Wall clock time and date at job start Mon Mar 30 2020 03:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.43241 * 2 1 4 4 C 1.54094 * 110.48899 * 122.69274 * 2 1 3 5 5 O 1.43741 * 107.29615 * 116.64707 * 4 2 1 6 6 C 1.44386 * 106.97354 * 26.51392 * 5 4 2 7 7 H 1.09002 * 110.62070 * 78.43878 * 6 5 4 8 8 C 1.50697 * 110.75235 * 201.37386 * 6 5 4 9 9 O 1.21279 * 120.00140 * 1.32505 * 8 6 5 10 10 N 1.34771 * 120.00229 * 181.32707 * 8 6 5 11 11 C 1.46499 * 120.00362 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47462 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47330 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00171 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99986 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99776 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99852 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47249 * 119.99880 * 17 15 13 20 20 H 1.48509 * 109.46996 * 239.99799 * 17 15 13 21 21 C 1.54809 * 110.48662 * 237.46173 * 2 1 3 22 22 H 1.08998 * 109.46531 * 182.53996 * 1 2 3 23 23 H 1.08992 * 109.47261 * 302.53890 * 1 2 3 24 24 H 1.09000 * 109.47297 * 62.54392 * 1 2 3 25 25 H 1.09002 * 109.87777 * 236.07438 * 4 2 1 26 26 H 1.09002 * 109.88106 * 357.07208 * 4 2 1 27 27 H 0.97000 * 119.99928 * 359.97438 * 10 8 6 28 28 H 1.08999 * 109.47032 * 299.99879 * 11 10 8 29 29 H 1.09006 * 109.47471 * 59.99736 * 11 10 8 30 30 H 1.08999 * 109.47093 * 300.00080 * 12 11 10 31 31 H 1.09005 * 109.47274 * 59.99800 * 12 11 10 32 32 H 0.97005 * 119.99886 * 180.02562 * 16 15 13 33 33 H 1.08995 * 110.91120 * 102.24383 * 21 2 1 34 34 H 1.08997 * 110.91039 * 338.63556 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0694 -0.7797 1.2148 5 8 2.7956 -1.9118 0.7078 6 6 3.2661 -1.5552 -0.6098 7 1 4.1457 -0.9149 -0.5431 8 6 3.5699 -2.7888 -1.4203 9 8 3.3837 -3.8885 -0.9440 10 7 4.0487 -2.6701 -2.6745 11 6 4.3435 -3.8693 -3.4627 12 6 4.8696 -3.4583 -4.8393 13 6 5.1735 -4.6919 -5.6498 14 1 5.0076 -5.6711 -5.2256 15 6 5.6634 -4.5704 -6.9329 16 7 5.8659 -3.3779 -7.4492 17 14 6.0395 -6.0995 -7.9378 18 1 5.7280 -7.3089 -7.1342 19 1 5.2120 -6.0974 -9.1708 20 1 7.4779 -6.1079 -8.3069 21 6 2.0719 -0.7800 -1.2225 22 1 -0.3632 -1.0267 0.0455 23 1 -0.3633 0.5527 0.8663 24 1 -0.3634 0.4738 -0.9119 25 1 2.7351 -0.1432 1.7979 26 1 1.2402 -1.1167 1.8369 27 1 4.1973 -1.7906 -3.0557 28 1 5.0972 -4.4657 -2.9485 29 1 3.4340 -4.4581 -3.5826 30 1 4.1156 -2.8621 -5.3533 31 1 5.7791 -2.8694 -4.7198 32 1 6.2102 -3.2924 -8.3521 33 1 2.4103 -0.0965 -2.0012 34 1 1.3198 -1.4672 -1.6100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718501144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:24 Heat of formation + Delta-G solvation = -103.013293 kcal Electronic energy + Delta-G solvation = -15538.416365 eV Core-core repulsion = 12856.547072 eV Total energy + Delta-G solvation = -2681.869293 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19125 -38.32914 -34.87469 -33.67956 -32.87335 -30.84415 -29.10915 -26.52196 -25.08273 -23.41572 -21.05168 -20.65656 -19.97570 -17.32178 -16.77620 -16.37976 -15.49950 -15.06923 -14.95719 -14.51333 -14.19359 -13.97204 -13.38899 -12.89536 -12.78860 -12.68551 -12.30766 -11.78465 -11.38971 -11.20988 -11.16907 -11.04677 -10.97217 -10.63179 -10.34911 -9.88345 -9.72724 -9.41179 -9.12314 -8.56325 -8.37104 -6.10727 -4.13359 2.92398 3.22790 3.28010 3.35893 3.41635 4.04640 4.29206 4.41553 4.52747 4.71248 4.91509 4.98381 5.13051 5.24140 5.26651 5.41592 5.45211 5.52943 5.67632 5.75873 5.81216 6.00326 6.30644 6.33766 6.69189 6.72778 6.89692 7.50542 7.59896 7.87813 7.97977 8.26712 8.63206 8.92901 9.51688 11.00941 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.004552 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.201215 B = 6149.347464 C = 6391.767039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 H 0.086 0.914 4 C 0.047 3.953 5 O -0.348 6.348 6 C 0.058 3.942 7 H 0.094 0.906 8 C 0.510 3.490 9 O -0.531 6.531 10 N -0.719 5.719 11 C 0.122 3.878 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.141 4.141 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.397 0.603 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.761 10.252 12.595 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.030 4.030 5 O -0.266 6.266 6 C -0.003 4.003 7 H 0.111 0.889 8 C 0.294 3.706 9 O -0.407 6.407 10 N -0.371 5.371 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.179 4.179 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.231 0.769 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.800 9.309 12.894 17.713 hybrid contribution 0.328 -0.022 -0.934 0.990 sum -7.472 9.286 11.960 16.885 Atomic orbital electron populations 1.21829 0.93758 1.02476 1.02051 1.22544 0.97315 1.00024 0.94637 0.89577 1.23327 0.95861 0.88000 0.95848 1.89020 1.71857 1.36629 1.29061 1.23022 0.98139 0.94591 0.84551 0.88889 1.20086 0.78097 0.90044 0.82345 1.90698 1.51883 1.27584 1.70534 1.46232 1.65379 1.11470 1.13970 1.21751 0.99821 0.85315 0.93067 1.19333 0.96565 0.97793 0.88817 1.21095 1.43567 0.92643 0.98673 0.92160 1.24994 0.95355 0.96172 0.97753 1.69964 1.45418 1.22099 1.15863 0.86456 0.77962 0.83143 0.80012 1.19555 1.20928 1.20924 1.23212 0.97380 0.99181 0.98086 0.92054 0.92340 0.92115 0.92251 0.89520 0.76910 0.92448 0.92486 0.95894 0.95881 0.92899 0.89175 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.92 37.16 0.33 -0.77 16 2 C -0.13 -1.09 3.64 -89.09 -0.32 -1.42 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 4 C 0.05 0.48 7.37 37.73 0.28 0.76 16 5 O -0.35 -5.26 10.81 -54.21 -0.59 -5.85 16 6 C 0.06 0.79 3.76 -26.83 -0.10 0.69 16 7 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.51 9.16 7.20 -10.99 -0.08 9.08 16 9 O -0.53 -11.99 16.57 -13.42 -0.22 -12.21 16 10 N -0.72 -12.58 5.56 -60.30 -0.33 -12.92 16 11 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 12 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 13 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.14 -1.49 6.13 -24.72 -0.15 -1.64 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 27 H 0.40 5.82 8.47 -40.82 -0.35 5.47 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.02 7.78 -51.93 -0.40 0.62 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -32.87 288.93 -7.04 -39.91 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.34 Total: -0.61 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.62 Total: -3.75 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.17 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.81 Total: -18.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.87 -7.04 -39.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718501144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.102 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds