Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 H 1.09005 * 110.55397 * 56.42038 * 3 2 1 5 5 C 1.54996 * 110.61941 * 179.47620 * 3 2 1 6 6 C 1.54803 * 102.09146 * 155.52385 * 5 3 2 7 7 H 1.08998 * 110.60405 * 97.85319 * 6 5 3 8 8 N 1.46504 * 110.48824 * 220.44121 * 6 5 3 9 9 C 1.46499 * 119.99794 * 56.21939 * 8 6 5 10 10 C 1.34774 * 120.00240 * 236.22138 * 8 6 5 11 11 O 1.21691 * 119.99707 * 0.02562 * 10 8 6 12 12 C 1.46374 * 119.99951 * 179.97438 * 10 8 6 13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 8 14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 8 15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47341 * 180.02562 * 16 14 12 18 18 H 1.48510 * 109.46748 * 300.00101 * 16 14 12 19 19 H 1.48498 * 109.47206 * 59.99778 * 16 14 12 20 20 C 1.54098 * 104.19160 * 339.11699 * 6 5 3 21 21 O 1.43742 * 107.29110 * 357.97362 * 20 6 5 22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47072 * 300.00364 * 1 2 3 24 24 H 1.09003 * 109.46850 * 60.00252 * 1 2 3 25 25 H 1.08992 * 109.47474 * 239.99852 * 2 1 3 26 26 H 1.09004 * 109.47272 * 119.99421 * 2 1 3 27 27 H 1.08999 * 110.90910 * 37.32078 * 5 3 2 28 28 H 1.09007 * 110.90230 * 273.72115 * 5 3 2 29 29 H 1.09004 * 109.47522 * 270.00279 * 9 8 6 30 30 H 1.09003 * 109.47296 * 30.00377 * 9 8 6 31 31 H 1.09000 * 109.47462 * 150.00553 * 9 8 6 32 32 H 0.97001 * 119.99601 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.87948 * 117.39515 * 20 6 5 34 34 H 1.09000 * 109.88141 * 238.54800 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6353 1.9916 0.8503 5 6 3.5896 1.4736 0.0133 6 6 3.8916 2.8556 -0.6155 7 1 4.0868 3.5957 0.1605 8 7 5.0303 2.7638 -1.5328 9 6 4.9997 1.8113 -2.6454 10 6 6.1060 3.5557 -1.3530 11 8 6.1316 4.3466 -0.4285 12 6 7.2438 3.4635 -2.2692 13 1 7.2213 2.7614 -3.0893 14 6 8.3619 4.2860 -2.0821 15 7 8.3890 5.1360 -1.0899 16 14 9.8137 4.1690 -3.2516 17 1 10.8610 5.1376 -2.8390 18 1 10.3703 2.7927 -3.2134 19 1 9.3642 4.4831 -4.6316 20 6 2.6051 3.2091 -1.3866 21 8 1.7005 2.1018 -1.2388 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 4.0001 0.6700 -0.5981 28 1 3.9710 1.4185 1.0330 29 1 5.4186 0.8590 -2.3201 30 1 3.9693 1.6633 -2.9688 31 1 5.5883 2.2026 -3.4751 32 1 9.1635 5.7054 -0.9601 33 1 2.1583 4.1111 -0.9683 34 1 2.8351 3.3617 -2.4411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711133241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -88.928276 kcal Electronic energy + Delta-G solvation = -16276.693150 eV Core-core repulsion = 13595.434629 eV Total energy + Delta-G solvation = -2681.258521 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.54146 -37.20994 -34.04974 -33.35106 -32.47972 -30.49691 -27.94244 -26.08252 -25.47453 -23.45683 -21.21275 -20.78558 -18.72094 -16.83838 -16.12851 -15.71478 -15.51460 -14.94160 -14.22470 -13.88877 -13.65584 -13.51720 -12.95897 -12.62635 -12.32042 -11.75433 -11.59747 -11.39365 -11.35483 -11.25112 -11.13211 -10.93968 -10.79313 -10.60514 -10.32741 -10.19100 -10.17927 -9.39132 -8.87564 -7.63418 -7.25465 -6.22711 -4.68536 3.13648 3.18774 3.20425 4.03553 4.12791 4.48009 4.49405 4.87404 5.04116 5.19271 5.32589 5.37404 5.51380 5.67726 5.70278 5.76330 5.91305 5.94604 6.00964 6.03625 6.10991 6.24138 6.29121 6.33966 6.47956 6.53512 6.61365 7.20363 7.41599 7.58531 8.09945 8.31739 8.98627 9.37278 10.53227 10.71838 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.060522 B = 0.006094 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.532358 B = 4593.470900 C = 4744.939606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.066 0.934 5 C -0.161 4.161 6 C 0.120 3.880 7 H 0.104 0.896 8 N -0.638 5.638 9 C 0.100 3.900 10 C 0.555 3.445 11 O -0.579 6.579 12 C -0.542 4.542 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.767 5.767 16 Si 0.908 3.092 17 H -0.280 1.280 18 H -0.268 1.268 19 H -0.267 1.267 20 C 0.036 3.964 21 O -0.377 6.377 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.072 0.928 32 H 0.269 0.731 33 H 0.057 0.943 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 -8.214 -0.329 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.018 3.982 4 H 0.084 0.916 5 C -0.199 4.199 6 C 0.013 3.987 7 H 0.122 0.878 8 N -0.376 5.376 9 C -0.044 4.044 10 C 0.362 3.638 11 O -0.462 6.462 12 C -0.579 4.579 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.395 5.395 16 Si 0.732 3.268 17 H -0.205 1.205 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.042 4.042 21 O -0.297 6.297 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.792 -7.675 0.130 12.442 hybrid contribution 0.907 -0.039 -0.492 1.033 sum -8.884 -7.714 -0.361 11.771 Atomic orbital electron populations 1.21715 0.95567 1.01141 1.02188 1.21537 0.96356 0.94822 1.02557 1.23115 0.93933 0.93500 0.87700 0.91605 1.23520 0.95038 0.99338 1.02053 1.21957 0.86745 0.96488 0.93482 0.87759 1.47964 1.17707 1.42242 1.29642 1.21376 1.00010 0.92380 0.90677 1.18304 0.81030 0.79039 0.85441 1.90586 1.80753 1.39941 1.34889 1.20973 1.00346 1.22984 1.13586 0.90925 1.25749 0.98973 0.93679 0.94890 1.70014 1.28105 1.16003 1.25410 0.86431 0.80637 0.78723 0.80977 1.20528 1.19242 1.19215 1.23639 0.89652 0.89037 1.01900 1.88811 1.56388 1.44232 1.40250 0.93060 0.93012 0.92061 0.91223 0.90929 0.90191 0.90527 0.95114 0.93528 0.90937 0.92008 0.92511 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.83 37.16 0.37 -1.19 16 2 C -0.12 -1.34 5.71 -26.73 -0.15 -1.49 16 3 C 0.08 1.07 3.33 -25.67 -0.09 0.98 16 4 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 5 C -0.16 -2.61 6.17 -24.73 -0.15 -2.76 16 6 C 0.12 2.36 3.46 -66.41 -0.23 2.14 16 7 H 0.10 2.32 6.97 -51.93 -0.36 1.96 16 8 N -0.64 -14.53 2.79 -173.85 -0.49 -15.02 16 9 C 0.10 1.89 8.79 59.85 0.53 2.42 16 10 C 0.56 15.78 7.61 -12.99 -0.10 15.68 16 11 O -0.58 -18.60 14.38 5.20 0.07 -18.52 16 12 C -0.54 -15.16 8.74 -35.63 -0.31 -15.47 16 13 H 0.07 1.85 6.00 -52.49 -0.31 1.54 16 14 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 15 N -0.77 -22.83 11.83 55.55 0.66 -22.18 16 16 Si 0.91 19.95 29.56 -169.99 -5.02 14.93 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 20 C 0.04 0.62 6.84 37.73 0.26 0.88 16 21 O -0.38 -6.16 10.89 -35.23 -0.38 -6.54 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.31 6.82 -51.93 -0.35 0.95 16 28 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 29 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 30 H 0.05 0.78 6.90 -51.93 -0.36 0.42 16 31 H 0.07 1.40 6.09 -51.93 -0.32 1.09 16 32 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.55 7.07 -51.93 -0.37 1.18 16 LS Contribution 277.69 15.07 4.18 4.18 Total: -1.00 -32.85 277.69 -5.94 -38.80 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.99 Total: 0.87 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 0.02 Total: 3.49 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.17 Total: -37.19 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.31 Total: -25.07 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.85 -5.94 -38.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711133241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.133 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds