Wall clock time and date at job start Mon Mar 30 2020 03:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.48084 * 2 1 4 4 C 1.53093 * 109.48028 * 239.97306 * 2 1 3 5 5 C 1.53179 * 109.16235 * 182.40866 * 4 2 1 6 6 H 1.09004 * 109.54764 * 297.11291 * 5 4 2 7 7 C 1.50708 * 109.54481 * 176.85068 * 5 4 2 8 8 O 1.21291 * 119.99857 * 240.44667 * 7 5 4 9 9 N 1.34778 * 119.99893 * 60.44029 * 7 5 4 10 10 C 1.37097 * 120.00023 * 180.02562 * 9 7 5 11 11 H 1.08004 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.38947 * 120.00049 * 179.97438 * 10 9 7 13 13 N 1.31410 * 120.00116 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99968 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47055 * 59.99941 * 14 12 10 16 16 H 1.48498 * 109.47047 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47119 * 300.00266 * 14 12 10 18 18 C 1.53176 * 109.03818 * 56.98189 * 5 4 2 19 19 C 1.53086 * 109.16495 * 303.02046 * 18 5 4 20 20 H 1.09003 * 109.48074 * 297.61672 * 19 18 5 21 21 C 1.52997 * 109.48363 * 177.58976 * 19 18 5 22 22 O 1.42904 * 109.41726 * 57.60341 * 19 18 5 23 23 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47100 * 300.02114 * 1 2 3 25 25 H 1.09001 * 109.46888 * 60.02482 * 1 2 3 26 26 H 1.09001 * 109.52192 * 62.50367 * 4 2 1 27 27 H 1.08995 * 109.52754 * 302.31316 * 4 2 1 28 28 H 0.97002 * 120.00182 * 0.02562 * 9 7 5 29 29 H 0.97001 * 120.00136 * 179.97438 * 13 12 10 30 30 H 1.09000 * 109.52077 * 183.11076 * 18 5 4 31 31 H 1.08998 * 109.52194 * 62.92458 * 18 5 4 32 32 H 1.09002 * 109.47153 * 59.99800 * 21 19 18 33 33 H 1.09001 * 109.46832 * 299.99991 * 21 19 18 34 34 H 1.09004 * 109.47261 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 1 3.9690 0.2436 -1.2408 7 6 4.0800 -1.5475 -2.3992 8 8 4.7356 -2.5538 -2.2297 9 7 3.8066 -1.1239 -3.6491 10 6 4.2691 -1.8307 -4.7290 11 1 4.8522 -2.7271 -4.5780 12 6 3.9867 -1.3943 -6.0176 13 7 3.2768 -0.3039 -6.2012 14 14 4.6163 -2.3578 -7.4890 15 1 4.0677 -3.7371 -7.4490 16 1 4.1827 -1.6881 -8.7414 17 1 6.0997 -2.4137 -7.4460 18 6 4.0176 -1.4601 0.0808 19 6 3.4307 -0.7095 1.2790 20 1 3.8194 0.3088 1.2959 21 6 3.8227 -1.4268 2.5723 22 8 2.0066 -0.6743 1.1664 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 0.5135 -0.8902 26 1 1.7148 -0.1842 -2.1399 27 1 1.6443 -1.7374 -1.2711 28 1 3.2825 -0.3190 -3.7847 29 1 3.0799 0.0010 -7.1008 30 1 5.1059 -1.4498 0.1419 31 1 3.6613 -2.4902 0.0863 32 1 4.9090 -1.4544 2.6576 33 1 3.4336 -2.4448 2.5554 34 1 3.4051 -0.8919 3.4254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724413812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:42 Heat of formation + Delta-G solvation = -130.608216 kcal Electronic energy + Delta-G solvation = -16232.437815 eV Core-core repulsion = 13549.371917 eV Total energy + Delta-G solvation = -2683.065898 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14104 -39.50309 -36.09537 -34.71141 -34.48427 -33.17317 -30.60751 -27.51671 -27.06109 -24.61578 -22.71507 -21.63997 -20.70142 -19.87621 -17.76634 -17.39966 -16.83320 -16.47992 -16.10224 -15.92073 -15.16394 -14.89905 -14.61925 -14.11333 -13.54180 -13.50280 -13.45994 -12.97101 -12.91311 -12.78184 -12.72677 -12.48231 -12.24171 -12.14962 -11.85765 -11.67094 -11.53910 -11.34154 -10.65117 -10.14960 -10.05585 -8.50328 -5.99952 1.37125 1.39627 1.50799 1.98225 2.27329 2.75749 3.10955 3.16138 3.68036 3.85206 3.90767 3.98803 4.21625 4.26901 4.38621 4.50187 4.53109 4.62414 4.75793 4.77970 4.86920 5.01776 5.05205 5.09035 5.18375 5.28561 5.33059 5.37111 5.39609 5.95405 6.36411 6.54076 7.07156 7.50295 8.05449 8.66641 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.040514 B = 0.006648 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.948476 B = 4210.472997 C = 4741.746497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.091 3.909 3 H 0.076 0.924 4 C -0.134 4.134 5 C -0.094 4.094 6 H 0.102 0.898 7 C 0.440 3.560 8 O -0.637 6.637 9 N -0.566 5.566 10 C -0.341 4.341 11 H 0.077 0.923 12 C -0.009 4.009 13 N -0.917 5.917 14 Si 0.994 3.006 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.271 1.271 18 C -0.118 4.118 19 C 0.089 3.911 20 H 0.075 0.925 21 C -0.139 4.139 22 O -0.390 6.390 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.397 0.603 29 H 0.279 0.721 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 4.658 11.786 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.033 3.967 3 H 0.094 0.906 4 C -0.172 4.172 5 C -0.116 4.116 6 H 0.121 0.879 7 C 0.228 3.772 8 O -0.525 6.525 9 N -0.201 5.201 10 C -0.471 4.471 11 H 0.095 0.905 12 C -0.210 4.210 13 N -0.558 5.558 14 Si 0.817 3.183 15 H -0.198 1.198 16 H -0.192 1.192 17 H -0.197 1.197 18 C -0.156 4.156 19 C 0.032 3.968 20 H 0.092 0.908 21 C -0.196 4.196 22 O -0.311 6.311 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.231 0.769 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.851 4.021 11.840 13.083 hybrid contribution 0.339 -0.177 -1.368 1.420 sum -3.512 3.844 10.472 11.695 Atomic orbital electron populations 1.21768 0.91570 1.02843 1.03591 1.22177 0.96147 0.95082 0.83274 0.90590 1.22201 0.92988 1.01715 1.00282 1.21225 0.97288 1.00125 0.92912 0.87950 1.20853 0.84157 0.87200 0.84994 1.90467 1.45905 1.29769 1.86376 1.41936 1.47894 1.25796 1.04499 1.19669 1.32910 1.09026 0.85476 0.90456 1.26053 0.96565 0.97394 1.00964 1.69657 1.38490 1.23144 1.24461 0.84985 0.78610 0.78051 0.76660 1.19767 1.19181 1.19659 1.21936 1.01176 0.99431 0.93094 1.22210 0.80711 0.99135 0.94789 0.90760 1.21754 1.02260 1.00515 0.95119 1.87881 1.21491 1.78520 1.43159 0.92714 0.90536 0.89706 0.90221 0.92883 0.76906 0.91106 0.91085 0.93116 0.89754 0.92766 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.56 71.98 0.69 -2.31 16 2 C 0.09 2.33 3.26 30.62 0.10 2.43 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 4 C -0.13 -4.32 4.58 30.69 0.14 -4.18 16 5 C -0.09 -3.44 2.61 -11.42 -0.03 -3.47 16 6 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 7 C 0.44 21.86 7.11 87.66 0.62 22.48 16 8 O -0.64 -36.79 15.54 -3.07 -0.05 -36.83 16 9 N -0.57 -29.79 5.20 -306.98 -1.59 -31.39 16 10 C -0.34 -19.76 9.68 84.04 0.81 -18.95 16 11 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 12 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 13 N -0.92 -49.52 13.05 21.66 0.28 -49.23 16 14 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 18 C -0.12 -3.97 4.02 30.68 0.12 -3.85 16 19 C 0.09 2.31 3.26 30.62 0.10 2.41 16 20 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 21 C -0.14 -2.97 9.56 71.98 0.69 -2.28 16 22 O -0.39 -10.96 10.05 -148.98 -1.50 -12.46 16 23 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 2.53 7.70 -2.39 -0.02 2.51 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.40 19.75 7.42 -92.71 -0.69 19.07 16 29 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.95 8.02 -2.39 -0.02 1.93 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -67.11 282.03 3.28 -63.83 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.39 Total: 28.70 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 3.71 Total: -7.75 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.31 Total: -80.62 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -1.54 Total: -49.29 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.11 3.28 -63.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724413812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.775 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds