Wall clock time and date at job start Mon Mar 30 2020 02:55:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53007 * 109.47131 * 2 1
4 4 H 1.09005 * 110.55397 * 56.42038 * 3 2 1
5 5 C 1.54996 * 110.61941 * 179.47620 * 3 2 1
6 6 C 1.54803 * 102.09146 * 155.52385 * 5 3 2
7 7 H 1.08998 * 110.60405 * 97.85319 * 6 5 3
8 8 N 1.46504 * 110.48824 * 220.44121 * 6 5 3
9 9 C 1.46499 * 119.99794 * 56.21939 * 8 6 5
10 10 C 1.34774 * 120.00240 * 236.22138 * 8 6 5
11 11 O 1.21691 * 119.99707 * 0.02562 * 10 8 6
12 12 C 1.46374 * 119.99951 * 179.97438 * 10 8 6
13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 8
14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 8
15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10
16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10
17 17 H 1.48496 * 109.47341 * 180.02562 * 16 14 12
18 18 H 1.48510 * 109.46748 * 300.00101 * 16 14 12
19 19 H 1.48498 * 109.47206 * 59.99778 * 16 14 12
20 20 C 1.54098 * 104.19160 * 339.11699 * 6 5 3
21 21 O 1.43742 * 107.29110 * 357.97362 * 20 6 5
22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.47072 * 300.00364 * 1 2 3
24 24 H 1.09003 * 109.46850 * 60.00252 * 1 2 3
25 25 H 1.08992 * 109.47474 * 239.99852 * 2 1 3
26 26 H 1.09004 * 109.47272 * 119.99421 * 2 1 3
27 27 H 1.08999 * 110.90910 * 37.32078 * 5 3 2
28 28 H 1.09007 * 110.90230 * 273.72115 * 5 3 2
29 29 H 1.09004 * 109.47522 * 270.00279 * 9 8 6
30 30 H 1.09003 * 109.47296 * 30.00377 * 9 8 6
31 31 H 1.09000 * 109.47462 * 150.00553 * 9 8 6
32 32 H 0.97001 * 119.99601 * 179.97438 * 15 14 12
33 33 H 1.09003 * 109.87948 * 117.39515 * 20 6 5
34 34 H 1.09000 * 109.88141 * 238.54800 * 20 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6353 1.9916 0.8503
5 6 3.5896 1.4736 0.0133
6 6 3.8916 2.8556 -0.6155
7 1 4.0868 3.5957 0.1605
8 7 5.0303 2.7638 -1.5328
9 6 4.9997 1.8113 -2.6454
10 6 6.1060 3.5557 -1.3530
11 8 6.1316 4.3466 -0.4285
12 6 7.2438 3.4635 -2.2692
13 1 7.2213 2.7614 -3.0893
14 6 8.3619 4.2860 -2.0821
15 7 8.3890 5.1360 -1.0899
16 14 9.8137 4.1690 -3.2516
17 1 10.8610 5.1376 -2.8390
18 1 10.3703 2.7927 -3.2134
19 1 9.3642 4.4831 -4.6316
20 6 2.6051 3.2091 -1.3866
21 8 1.7005 2.1018 -1.2388
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 1.8934 -0.5138 -0.8899
26 1 1.8934 -0.5138 0.8901
27 1 4.0001 0.6700 -0.5981
28 1 3.9710 1.4185 1.0330
29 1 5.4186 0.8590 -2.3201
30 1 3.9693 1.6633 -2.9688
31 1 5.5883 2.2026 -3.4751
32 1 9.1635 5.7054 -0.9601
33 1 2.1583 4.1111 -0.9683
34 1 2.8351 3.3617 -2.4411
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000711133241.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:33
Heat of formation + Delta-G solvation = -111.634455 kcal
Electronic energy + Delta-G solvation = -16277.677764 eV
Core-core repulsion = 13595.434629 eV
Total energy + Delta-G solvation = -2682.243134 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 227.131 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.99997 -39.09763 -35.84739 -34.62329 -34.44211 -32.00188 -29.26820 -28.09194
-27.15713 -24.58130 -22.94783 -21.92361 -20.46215 -18.62312 -17.94569 -17.29065
-17.01203 -16.47190 -15.93815 -15.57869 -15.12755 -14.52826 -14.20946 -14.15928
-13.92416 -13.38533 -13.27859 -13.11703 -12.79367 -12.73812 -12.54253 -12.36594
-12.22494 -12.07311 -12.01182 -11.72306 -11.51231 -10.92677 -10.68999 -9.82541
-9.11126 -8.30256 -6.86457 1.39997 1.42989 1.54829 2.22729 2.42937
2.70034 2.91679 3.48794 3.76902 3.81674 3.97286 4.11078 4.20834
4.32555 4.43894 4.51056 4.59859 4.70835 4.79225 4.81254 4.93743
5.00920 5.03748 5.11872 5.12954 5.27279 5.35683 5.46640 5.70034
5.92653 6.11145 6.37714 6.86026 7.36854 8.43605 8.65091
Molecular weight = 227.13amu
Principal moments of inertia in cm(-1)
A = 0.060522 B = 0.006094 C = 0.005900
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 462.532358 B = 4593.470900 C = 4744.939606
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.112 4.112
3 C 0.078 3.922
4 H 0.075 0.925
5 C -0.152 4.152
6 C 0.109 3.891
7 H 0.069 0.931
8 N -0.639 5.639
9 C 0.101 3.899
10 C 0.537 3.463
11 O -0.632 6.632
12 C -0.568 4.568
13 H 0.094 0.906
14 C 0.029 3.971
15 N -0.821 5.821
16 Si 0.996 3.004
17 H -0.275 1.275
18 H -0.254 1.254
19 H -0.253 1.253
20 C 0.047 3.953
21 O -0.379 6.379
22 H 0.069 0.931
23 H 0.057 0.943
24 H 0.047 0.953
25 H 0.068 0.932
26 H 0.091 0.909
27 H 0.083 0.917
28 H 0.079 0.921
29 H 0.044 0.956
30 H 0.071 0.929
31 H 0.067 0.933
32 H 0.274 0.726
33 H 0.063 0.937
34 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.093 -10.085 -1.537 14.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.149 4.149
3 C 0.020 3.980
4 H 0.093 0.907
5 C -0.191 4.191
6 C 0.004 3.996
7 H 0.088 0.912
8 N -0.375 5.375
9 C -0.042 4.042
10 C 0.344 3.656
11 O -0.519 6.519
12 C -0.604 4.604
13 H 0.112 0.888
14 C -0.186 4.186
15 N -0.451 5.451
16 Si 0.815 3.185
17 H -0.200 1.200
18 H -0.178 1.178
19 H -0.177 1.177
20 C -0.031 4.031
21 O -0.298 6.298
22 H 0.088 0.912
23 H 0.076 0.924
24 H 0.066 0.934
25 H 0.086 0.914
26 H 0.110 0.890
27 H 0.102 0.898
28 H 0.097 0.903
29 H 0.063 0.937
30 H 0.090 0.910
31 H 0.086 0.914
32 H 0.084 0.916
33 H 0.081 0.919
34 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -10.181 -9.600 -1.097 14.036
hybrid contribution 0.921 0.511 -0.069 1.055
sum -9.260 -9.089 -1.167 13.028
Atomic orbital electron populations
1.21693 0.94529 1.02279 1.01854 1.21565 0.97205 0.92698 1.03451
1.23292 0.92206 0.95317 0.87163 0.90674 1.23455 0.96902 0.96873
1.01844 1.22097 0.86793 0.97959 0.92800 0.91244 1.47806 1.17150
1.41761 1.30781 1.21503 1.01677 0.91812 0.89240 1.18708 0.82633
0.79210 0.85069 1.90536 1.82232 1.42307 1.36846 1.21510 1.00868
1.23822 1.14240 0.88826 1.27008 1.02439 0.92556 0.96631 1.70191
1.29565 1.17314 1.27987 0.85093 0.75769 0.79330 0.78273 1.20005
1.17769 1.17726 1.23407 0.88646 0.89804 1.01220 1.88819 1.55792
1.43829 1.41384 0.91239 0.92392 0.93366 0.91361 0.89035 0.89848
0.90272 0.93701 0.91021 0.91423 0.91590 0.91925 0.89842
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.63 9.83 71.98 0.71 -1.92 16
2 C -0.11 -2.27 5.71 30.60 0.17 -2.09 16
3 C 0.08 2.04 3.33 31.28 0.10 2.15 16
4 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16
5 C -0.15 -4.79 6.17 31.89 0.20 -4.59 16
6 C 0.11 4.37 3.46 45.98 0.16 4.53 16
7 H 0.07 3.26 6.97 -2.39 -0.02 3.24 16
8 N -0.64 -29.37 2.79 -822.15 -2.30 -31.66 16
9 C 0.10 3.67 8.79 127.77 1.12 4.80 16
10 C 0.54 31.42 7.61 86.36 0.66 32.07 16
11 O -0.63 -42.60 14.38 -4.32 -0.06 -42.66 16
12 C -0.57 -32.03 8.74 24.83 0.22 -31.82 16
13 H 0.09 4.69 6.00 -2.92 -0.02 4.68 16
14 C 0.03 1.61 5.50 85.31 0.47 2.08 16
15 N -0.82 -50.32 11.83 21.84 0.26 -50.06 16
16 Si 1.00 40.63 29.56 68.60 2.03 42.65 16
17 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16
18 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16
19 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16
20 C 0.05 1.63 6.84 72.35 0.49 2.12 16
21 O -0.38 -11.68 10.89 -148.98 -1.62 -13.30 16
22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
24 H 0.05 0.99 7.92 -2.39 -0.02 0.97 16
25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16
27 H 0.08 2.57 6.82 -2.39 -0.02 2.56 16
28 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16
29 H 0.04 1.52 7.88 -2.38 -0.02 1.50 16
30 H 0.07 2.25 6.90 -2.39 -0.02 2.23 16
31 H 0.07 2.53 6.09 -2.39 -0.01 2.52 16
32 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16
33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
34 H 0.08 2.92 7.07 -2.39 -0.02 2.90 16
Total: -1.00 -73.30 277.69 3.69 -69.61
By element:
Atomic # 1 Polarization: 17.03 SS G_CDS: 1.08 Total: 18.11 kcal
Atomic # 6 Polarization: 3.01 SS G_CDS: 4.30 Total: 7.32 kcal
Atomic # 7 Polarization: -79.69 SS G_CDS: -2.04 Total: -81.73 kcal
Atomic # 8 Polarization: -54.28 SS G_CDS: -1.68 Total: -55.96 kcal
Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal
Total: -73.30 3.69 -69.61 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000711133241.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.021 kcal
(2) G-P(sol) polarization free energy of solvation -73.301 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.322 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.634 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds