Wall clock time and date at job start Mon Mar 30 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.43241 * 2 1 4 4 C 1.54094 * 110.48899 * 122.69274 * 2 1 3 5 5 O 1.43741 * 107.29615 * 116.64707 * 4 2 1 6 6 C 1.44386 * 106.97354 * 26.51392 * 5 4 2 7 7 H 1.09002 * 110.62070 * 78.43878 * 6 5 4 8 8 C 1.50697 * 110.75235 * 201.37386 * 6 5 4 9 9 O 1.21279 * 120.00140 * 1.32505 * 8 6 5 10 10 N 1.34771 * 120.00229 * 181.32707 * 8 6 5 11 11 C 1.46499 * 120.00362 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47462 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47330 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00171 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99986 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99776 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99852 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47249 * 119.99880 * 17 15 13 20 20 H 1.48509 * 109.46996 * 239.99799 * 17 15 13 21 21 C 1.54809 * 110.48662 * 237.46173 * 2 1 3 22 22 H 1.08998 * 109.46531 * 182.53996 * 1 2 3 23 23 H 1.08992 * 109.47261 * 302.53890 * 1 2 3 24 24 H 1.09000 * 109.47297 * 62.54392 * 1 2 3 25 25 H 1.09002 * 109.87777 * 236.07438 * 4 2 1 26 26 H 1.09002 * 109.88106 * 357.07208 * 4 2 1 27 27 H 0.97000 * 119.99928 * 359.97438 * 10 8 6 28 28 H 1.08999 * 109.47032 * 299.99879 * 11 10 8 29 29 H 1.09006 * 109.47471 * 59.99736 * 11 10 8 30 30 H 1.08999 * 109.47093 * 300.00080 * 12 11 10 31 31 H 1.09005 * 109.47274 * 59.99800 * 12 11 10 32 32 H 0.97005 * 119.99886 * 180.02562 * 16 15 13 33 33 H 1.08995 * 110.91120 * 102.24383 * 21 2 1 34 34 H 1.08997 * 110.91039 * 338.63556 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0694 -0.7797 1.2148 5 8 2.7956 -1.9118 0.7078 6 6 3.2661 -1.5552 -0.6098 7 1 4.1457 -0.9149 -0.5431 8 6 3.5699 -2.7888 -1.4203 9 8 3.3837 -3.8885 -0.9440 10 7 4.0487 -2.6701 -2.6745 11 6 4.3435 -3.8693 -3.4627 12 6 4.8696 -3.4583 -4.8393 13 6 5.1735 -4.6919 -5.6498 14 1 5.0076 -5.6711 -5.2256 15 6 5.6634 -4.5704 -6.9329 16 7 5.8659 -3.3779 -7.4492 17 14 6.0395 -6.0995 -7.9378 18 1 5.7280 -7.3089 -7.1342 19 1 5.2120 -6.0974 -9.1708 20 1 7.4779 -6.1079 -8.3069 21 6 2.0719 -0.7800 -1.2225 22 1 -0.3632 -1.0267 0.0455 23 1 -0.3633 0.5527 0.8663 24 1 -0.3634 0.4738 -0.9119 25 1 2.7351 -0.1432 1.7979 26 1 1.2402 -1.1167 1.8369 27 1 4.1973 -1.7906 -3.0557 28 1 5.0972 -4.4657 -2.9485 29 1 3.4340 -4.4581 -3.5826 30 1 4.1156 -2.8621 -5.3533 31 1 5.7791 -2.8694 -4.7198 32 1 6.2102 -3.2924 -8.3521 33 1 2.4103 -0.0965 -2.0012 34 1 1.3198 -1.4672 -1.6100 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718501144.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:23 Heat of formation + Delta-G solvation = -125.724108 kcal Electronic energy + Delta-G solvation = -15539.401179 eV Core-core repulsion = 12856.547072 eV Total energy + Delta-G solvation = -2682.854108 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35049 -39.61710 -36.62512 -34.89807 -34.45977 -32.28204 -30.61354 -27.28205 -26.83737 -24.70934 -22.85439 -21.59772 -21.23071 -18.72311 -18.29007 -17.78303 -16.82535 -16.51313 -16.39543 -16.11382 -15.44090 -15.17519 -14.59165 -14.30634 -14.28204 -13.61429 -13.49761 -13.22826 -12.97277 -12.77517 -12.52667 -12.26699 -12.12040 -11.92116 -11.67605 -11.66106 -11.43628 -10.88537 -10.61292 -10.58092 -10.08016 -8.24707 -6.34765 1.40915 1.42242 1.52046 1.55096 1.94769 2.41798 3.06128 3.10339 3.42244 3.66972 3.85447 4.02675 4.09515 4.23926 4.46593 4.48184 4.58148 4.69598 4.74996 4.83218 4.84387 4.93803 5.06131 5.16867 5.24302 5.37265 5.46903 5.57587 5.76488 5.82629 6.15747 6.57442 6.78224 7.21073 7.34609 8.87265 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.004552 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.201215 B = 6149.347464 C = 6391.767039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 H 0.115 0.885 4 C 0.038 3.962 5 O -0.388 6.388 6 C 0.063 3.937 7 H 0.125 0.875 8 C 0.507 3.493 9 O -0.584 6.584 10 N -0.708 5.708 11 C 0.140 3.860 12 C 0.024 3.976 13 C -0.548 4.548 14 H 0.057 0.943 15 C 0.010 3.990 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.139 4.139 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.414 0.586 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.266 0.734 33 H 0.116 0.884 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.954 11.598 12.748 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.133 0.867 4 C -0.038 4.038 5 O -0.307 6.307 6 C 0.002 3.998 7 H 0.142 0.858 8 C 0.294 3.706 9 O -0.464 6.464 10 N -0.361 5.361 11 C 0.016 3.984 12 C -0.014 4.014 13 C -0.586 4.586 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.177 4.177 22 H 0.062 0.938 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.109 0.891 27 H 0.250 0.750 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.998 10.700 13.049 18.675 hybrid contribution 0.370 -0.417 -0.941 1.094 sum -7.629 10.282 12.108 17.622 Atomic orbital electron populations 1.21836 0.93224 1.01776 1.03257 1.22566 0.97717 1.00776 0.92505 0.86717 1.23606 0.96219 0.87254 0.96693 1.88981 1.72746 1.39328 1.29629 1.23098 1.00543 0.92267 0.83876 0.85780 1.20978 0.76478 0.91058 0.82104 1.90668 1.54031 1.30082 1.71588 1.45993 1.65098 1.11056 1.13912 1.21259 0.98670 0.86513 0.91918 1.19136 0.95681 0.96561 0.89998 1.21493 1.44025 0.93504 0.99618 0.92521 1.25830 0.94993 0.99288 0.98829 1.70052 1.45919 1.24035 1.16446 0.85416 0.78011 0.79344 0.78388 1.19168 1.20127 1.20172 1.23270 0.95717 0.99107 0.99575 0.93796 0.90615 0.91400 0.90159 0.89144 0.74964 0.93686 0.93656 0.96912 0.97000 0.92494 0.86557 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.92 71.98 0.64 -1.23 16 2 C -0.12 -1.66 3.64 -9.80 -0.04 -1.70 16 3 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 4 C 0.04 0.70 7.37 72.35 0.53 1.23 16 5 O -0.39 -11.39 10.81 -130.83 -1.41 -12.81 16 6 C 0.06 1.60 3.76 30.53 0.11 1.72 16 7 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 8 C 0.51 18.18 7.20 87.66 0.63 18.81 16 9 O -0.58 -27.07 16.57 15.12 0.25 -26.82 16 10 N -0.71 -24.63 5.56 -463.07 -2.57 -27.20 16 11 C 0.14 6.11 5.61 86.38 0.48 6.60 16 12 C 0.02 1.18 5.09 29.85 0.15 1.34 16 13 C -0.55 -30.65 9.11 25.60 0.23 -30.41 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.01 0.53 5.46 84.66 0.46 0.99 16 16 N -0.92 -53.65 13.29 21.45 0.28 -53.37 16 17 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.14 -2.63 6.13 31.90 0.20 -2.44 16 22 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.09 1.53 7.69 -2.39 -0.02 1.51 16 27 H 0.41 11.65 8.47 -92.71 -0.79 10.86 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.52 7.78 -2.39 -0.02 1.50 16 Total: -1.00 -71.60 288.93 2.28 -69.33 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.29 Total: 10.38 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 3.41 Total: -5.09 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -2.29 Total: -80.57 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.16 Total: -39.62 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.60 2.28 -69.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718501144.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.399 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds