 3.2672 1.5193 0.8471 6 6 3.3712 1.4728 -0.6786 7 1 3.8231 0.5873 -1.1255 8 6 3.6352 2.7705 -1.3979 9 8 3.0885 3.7892 -1.0313 10 7 4.4789 2.7990 -2.4486 11 6 4.7316 3.9825 -3.0929 12 1 3.9170 4.6469 -3.3408 13 6 6.0355 4.3271 -3.4269 14 7 6.9917 3.4285 -3.3545 15 14 6.4295 6.0676 -3.9789 16 1 6.7775 6.8952 -2.7960 17 1 7.5784 6.0406 -4.9194 18 1 5.2458 6.6507 -4.6601 19 6 5.1258 1.5654 -2.9023 20 6 4.0573 0.5521 -3.3178 21 6 5.9667 0.9824 -1.7647 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 3.6504 0.6641 1.4037 26 1 3.3899 2.4885 1.3306 27 1 7.9021 3.6690 -3.5873 28 1 5.7694 1.7847 -3.7543 29 1 3.6424 0.8374 -4.2845 30 1 4.5057 -0.4385 -3.3929 31 1 3.2627 0.5357 -2.5718 32 1 5.3231 0.7631 -0.9128 33 1 6.4477 0.0643 -2.1021 34 1 6.7279 1.7042 -1.4688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689939116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:07 Heat of formation + Delta-G solvation = -30.815397 kcal Electronic energy + Delta-G solvation = -16675.083159 eV Core-core repulsion = 13996.344602 eV Total energy + Delta-G solvation = -2678.738557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.43722 -37.58969 -35.43994 -34.29978 -32.31441 -30.10619 -26.62420 -26.26162 -25.39596 -23.20924 -21.73103 -20.45611 -18.60177 -17.47974 -16.26177 -15.43626 -15.28605 -14.81766 -14.43013 -13.94607 -13.65548 -13.13595 -13.04618 -12.51770 -12.19260 -11.98802 -11.59474 -11.37912 -11.16888 -11.10370 -11.07374 -10.97740 -10.48721 -10.27525 -10.13911 -9.85004 -9.48862 -8.87894 -8.72941 -8.37034 -7.36713 -6.28680 -4.00684 3.20963 3.29789 3.33284 3.52064 3.78445 4.19520 4.61598 4.87007 5.10585 5.29537 5.32657 5.43038 5.53202 5.64201 5.74276 5.79944 5.95724 5.97843 6.14190 6.20008 6.32855 6.50858 6.51971 6.60200 6.74899 6.87428 7.35585 7.41041 7.49260 7.61320 8.37310 8.60734 9.22502 9.44232 10.07448 10.75230 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038103 B = 0.008283 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.672164 B = 3379.452314 C = 3680.571453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.033 3.967 4 H 0.117 0.883 5 C -0.159 4.159 6 C -0.188 4.188 7 H 0.142 0.858 8 C 0.494 3.506 9 O -0.586 6.586 10 N -0.434 5.434 11 C -0.310 4.310 12 H 0.086 0.914 13 C 0.044 3.956 14 N -0.874 5.874 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.136 3.864 20 C -0.182 4.182 21 C -0.161 4.161 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.267 0.733 28 H 0.119 0.881 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.407 -7.283 3.363 9.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.281 6.281 3 C -0.026 4.026 4 H 0.134 0.866 5 C -0.197 4.197 6 C -0.209 4.209 7 H 0.159 0.841 8 C 0.282 3.718 9 O -0.470 6.470 10 N -0.153 5.153 11 C -0.438 4.438 12 H 0.104 0.896 13 C -0.160 4.160 14 N -0.511 5.511 15 Si 0.746 3.254 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.195 1.195 19 C 0.032 3.968 20 C -0.240 4.240 21 C -0.219 4.219 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.333 -6.955 3.448 9.418 hybrid contribution 0.258 0.866 -0.339 0.965 sum -5.075 -6.089 3.110 8.514 Atomic orbital electron populations 1.22768 0.80958 1.02355 1.00226 1.87778 1.19757 1.26298 1.94220 1.22760 0.89907 0.85641 1.04259 0.86574 1.23360 1.00491 1.03362 0.92522 1.23572 1.00654 1.00904 0.95788 0.84072 1.19342 0.83763 0.87665 0.81023 1.90495 1.53826 1.35376 1.67331 1.43432 1.39500 1.07369 1.25018 1.19354 0.92601 0.96350 1.35530 0.89625 1.25518 0.95371 0.98633 0.96479 1.69823 1.01559 1.32694 1.47057 0.86060 0.77986 0.83099 0.78254 1.20302 1.21116 1.19513 1.21105 0.92947 0.83540 0.99210 1.22723 1.00435 0.99080 1.01782 1.22409 1.00817 1.00090 0.98545 0.89771 0.93983 0.93829 0.88225 0.87702 0.92239 0.86318 0.93178 0.92885 0.91855 0.93078 0.93823 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.88 101.05 1.10 1.50 16 2 O -0.36 -5.82 10.96 -35.23 -0.39 -6.20 16 3 C 0.03 0.58 5.97 -26.69 -0.16 0.42 16 4 H 0.12 2.10 7.74 -51.92 -0.40 1.69 16 5 C -0.16 -2.79 10.06 -26.69 -0.27 -3.05 16 6 C -0.19 -3.77 2.75 -91.77 -0.25 -4.02 16 7 H 0.14 2.70 3.45 -51.93 -0.18 2.53 16 8 C 0.49 12.41 6.86 -10.99 -0.08 12.33 16 9 O -0.59 -16.49 16.42 5.55 0.09 -16.40 16 10 N -0.43 -11.25 2.51 -107.72 -0.27 -11.52 16 11 C -0.31 -8.72 8.78 -14.93 -0.13 -8.85 16 12 H 0.09 2.50 7.84 -52.49 -0.41 2.09 16 13 C 0.04 1.18 5.38 -17.47 -0.09 1.08 16 14 N -0.87 -23.07 10.14 55.50 0.56 -22.51 16 15 Si 0.92 21.10 29.57 -169.99 -5.03 16.07 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.14 3.07 2.28 -67.92 -0.16 2.91 16 20 C -0.18 -3.46 8.83 37.16 0.33 -3.13 16 21 C -0.16 -3.30 8.76 37.16 0.33 -2.98 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.45 8.14 -51.92 -0.42 0.02 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 26 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.12 2.96 5.99 -51.93 -0.31 2.65 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 31 H 0.06 1.20 4.73 -51.93 -0.25 0.96 16 32 H 0.05 0.98 4.54 -51.93 -0.24 0.75 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.63 7.51 -51.93 -0.39 1.24 16 LS Contribution 276.62 15.07 4.17 4.17 Total: -1.00 -30.41 276.62 -4.93 -35.34 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.69 Total: 4.85 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 0.62 Total: -3.79 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.29 Total: -34.03 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.29 Total: -22.61 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.41 -4.93 -35.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689939116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.520 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds