Wall clock time and date at job start Mon Mar 30 2020 03:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.48084 * 2 1 4 4 C 1.53093 * 109.48028 * 239.97306 * 2 1 3 5 5 C 1.53179 * 109.16235 * 182.40866 * 4 2 1 6 6 H 1.09004 * 109.54764 * 297.11291 * 5 4 2 7 7 C 1.50708 * 109.54481 * 176.85068 * 5 4 2 8 8 O 1.21291 * 119.99857 * 240.44667 * 7 5 4 9 9 N 1.34778 * 119.99893 * 60.44029 * 7 5 4 10 10 C 1.37097 * 120.00023 * 180.02562 * 9 7 5 11 11 H 1.08004 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00049 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00116 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47055 * 59.99941 * 14 12 10 16 16 H 1.48498 * 109.47047 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47119 * 300.00266 * 14 12 10 18 18 C 1.53176 * 109.03818 * 56.98189 * 5 4 2 19 19 C 1.53086 * 109.16495 * 303.02046 * 18 5 4 20 20 H 1.09003 * 109.48074 * 297.61672 * 19 18 5 21 21 C 1.52997 * 109.48363 * 177.58976 * 19 18 5 22 22 O 1.42904 * 109.41726 * 57.60341 * 19 18 5 23 23 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47100 * 300.02114 * 1 2 3 25 25 H 1.09001 * 109.46888 * 60.02482 * 1 2 3 26 26 H 1.09001 * 109.52192 * 62.50367 * 4 2 1 27 27 H 1.08995 * 109.52754 * 302.31316 * 4 2 1 28 28 H 0.97002 * 120.00182 * 0.02562 * 9 7 5 29 29 H 0.97001 * 120.00136 * 179.97438 * 13 12 10 30 30 H 1.09000 * 109.52077 * 183.11076 * 18 5 4 31 31 H 1.08998 * 109.52194 * 62.92458 * 18 5 4 32 32 H 1.09002 * 109.47153 * 59.99800 * 21 19 18 33 33 H 1.09001 * 109.46832 * 299.99991 * 21 19 18 34 34 H 1.09004 * 109.47261 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 1 3.9690 0.2436 -1.2408 7 6 4.0800 -1.5475 -2.3992 8 8 4.7356 -2.5538 -2.2297 9 7 3.8066 -1.1239 -3.6491 10 6 4.2691 -1.8307 -4.7290 11 1 4.8522 -2.7271 -4.5780 12 6 3.9867 -1.3943 -6.0176 13 7 3.2768 -0.3039 -6.2012 14 14 4.6163 -2.3578 -7.4890 15 1 4.0677 -3.7371 -7.4490 16 1 4.1827 -1.6881 -8.7414 17 1 6.0997 -2.4137 -7.4460 18 6 4.0176 -1.4601 0.0808 19 6 3.4307 -0.7095 1.2790 20 1 3.8194 0.3088 1.2959 21 6 3.8227 -1.4268 2.5723 22 8 2.0066 -0.6743 1.1664 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 0.5135 -0.8902 26 1 1.7148 -0.1842 -2.1399 27 1 1.6443 -1.7374 -1.2711 28 1 3.2825 -0.3190 -3.7847 29 1 3.0799 0.0010 -7.1008 30 1 5.1059 -1.4498 0.1419 31 1 3.6613 -2.4902 0.0863 32 1 4.9090 -1.4544 2.6576 33 1 3.4336 -2.4448 2.5554 34 1 3.4051 -0.8919 3.4254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724413812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:42 Heat of formation + Delta-G solvation = -109.747088 kcal Electronic energy + Delta-G solvation = -16231.533209 eV Core-core repulsion = 13549.371917 eV Total energy + Delta-G solvation = -2682.161292 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.69665 -37.78122 -34.07766 -33.51480 -33.04483 -31.13850 -29.51980 -26.13138 -25.29212 -23.06658 -21.60960 -20.31899 -18.86683 -17.84181 -16.34867 -15.88811 -15.37617 -14.81516 -14.49536 -14.27843 -13.69986 -13.52720 -12.91319 -12.52991 -12.40723 -12.25237 -11.91497 -11.87571 -11.59583 -11.46538 -11.08701 -10.85506 -10.71983 -10.44489 -10.42506 -10.18698 -10.05357 -9.51226 -9.32034 -8.29480 -7.97553 -6.42619 -3.83467 3.19246 3.25032 3.29620 3.83133 3.88933 4.16568 4.77914 4.92413 5.09940 5.13698 5.28201 5.29719 5.36930 5.49964 5.60550 5.65429 5.69878 5.77957 5.90066 5.93469 6.08682 6.15635 6.20265 6.21144 6.35604 6.50202 6.57887 6.73268 7.48076 7.54038 8.04962 8.60062 9.16559 9.54033 10.05489 10.74961 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040514 B = 0.006648 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.948476 B = 4210.472997 C = 4741.746497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.056 0.944 4 C -0.139 4.139 5 C -0.101 4.101 6 H 0.080 0.920 7 C 0.446 3.554 8 O -0.595 6.595 9 N -0.560 5.560 10 C -0.302 4.302 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C -0.122 4.122 19 C 0.086 3.914 20 H 0.054 0.946 21 C -0.142 4.142 22 O -0.381 6.381 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.392 0.608 29 H 0.272 0.728 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.601 3.382 11.329 12.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.032 3.968 3 H 0.074 0.926 4 C -0.177 4.177 5 C -0.122 4.122 6 H 0.098 0.902 7 C 0.232 3.768 8 O -0.481 6.481 9 N -0.195 5.195 10 C -0.432 4.432 11 H 0.120 0.880 12 C -0.178 4.178 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.160 4.160 19 C 0.029 3.971 20 H 0.072 0.928 21 C -0.199 4.199 22 O -0.301 6.301 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.226 0.774 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.347 2.720 11.373 12.163 hybrid contribution 0.182 0.225 -1.227 1.260 sum -3.164 2.945 10.146 11.029 Atomic orbital electron populations 1.21755 0.93259 1.02902 1.02120 1.22067 0.94793 0.94828 0.85153 0.92616 1.22227 0.94728 1.02408 0.98358 1.21212 0.95860 1.00013 0.95161 0.90213 1.19794 0.85470 0.87533 0.84005 1.90504 1.44221 1.27737 1.85613 1.41888 1.47623 1.25723 1.04269 1.19684 1.31136 1.08570 0.83793 0.88016 1.25260 0.96970 0.96611 0.98996 1.69601 1.38665 1.22608 1.23389 0.85921 0.79203 0.79379 0.79736 1.19887 1.20933 1.19902 1.21945 1.01285 1.00506 0.92269 1.22121 0.81225 0.98342 0.95457 0.92842 1.21736 1.01226 1.01137 0.95798 1.87866 1.21007 1.78211 1.43019 0.91843 0.92198 0.90983 0.90358 0.90716 0.77418 0.91793 0.90687 0.90463 0.91163 0.91808 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.56 37.16 0.36 -1.34 16 2 C 0.09 1.25 3.26 -26.69 -0.09 1.16 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.14 -2.29 4.58 -26.59 -0.12 -2.41 16 5 C -0.10 -1.86 2.61 -91.58 -0.24 -2.10 16 6 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 7 C 0.45 10.80 7.11 -10.98 -0.08 10.72 16 8 O -0.60 -16.53 15.54 5.55 0.09 -16.44 16 9 N -0.56 -14.41 5.20 -10.96 -0.06 -14.46 16 10 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 16 11 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 13 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.12 -2.07 4.02 -26.60 -0.11 -2.17 16 19 C 0.09 1.21 3.26 -26.69 -0.09 1.12 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.14 -1.66 9.56 37.16 0.36 -1.31 16 22 O -0.38 -5.77 10.05 -35.23 -0.35 -6.12 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.39 9.64 7.42 -40.82 -0.30 9.34 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 282.03 15.07 4.25 4.25 Total: -1.00 -30.92 282.03 -5.90 -36.83 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.28 Total: 8.14 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.25 Total: -4.47 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.67 Total: -38.32 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.27 Total: -22.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.92 -5.90 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724413812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.920 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds