Wall clock time and date at job start Mon Mar 30 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47131 * 2 1 4 4 H 1.09005 * 110.55397 * 56.42038 * 3 2 1 5 5 C 1.54996 * 110.61941 * 179.47620 * 3 2 1 6 6 C 1.54803 * 102.09146 * 155.52385 * 5 3 2 7 7 H 1.08998 * 110.60405 * 97.85319 * 6 5 3 8 8 N 1.46504 * 110.48824 * 220.44121 * 6 5 3 9 9 C 1.46499 * 119.99794 * 56.21939 * 8 6 5 10 10 C 1.34774 * 120.00240 * 236.22138 * 8 6 5 11 11 O 1.21691 * 119.99707 * 0.02562 * 10 8 6 12 12 C 1.46374 * 119.99951 * 179.97438 * 10 8 6 13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 8 14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 8 15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47341 * 180.02562 * 16 14 12 18 18 H 1.48510 * 109.46748 * 300.00101 * 16 14 12 19 19 H 1.48498 * 109.47206 * 59.99778 * 16 14 12 20 20 C 1.54098 * 104.19160 * 339.11699 * 6 5 3 21 21 O 1.43742 * 107.29110 * 357.97362 * 20 6 5 22 22 H 1.08999 * 109.47053 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47072 * 300.00364 * 1 2 3 24 24 H 1.09003 * 109.46850 * 60.00252 * 1 2 3 25 25 H 1.08992 * 109.47474 * 239.99852 * 2 1 3 26 26 H 1.09004 * 109.47272 * 119.99421 * 2 1 3 27 27 H 1.08999 * 110.90910 * 37.32078 * 5 3 2 28 28 H 1.09007 * 110.90230 * 273.72115 * 5 3 2 29 29 H 1.09004 * 109.47522 * 270.00279 * 9 8 6 30 30 H 1.09003 * 109.47296 * 30.00377 * 9 8 6 31 31 H 1.09000 * 109.47462 * 150.00553 * 9 8 6 32 32 H 0.97001 * 119.99601 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.87948 * 117.39515 * 20 6 5 34 34 H 1.09000 * 109.88141 * 238.54800 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6353 1.9916 0.8503 5 6 3.5896 1.4736 0.0133 6 6 3.8916 2.8556 -0.6155 7 1 4.0868 3.5957 0.1605 8 7 5.0303 2.7638 -1.5328 9 6 4.9997 1.8113 -2.6454 10 6 6.1060 3.5557 -1.3530 11 8 6.1316 4.3466 -0.4285 12 6 7.2438 3.4635 -2.2692 13 1 7.2213 2.7614 -3.0893 14 6 8.3619 4.2860 -2.0821 15 7 8.3890 5.1360 -1.0899 16 14 9.8137 4.1690 -3.2516 17 1 10.8610 5.1376 -2.8390 18 1 10.3703 2.7927 -3.2134 19 1 9.3642 4.4831 -4.6316 20 6 2.6051 3.2091 -1.3866 21 8 1.7005 2.1018 -1.2388 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8901 27 1 4.0001 0.6700 -0.5981 28 1 3.9710 1.4185 1.0330 29 1 5.4186 0.8590 -2.3201 30 1 3.9693 1.6633 -2.9688 31 1 5.5883 2.2026 -3.4751 32 1 9.1635 5.7054 -0.9601 33 1 2.1583 4.1111 -0.9683 34 1 2.8351 3.3617 -2.4411 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711133241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:33 Heat of formation + Delta-G solvation = -111.634455 kcal Electronic energy + Delta-G solvation = -16277.677764 eV Core-core repulsion = 13595.434629 eV Total energy + Delta-G solvation = -2682.243134 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99997 -39.09763 -35.84739 -34.62329 -34.44211 -32.00188 -29.26820 -28.09194 -27.15713 -24.58130 -22.94783 -21.92361 -20.46215 -18.62312 -17.94569 -17.29065 -17.01203 -16.47190 -15.93815 -15.57869 -15.12755 -14.52826 -14.20946 -14.15928 -13.92416 -13.38533 -13.27859 -13.11703 -12.79367 -12.73812 -12.54253 -12.36594 -12.22494 -12.07311 -12.01182 -11.72306 -11.51231 -10.92677 -10.68999 -9.82541 -9.11126 -8.30256 -6.86457 1.39997 1.42989 1.54829 2.22729 2.42937 2.70034 2.91679 3.48794 3.76902 3.81674 3.97286 4.11078 4.20834 4.32555 4.43894 4.51056 4.59859 4.70835 4.79225 4.81254 4.93743 5.00920 5.03748 5.11872 5.12954 5.27279 5.35683 5.46640 5.70034 5.92653 6.11145 6.37714 6.86026 7.36854 8.43605 8.65091 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.060522 B = 0.006094 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.532358 B = 4593.470900 C = 4744.939606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.152 4.152 6 C 0.109 3.891 7 H 0.069 0.931 8 N -0.639 5.639 9 C 0.101 3.899 10 C 0.537 3.463 11 O -0.632 6.632 12 C -0.568 4.568 13 H 0.094 0.906 14 C 0.029 3.971 15 N -0.821 5.821 16 Si 0.996 3.004 17 H -0.275 1.275 18 H -0.254 1.254 19 H -0.253 1.253 20 C 0.047 3.953 21 O -0.379 6.379 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.274 0.726 33 H 0.063 0.937 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.093 -10.085 -1.537 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.020 3.980 4 H 0.093 0.907 5 C -0.191 4.191 6 C 0.004 3.996 7 H 0.088 0.912 8 N -0.375 5.375 9 C -0.042 4.042 10 C 0.344 3.656 11 O -0.519 6.519 12 C -0.604 4.604 13 H 0.112 0.888 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.815 3.185 17 H -0.200 1.200 18 H -0.178 1.178 19 H -0.177 1.177 20 C -0.031 4.031 21 O -0.298 6.298 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.181 -9.600 -1.097 14.036 hybrid contribution 0.921 0.511 -0.069 1.055 sum -9.260 -9.089 -1.167 13.028 Atomic orbital electron populations 1.21693 0.94529 1.02279 1.01854 1.21565 0.97205 0.92698 1.03451 1.23292 0.92206 0.95317 0.87163 0.90674 1.23455 0.96902 0.96873 1.01844 1.22097 0.86793 0.97959 0.92800 0.91244 1.47806 1.17150 1.41761 1.30781 1.21503 1.01677 0.91812 0.89240 1.18708 0.82633 0.79210 0.85069 1.90536 1.82232 1.42307 1.36846 1.21510 1.00868 1.23822 1.14240 0.88826 1.27008 1.02439 0.92556 0.96631 1.70191 1.29565 1.17314 1.27987 0.85093 0.75769 0.79330 0.78273 1.20005 1.17769 1.17726 1.23407 0.88646 0.89804 1.01220 1.88819 1.55792 1.43829 1.41384 0.91239 0.92392 0.93366 0.91361 0.89035 0.89848 0.90272 0.93701 0.91021 0.91423 0.91590 0.91925 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.83 71.98 0.71 -1.92 16 2 C -0.11 -2.27 5.71 30.60 0.17 -2.09 16 3 C 0.08 2.04 3.33 31.28 0.10 2.15 16 4 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 5 C -0.15 -4.79 6.17 31.89 0.20 -4.59 16 6 C 0.11 4.37 3.46 45.98 0.16 4.53 16 7 H 0.07 3.26 6.97 -2.39 -0.02 3.24 16 8 N -0.64 -29.37 2.79 -822.15 -2.30 -31.66 16 9 C 0.10 3.67 8.79 127.77 1.12 4.80 16 10 C 0.54 31.42 7.61 86.36 0.66 32.07 16 11 O -0.63 -42.60 14.38 -4.32 -0.06 -42.66 16 12 C -0.57 -32.03 8.74 24.83 0.22 -31.82 16 13 H 0.09 4.69 6.00 -2.92 -0.02 4.68 16 14 C 0.03 1.61 5.50 85.31 0.47 2.08 16 15 N -0.82 -50.32 11.83 21.84 0.26 -50.06 16 16 Si 1.00 40.63 29.56 68.60 2.03 42.65 16 17 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 20 C 0.05 1.63 6.84 72.35 0.49 2.12 16 21 O -0.38 -11.68 10.89 -148.98 -1.62 -13.30 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 0.99 7.92 -2.39 -0.02 0.97 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.08 2.57 6.82 -2.39 -0.02 2.56 16 28 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 29 H 0.04 1.52 7.88 -2.38 -0.02 1.50 16 30 H 0.07 2.25 6.90 -2.39 -0.02 2.23 16 31 H 0.07 2.53 6.09 -2.39 -0.01 2.52 16 32 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.92 7.07 -2.39 -0.02 2.90 16 Total: -1.00 -73.30 277.69 3.69 -69.61 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.08 Total: 18.11 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 4.30 Total: 7.32 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.04 Total: -81.73 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -1.68 Total: -55.96 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.65 kcal Total: -73.30 3.69 -69.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711133241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.021 kcal (2) G-P(sol) polarization free energy of solvation -73.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds