Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46575 * 2 1 4 4 H 1.08996 * 109.47425 * 307.08006 * 3 2 1 5 5 C 1.50700 * 109.46738 * 187.07560 * 3 2 1 6 6 H 1.08002 * 120.00590 * 242.50282 * 5 3 2 7 7 C 1.37889 * 119.99621 * 62.51167 * 5 3 2 8 8 N 1.31512 * 119.99706 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99739 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47287 * 89.99658 * 9 7 5 11 11 H 1.48500 * 109.46811 * 209.99856 * 9 7 5 12 12 H 1.48500 * 109.47134 * 329.99684 * 9 7 5 13 13 C 1.53002 * 109.47164 * 67.08267 * 3 2 1 14 14 C 1.50695 * 109.90551 * 291.45060 * 13 3 2 15 15 O 1.20829 * 120.00156 * 330.03946 * 14 13 3 16 16 O 1.34232 * 120.00386 * 150.31639 * 14 13 3 17 17 C 1.53986 * 109.92009 * 170.34484 * 13 3 2 18 18 C 1.54599 * 105.14147 * 241.67527 * 17 13 3 19 19 C 1.54938 * 102.92049 * 21.95700 * 18 17 13 20 20 N 1.47911 * 110.08067 * 52.65420 * 13 3 2 21 21 H 1.08999 * 109.46897 * 170.56507 * 1 2 3 22 22 H 1.08995 * 109.46915 * 290.55890 * 1 2 3 23 23 H 1.08999 * 109.47667 * 50.56624 * 1 2 3 24 24 H 1.09001 * 109.46586 * 240.00596 * 2 1 3 25 25 H 1.08997 * 109.46990 * 120.00323 * 2 1 3 26 26 H 0.97006 * 119.99569 * 179.97438 * 8 7 5 27 27 H 0.96695 * 117.00238 * 179.72197 * 16 14 13 28 28 H 1.09004 * 110.31012 * 0.59371 * 17 13 3 29 29 H 1.09001 * 110.31413 * 122.75385 * 17 13 3 30 30 H 1.09003 * 110.72380 * 140.31366 * 18 17 13 31 31 H 1.08998 * 110.72032 * 263.41934 * 18 17 13 32 32 H 1.08996 * 110.66596 * 81.02185 * 19 18 17 33 33 H 1.09004 * 110.66394 * 204.15381 * 19 18 17 34 34 H 1.00901 * 110.99778 * 214.63034 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5768 1.9916 -0.8198 5 6 3.5367 1.4462 -0.1750 6 1 4.1705 1.8449 0.6033 7 6 4.0971 0.9406 -1.3290 8 7 3.3253 0.4548 -2.2766 9 14 5.9524 0.9458 -1.5463 10 1 6.5167 -0.3201 -1.0133 11 1 6.2813 1.0655 -2.9895 12 1 6.5339 2.0961 -0.8089 13 6 1.6803 2.1106 1.3287 14 6 0.1882 2.3012 1.4198 15 8 -0.4620 2.4681 0.4151 16 8 -0.4179 2.2911 2.6174 17 6 2.3909 3.4721 1.4406 18 6 3.3102 3.3473 2.6772 19 6 3.4892 1.8152 2.8227 20 7 2.1521 1.2807 2.4584 21 1 -0.3633 -1.0138 -0.1685 22 1 -0.3633 0.3609 0.9622 23 1 -0.3634 0.6527 -0.7937 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.7195 0.0995 -3.0886 27 1 -1.3760 2.4215 2.6257 28 1 2.9837 3.6641 0.5463 29 1 1.6617 4.2684 1.5901 30 1 4.2694 3.8321 2.4953 31 1 2.8284 3.7676 3.5600 32 1 4.2504 1.4496 2.1335 33 1 3.7413 1.5532 3.8503 34 1 1.5152 1.3370 3.2391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707964354.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = -106.932575 kcal Electronic energy + Delta-G solvation = -17380.083696 eV Core-core repulsion = 14698.044451 eV Total energy + Delta-G solvation = -2682.039246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.97144 -39.31521 -37.21484 -35.68699 -33.51880 -30.94359 -30.55607 -28.66244 -24.94882 -24.35947 -22.86615 -21.57577 -20.17492 -19.13018 -18.63191 -17.57357 -17.14802 -16.38743 -15.67031 -15.39938 -14.99880 -14.83297 -14.47937 -13.98180 -13.58190 -13.25661 -13.03159 -12.92058 -12.75837 -12.53233 -12.38117 -12.32894 -12.07767 -11.79382 -11.59276 -11.44329 -11.10524 -10.90332 -10.52907 -10.27896 -9.29119 -7.97226 -6.06157 1.26704 1.47334 1.48140 1.56506 2.13049 2.53647 3.30744 3.40878 3.91907 3.99051 4.12941 4.41671 4.54646 4.60333 4.70843 4.77849 4.83842 4.96654 5.02088 5.13207 5.22876 5.24934 5.42579 5.46285 5.60438 5.65298 5.81962 5.91460 6.14302 6.15931 6.48473 6.70317 7.02527 7.11015 7.58416 9.09765 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.012418 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.967521 B = 2254.259207 C = 2836.939675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 C 0.081 3.919 4 H -0.008 1.008 5 C -0.502 4.502 6 H 0.084 0.916 7 C 0.004 3.996 8 N -0.925 5.925 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.260 1.260 13 C 0.125 3.875 14 C 0.487 3.513 15 O -0.541 6.541 16 O -0.509 6.509 17 C -0.133 4.133 18 C -0.139 4.139 19 C 0.040 3.960 20 N -0.653 5.653 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.254 0.746 27 H 0.423 0.577 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 4.228 12.246 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C 0.062 3.938 4 H 0.010 0.990 5 C -0.540 4.540 6 H 0.101 0.899 7 C -0.193 4.193 8 N -0.566 5.566 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.222 1.222 12 H -0.184 1.184 13 C 0.033 3.967 14 C 0.331 3.669 15 O -0.430 6.430 16 O -0.323 6.323 17 C -0.172 4.172 18 C -0.178 4.178 19 C -0.089 4.089 20 N -0.284 5.284 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.284 0.716 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.683 3.554 11.423 12.081 hybrid contribution -0.246 0.743 -0.526 0.943 sum -1.929 4.297 10.898 11.872 Atomic orbital electron populations 1.22001 0.98276 0.99424 0.99244 1.21363 0.92427 0.99732 1.00844 1.18495 0.95482 0.92040 0.87787 0.99021 1.21680 0.91843 1.38372 1.02116 0.89851 1.25757 1.01623 0.95821 0.96115 1.70110 1.36071 1.42595 1.07839 0.85682 0.81385 0.78690 0.76650 1.20547 1.22224 1.18371 1.21820 0.83962 0.94210 0.96730 1.23809 0.92013 0.70559 0.80553 1.90698 1.67094 1.46853 1.38373 1.84431 1.30329 1.84323 1.33240 1.22775 0.98885 0.94493 1.01035 1.23013 0.99889 0.98324 0.96568 1.23372 0.92028 0.91982 1.01519 1.62616 1.04918 1.52450 1.08387 0.94054 0.94061 0.94914 0.93212 0.92651 0.93663 0.71570 0.90699 0.92075 0.89989 0.89726 0.90383 0.88519 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.21 71.98 0.59 -5.34 16 2 C -0.11 -5.29 5.15 30.60 0.16 -5.14 16 3 C 0.08 4.07 1.19 -11.54 -0.01 4.06 16 4 H -0.01 -0.49 7.52 -2.39 -0.02 -0.51 16 5 C -0.50 -26.06 6.60 25.60 0.17 -25.89 16 6 H 0.08 4.00 4.10 -2.91 -0.01 3.99 16 7 C 0.00 0.22 5.28 84.66 0.45 0.66 16 8 N -0.93 -54.82 11.49 21.45 0.25 -54.57 16 9 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.13 4.96 0.72 2.92 0.00 4.96 16 14 C 0.49 18.10 4.19 71.23 0.30 18.40 16 15 O -0.54 -23.73 14.03 21.95 0.31 -23.42 16 16 O -0.51 -13.46 12.07 -51.44 -0.62 -14.08 16 17 C -0.13 -4.72 5.58 31.47 0.18 -4.55 16 18 C -0.14 -3.84 6.91 31.80 0.22 -3.62 16 19 C 0.04 1.20 6.87 86.65 0.60 1.80 16 20 N -0.65 -22.53 5.81 -462.78 -2.69 -25.22 16 21 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 22 H 0.04 1.67 5.35 -2.39 -0.01 1.66 16 23 H 0.03 1.59 6.91 -2.39 -0.02 1.57 16 24 H 0.05 2.85 6.13 -2.39 -0.01 2.83 16 25 H 0.05 2.70 7.20 -2.39 -0.02 2.68 16 26 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 27 H 0.42 7.17 9.10 -74.06 -0.67 6.50 16 28 H 0.07 3.08 6.63 -2.39 -0.02 3.06 16 29 H 0.06 1.99 7.68 -2.39 -0.02 1.97 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 2.83 5.57 -2.39 -0.01 2.81 16 33 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.34 10.22 7.37 -89.69 -0.66 9.55 16 Total: -1.00 -65.86 259.40 1.71 -64.15 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.20 Total: 22.74 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 2.64 Total: -14.66 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.44 Total: -79.79 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.31 Total: -37.50 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -65.86 1.71 -64.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707964354.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.787 kcal (2) G-P(sol) polarization free energy of solvation -65.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds