Wall clock time and date at job start Mon Mar 30 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00185 * 2 1 4 4 H 1.09009 * 115.56143 * 355.69353 * 3 2 1 5 5 C 1.53074 * 117.49396 * 141.40276 * 3 2 1 6 6 C 1.52998 * 59.98460 * 107.48893 * 5 3 2 7 7 H 1.08992 * 117.49815 * 252.49811 * 6 5 3 8 8 C 1.50702 * 117.49676 * 107.50194 * 6 5 3 9 9 O 1.21288 * 119.99948 * 320.00319 * 8 6 5 10 10 N 1.34775 * 119.99619 * 140.00321 * 8 6 5 11 11 C 1.37100 * 120.00018 * 180.78714 * 10 8 6 12 12 H 1.07999 * 119.99752 * 314.97716 * 11 10 8 13 13 C 1.38949 * 120.00147 * 134.97170 * 11 10 8 14 14 N 1.31414 * 119.99812 * 12.55130 * 13 11 10 15 15 Si 1.86802 * 120.00364 * 192.55266 * 13 11 10 16 16 H 1.48501 * 109.47151 * 89.99746 * 15 13 11 17 17 H 1.48499 * 109.47243 * 210.00072 * 15 13 11 18 18 H 1.48501 * 109.46447 * 329.99904 * 15 13 11 19 19 C 1.46498 * 120.00511 * 0.79316 * 10 8 6 20 20 C 1.53008 * 109.47130 * 60.16577 * 19 10 8 21 21 C 1.53005 * 109.46682 * 300.17107 * 19 10 8 22 22 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46926 * 299.99298 * 1 2 3 24 24 H 1.08998 * 109.47795 * 59.99161 * 1 2 3 25 25 H 1.09001 * 117.49452 * 0.02562 * 5 3 2 26 26 H 1.09003 * 117.53020 * 214.96001 * 5 3 2 27 27 H 0.97000 * 120.00282 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.47547 * 180.16971 * 19 10 8 29 29 H 1.09001 * 109.46621 * 75.34242 * 20 19 10 30 30 H 1.08995 * 109.47083 * 195.34300 * 20 19 10 31 31 H 1.09000 * 109.46895 * 315.34358 * 20 19 10 32 32 H 1.08998 * 109.47240 * 59.99676 * 21 19 10 33 33 H 1.09006 * 109.47068 * 179.97438 * 21 19 10 34 34 H 1.09000 * 109.47051 * 299.99622 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3057 2.1340 -0.0738 5 6 3.2672 1.5193 0.8471 6 6 3.3712 1.4728 -0.6786 7 1 3.8231 0.5873 -1.1255 8 6 3.6352 2.7705 -1.3979 9 8 3.0885 3.7892 -1.0313 10 7 4.4789 2.7990 -2.4486 11 6 4.7316 3.9825 -3.0929 12 1 3.9170 4.6469 -3.3408 13 6 6.0355 4.3271 -3.4269 14 7 6.9917 3.4285 -3.3545 15 14 6.4295 6.0676 -3.9789 16 1 6.7775 6.8952 -2.7960 17 1 7.5784 6.0406 -4.9194 18 1 5.2458 6.6507 -4.6601 19 6 5.1258 1.5654 -2.9023 20 6 4.0573 0.5521 -3.3178 21 6 5.9667 0.9824 -1.7647 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 3.6504 0.6641 1.4037 26 1 3.3899 2.4885 1.3306 27 1 7.9021 3.6690 -3.5873 28 1 5.7694 1.7847 -3.7543 29 1 3.6424 0.8374 -4.2845 30 1 4.5057 -0.4385 -3.3929 31 1 3.2627 0.5357 -2.5718 32 1 5.3231 0.7631 -0.9128 33 1 6.4477 0.0643 -2.1021 34 1 6.7279 1.7042 -1.4688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689939116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:06 Heat of formation + Delta-G solvation = -50.727865 kcal Electronic energy + Delta-G solvation = -16675.946628 eV Core-core repulsion = 13996.344602 eV Total energy + Delta-G solvation = -2679.602027 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17033 -39.01652 -37.31580 -35.81261 -34.24231 -32.00261 -27.89496 -27.73296 -27.19363 -24.99043 -23.08647 -22.18499 -20.40245 -19.27119 -17.84025 -17.21090 -16.91979 -16.12435 -15.92956 -15.63197 -15.52369 -14.87954 -14.67730 -14.13153 -13.76474 -13.44917 -13.28898 -13.01449 -12.96213 -12.88766 -12.41886 -12.27786 -12.20470 -12.06780 -11.90567 -11.36980 -11.17150 -10.71529 -10.50932 -10.06733 -9.35517 -8.31656 -6.11862 1.36095 1.40208 1.50195 1.82495 2.23472 2.50355 2.91855 3.05144 3.27130 3.83349 3.94181 4.15660 4.16330 4.34381 4.48841 4.55013 4.56505 4.64844 4.75864 4.81090 4.85067 4.89036 5.03536 5.07218 5.10470 5.28610 5.43066 5.63408 5.75849 6.18831 6.28960 6.62109 7.18217 7.49421 8.09557 8.69745 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.038103 B = 0.008283 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.672164 B = 3379.452314 C = 3680.571453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.369 6.369 3 C 0.050 3.950 4 H 0.108 0.892 5 C -0.145 4.145 6 C -0.204 4.204 7 H 0.155 0.845 8 C 0.482 3.518 9 O -0.631 6.631 10 N -0.447 5.447 11 C -0.349 4.349 12 H 0.059 0.941 13 C 0.011 3.989 14 N -0.880 5.880 15 Si 0.978 3.022 16 H -0.281 1.281 17 H -0.267 1.267 18 H -0.271 1.271 19 C 0.132 3.868 20 C -0.172 4.172 21 C -0.151 4.151 22 H 0.113 0.887 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.131 0.869 26 H 0.095 0.905 27 H 0.273 0.727 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 -8.952 3.848 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.287 6.287 3 C -0.009 4.009 4 H 0.125 0.875 5 C -0.183 4.183 6 C -0.224 4.224 7 H 0.172 0.828 8 C 0.272 3.728 9 O -0.519 6.519 10 N -0.165 5.165 11 C -0.478 4.478 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.517 5.517 15 Si 0.802 3.198 16 H -0.207 1.207 17 H -0.192 1.192 18 H -0.196 1.196 19 C 0.029 3.971 20 C -0.230 4.230 21 C -0.209 4.209 22 H 0.131 0.869 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.149 0.851 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.353 -8.666 3.918 10.913 hybrid contribution 0.225 1.353 -0.497 1.459 sum -5.128 -7.313 3.421 9.564 Atomic orbital electron populations 1.23075 0.78738 1.04492 1.00908 1.87763 1.22087 1.24776 1.94114 1.22567 0.89225 0.86427 1.02658 0.87450 1.23455 0.99999 1.04115 0.90724 1.23374 1.03610 0.98363 0.97086 0.82836 1.20134 0.82781 0.89144 0.80780 1.90445 1.55371 1.37508 1.68560 1.43700 1.39763 1.07845 1.25240 1.19321 0.92763 0.97859 1.37807 0.92279 1.26162 0.94853 1.01929 0.96271 1.69907 1.01721 1.33659 1.46375 0.85180 0.78092 0.78588 0.77892 1.20700 1.19175 1.19616 1.21179 0.93774 0.83226 0.98946 1.22603 0.99473 0.99595 1.01302 1.22303 0.99935 1.00261 0.98381 0.86920 0.92637 0.93896 0.85133 0.88700 0.91755 0.89066 0.93782 0.89442 0.91673 0.91630 0.90810 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.88 113.37 1.23 1.73 16 2 O -0.37 -10.78 10.96 -148.98 -1.63 -12.41 16 3 C 0.05 1.70 5.97 30.62 0.18 1.88 16 4 H 0.11 3.82 7.74 -2.38 -0.02 3.80 16 5 C -0.15 -4.79 10.06 30.62 0.31 -4.49 16 6 C -0.20 -7.93 2.75 -11.54 -0.03 -7.96 16 7 H 0.15 5.53 3.45 -2.39 -0.01 5.53 16 8 C 0.48 24.66 6.86 87.66 0.60 25.26 16 9 O -0.63 -36.82 16.42 -3.06 -0.05 -36.87 16 10 N -0.45 -23.70 2.51 -613.12 -1.54 -25.24 16 11 C -0.35 -20.36 8.78 84.04 0.74 -19.62 16 12 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 13 C 0.01 0.61 5.38 84.93 0.46 1.07 16 14 N -0.88 -46.81 10.14 21.66 0.22 -46.59 16 15 Si 0.98 43.81 29.57 68.60 2.03 45.84 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 C 0.13 5.93 2.28 45.00 0.10 6.03 16 20 C -0.17 -6.26 8.83 71.98 0.64 -5.62 16 21 C -0.15 -6.00 8.76 71.98 0.63 -5.37 16 22 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 26 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 27 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.09 4.59 5.99 -2.39 -0.01 4.58 16 29 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.56 8.05 -2.39 -0.02 2.54 16 31 H 0.06 2.36 4.73 -2.39 -0.01 2.35 16 32 H 0.07 2.39 4.54 -2.39 -0.01 2.38 16 33 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.04 1.76 7.51 -2.39 -0.02 1.74 16 Total: -1.00 -67.35 276.62 4.97 -62.38 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 1.09 Total: 20.01 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.86 Total: -7.11 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -1.32 Total: -71.84 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.68 Total: -49.28 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -67.35 4.97 -62.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689939116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.652 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds