Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46575 * 2 1 4 4 H 1.08996 * 109.47425 * 307.08006 * 3 2 1 5 5 C 1.50700 * 109.46738 * 187.07560 * 3 2 1 6 6 H 1.08002 * 120.00590 * 242.50282 * 5 3 2 7 7 C 1.37889 * 119.99621 * 62.51167 * 5 3 2 8 8 N 1.31512 * 119.99706 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99739 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47287 * 89.99658 * 9 7 5 11 11 H 1.48500 * 109.46811 * 209.99856 * 9 7 5 12 12 H 1.48500 * 109.47134 * 329.99684 * 9 7 5 13 13 C 1.53002 * 109.47164 * 67.08267 * 3 2 1 14 14 C 1.50695 * 109.90551 * 291.45060 * 13 3 2 15 15 O 1.20829 * 120.00156 * 330.03946 * 14 13 3 16 16 O 1.34232 * 120.00386 * 150.31639 * 14 13 3 17 17 C 1.53986 * 109.92009 * 170.34484 * 13 3 2 18 18 C 1.54599 * 105.14147 * 241.67527 * 17 13 3 19 19 C 1.54938 * 102.92049 * 21.95700 * 18 17 13 20 20 N 1.47911 * 110.08067 * 52.65420 * 13 3 2 21 21 H 1.08999 * 109.46897 * 170.56507 * 1 2 3 22 22 H 1.08995 * 109.46915 * 290.55890 * 1 2 3 23 23 H 1.08999 * 109.47667 * 50.56624 * 1 2 3 24 24 H 1.09001 * 109.46586 * 240.00596 * 2 1 3 25 25 H 1.08997 * 109.46990 * 120.00323 * 2 1 3 26 26 H 0.97006 * 119.99569 * 179.97438 * 8 7 5 27 27 H 0.96695 * 117.00238 * 179.72197 * 16 14 13 28 28 H 1.09004 * 110.31012 * 0.59371 * 17 13 3 29 29 H 1.09001 * 110.31413 * 122.75385 * 17 13 3 30 30 H 1.09003 * 110.72380 * 140.31366 * 18 17 13 31 31 H 1.08998 * 110.72032 * 263.41934 * 18 17 13 32 32 H 1.08996 * 110.66596 * 81.02185 * 19 18 17 33 33 H 1.09004 * 110.66394 * 204.15381 * 19 18 17 34 34 H 1.00901 * 110.99778 * 214.63034 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5768 1.9916 -0.8198 5 6 3.5367 1.4462 -0.1750 6 1 4.1705 1.8449 0.6033 7 6 4.0971 0.9406 -1.3290 8 7 3.3253 0.4548 -2.2766 9 14 5.9524 0.9458 -1.5463 10 1 6.5167 -0.3201 -1.0133 11 1 6.2813 1.0655 -2.9895 12 1 6.5339 2.0961 -0.8089 13 6 1.6803 2.1106 1.3287 14 6 0.1882 2.3012 1.4198 15 8 -0.4620 2.4681 0.4151 16 8 -0.4179 2.2911 2.6174 17 6 2.3909 3.4721 1.4406 18 6 3.3102 3.3473 2.6772 19 6 3.4892 1.8152 2.8227 20 7 2.1521 1.2807 2.4584 21 1 -0.3633 -1.0138 -0.1685 22 1 -0.3633 0.3609 0.9622 23 1 -0.3634 0.6527 -0.7937 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.7195 0.0995 -3.0886 27 1 -1.3760 2.4215 2.6257 28 1 2.9837 3.6641 0.5463 29 1 1.6617 4.2684 1.5901 30 1 4.2694 3.8321 2.4953 31 1 2.8284 3.7676 3.5600 32 1 4.2504 1.4496 2.1335 33 1 3.7413 1.5532 3.8503 34 1 1.5152 1.3370 3.2391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707964354.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = -85.629740 kcal Electronic energy + Delta-G solvation = -17379.159936 eV Core-core repulsion = 14698.044451 eV Total energy + Delta-G solvation = -2681.115485 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43890 -37.83281 -35.77372 -33.85350 -31.56061 -29.45254 -29.01500 -26.78842 -23.06633 -22.86240 -21.26782 -20.06951 -18.46904 -17.56285 -17.10813 -15.73487 -15.56944 -14.59969 -14.13764 -13.93395 -13.45696 -13.20537 -12.61367 -12.41044 -12.01250 -11.60642 -11.25188 -11.19438 -11.02311 -10.87318 -10.80026 -10.71675 -10.48396 -10.16491 -9.89211 -9.70469 -9.30121 -9.10768 -8.61782 -8.22288 -7.81994 -5.92505 -3.96572 2.79271 3.33282 3.39649 3.40585 3.53382 4.48168 4.80706 5.29912 5.38221 5.39266 5.52286 5.81330 5.96021 6.11889 6.26268 6.36490 6.40127 6.50127 6.56339 6.69996 6.72082 6.90423 6.92821 7.18807 7.24210 7.49527 7.65207 7.83780 7.98839 8.12749 8.21780 8.46130 8.51962 9.03697 9.64710 11.14308 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.012418 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.967521 B = 2254.259207 C = 2836.939675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C 0.080 3.920 4 H 0.041 0.959 5 C -0.505 4.505 6 H 0.069 0.931 7 C 0.061 3.939 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.128 3.872 14 C 0.481 3.519 15 O -0.507 6.507 16 O -0.529 6.529 17 C -0.130 4.130 18 C -0.152 4.152 19 C 0.041 3.959 20 N -0.644 5.644 21 H 0.025 0.975 22 H 0.023 0.977 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.259 0.741 27 H 0.398 0.602 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 3.632 9.481 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C 0.061 3.939 4 H 0.059 0.941 5 C -0.543 4.543 6 H 0.086 0.914 7 C -0.141 4.141 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.036 3.964 14 C 0.323 3.677 15 O -0.393 6.393 16 O -0.341 6.341 17 C -0.169 4.169 18 C -0.191 4.191 19 C -0.088 4.088 20 N -0.273 5.273 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.256 0.744 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.091 2.945 8.602 9.330 hybrid contribution -0.040 0.922 0.273 0.963 sum -2.131 3.867 8.875 9.913 Atomic orbital electron populations 1.22171 1.00022 0.98940 0.99116 1.21521 0.90907 0.99966 1.02646 1.18716 0.96245 0.92397 0.86527 0.94065 1.21255 0.90877 1.39995 1.02169 0.91361 1.24945 0.97448 0.95615 0.96049 1.69934 1.34335 1.40933 1.07330 0.86675 0.86301 0.78289 0.77170 1.20797 1.21484 1.20026 1.22182 0.82572 0.93443 0.98188 1.24127 0.92362 0.71182 0.80037 1.90689 1.66462 1.45257 1.36925 1.84525 1.28216 1.85294 1.36092 1.22808 0.98400 0.95137 1.00568 1.23051 0.99853 0.99034 0.97174 1.23403 0.93822 0.91280 1.00304 1.62782 1.03797 1.52381 1.08369 0.95598 0.95791 0.92697 0.89652 0.92890 0.93129 0.74435 0.87823 0.93315 0.91088 0.92618 0.87587 0.92064 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.21 37.16 0.31 -2.94 16 2 C -0.11 -2.76 5.15 -26.73 -0.14 -2.90 16 3 C 0.08 1.97 1.19 -91.77 -0.11 1.86 16 4 H 0.04 1.17 7.52 -51.93 -0.39 0.78 16 5 C -0.51 -12.93 6.60 -34.44 -0.23 -13.15 16 6 H 0.07 1.65 4.10 -52.49 -0.22 1.44 16 7 C 0.06 1.63 5.28 -17.82 -0.09 1.53 16 8 N -0.89 -25.20 11.49 55.43 0.64 -24.56 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.13 2.61 0.72 -131.68 -0.09 2.51 16 14 C 0.48 9.30 4.19 36.00 0.15 9.45 16 15 O -0.51 -11.16 14.03 -18.75 -0.26 -11.42 16 16 O -0.53 -7.92 12.07 -39.26 -0.47 -8.40 16 17 C -0.13 -2.41 5.58 -25.38 -0.14 -2.56 16 18 C -0.15 -2.37 6.91 -24.87 -0.17 -2.55 16 19 C 0.04 0.69 6.87 -1.90 -0.01 0.67 16 20 N -0.64 -11.94 5.81 -97.62 -0.57 -12.51 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.02 0.49 5.35 -51.93 -0.28 0.22 16 23 H 0.05 1.31 6.91 -51.93 -0.36 0.95 16 24 H 0.09 2.35 6.13 -51.93 -0.32 2.03 16 25 H 0.05 1.29 7.20 -51.93 -0.37 0.92 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.40 4.14 9.10 45.56 0.41 4.56 16 28 H 0.10 2.13 6.63 -51.93 -0.34 1.78 16 29 H 0.05 0.84 7.68 -51.93 -0.40 0.44 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.11 2.03 5.57 -51.93 -0.29 1.74 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.33 5.53 7.37 -39.29 -0.29 5.24 16 LS Contribution 259.40 15.07 3.91 3.91 Total: -1.00 -29.51 259.40 -5.98 -35.49 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -3.67 Total: 9.88 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -0.53 Total: -8.08 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.07 Total: -37.07 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.74 Total: -19.82 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.51 -5.98 -35.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707964354.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.141 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds