Wall clock time and date at job start Mon Mar 30 2020 03:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 H 1.09004 * 109.46881 * 304.99377 * 3 2 1 5 5 C 1.52997 * 109.47504 * 64.99737 * 3 2 1 6 6 O 1.42898 * 109.47319 * 185.00258 * 5 3 2 7 7 C 1.50705 * 109.47056 * 185.00259 * 3 2 1 8 8 O 1.21281 * 119.99661 * 359.97438 * 7 3 2 9 9 N 1.34780 * 119.99956 * 180.02562 * 7 3 2 10 10 C 1.47061 * 136.05469 * 359.62384 * 9 7 3 11 11 C 1.53247 * 88.08181 * 207.20644 * 10 9 7 12 12 C 1.50700 * 114.32278 * 220.47357 * 11 10 9 13 13 H 1.08001 * 120.00137 * 93.76101 * 12 11 10 14 14 C 1.37881 * 119.99835 * 273.74967 * 12 11 10 15 15 N 1.31517 * 119.99952 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00013 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47099 * 90.00397 * 16 14 12 18 18 H 1.48500 * 109.47236 * 210.00267 * 16 14 12 19 19 H 1.48493 * 109.47152 * 330.00624 * 16 14 12 20 20 C 1.47065 * 136.05509 * 179.97438 * 9 7 3 21 21 H 1.08995 * 109.47246 * 300.00573 * 1 2 3 22 22 H 1.08999 * 109.46571 * 60.00468 * 1 2 3 23 23 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47246 * 239.99427 * 2 1 3 25 25 H 1.08997 * 109.47091 * 119.99525 * 2 1 3 26 26 H 1.09002 * 109.47153 * 64.99951 * 5 3 2 27 27 H 1.09001 * 109.46832 * 305.00142 * 5 3 2 28 28 H 0.96701 * 113.99881 * 180.02562 * 6 5 3 29 29 H 1.09005 * 113.47128 * 321.93198 * 10 9 7 30 30 H 1.08999 * 113.47178 * 92.37821 * 10 9 7 31 31 H 1.08995 * 114.01704 * 87.71202 * 11 10 9 32 32 H 0.96992 * 119.99924 * 179.97438 * 15 14 12 33 33 H 1.08998 * 113.46630 * 267.61723 * 20 9 7 34 34 H 1.08997 * 113.46730 * 38.06746 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 8 2.0089 3.5050 1.2591 7 6 3.5420 1.4443 -0.1239 8 8 4.1450 0.3951 -0.2038 9 7 4.2150 2.6118 -0.1449 10 6 3.8630 4.0382 -0.0803 11 6 5.1402 4.3364 -0.8731 12 6 5.8916 5.5555 -0.4039 13 1 6.6938 5.4532 0.3119 14 6 5.5550 6.8016 -0.8887 15 7 4.5779 6.9263 -1.7602 16 14 6.4868 8.3128 -0.3078 17 1 7.6480 8.5524 -1.2020 18 1 5.5857 9.4927 -0.3397 19 1 6.9677 8.0946 1.0801 20 6 5.6241 3.0200 -0.2486 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 2.1408 1.6421 2.1426 27 1 0.5563 2.0471 1.4400 28 1 1.7825 4.0020 2.0572 29 1 2.9500 4.2850 -0.6222 30 1 3.8758 4.4431 0.9316 31 1 5.0103 4.2970 -1.9545 32 1 4.3410 7.8029 -2.1009 33 1 6.1103 3.1512 0.7181 34 1 6.2055 2.4027 -0.9333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:12 Heat of formation + Delta-G solvation = -59.509108 kcal Electronic energy + Delta-G solvation = -16322.717479 eV Core-core repulsion = 13642.734669 eV Total energy + Delta-G solvation = -2679.982810 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64296 -37.41277 -36.53055 -34.20564 -32.58998 -29.75476 -28.04506 -25.18152 -24.81106 -24.19622 -21.38433 -19.82503 -17.95464 -17.29116 -16.77357 -16.20444 -15.43543 -15.08916 -14.58028 -14.20073 -13.92982 -13.15030 -13.11213 -12.58091 -12.51093 -12.03823 -11.67701 -11.46000 -11.29349 -11.08109 -11.02875 -10.85602 -10.73174 -10.50945 -10.19928 -9.78937 -9.45018 -8.99917 -8.80313 -8.46634 -7.64093 -6.10078 -4.14417 3.27085 3.27999 3.34956 3.37576 3.75710 4.35030 4.39267 4.95038 4.99075 5.12625 5.22066 5.36738 5.43290 5.45524 5.65103 5.84335 5.86656 6.01901 6.20822 6.25068 6.34436 6.38960 6.42857 6.56947 6.92740 6.97875 7.13918 7.66751 7.80711 7.88953 8.29910 8.71868 8.88338 8.93890 9.50857 10.99883 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.044734 B = 0.006722 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.772952 B = 4164.166560 C = 4462.752002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.102 4.102 4 H 0.099 0.901 5 C 0.082 3.918 6 O -0.549 6.549 7 C 0.534 3.466 8 O -0.576 6.576 9 N -0.632 5.632 10 C 0.139 3.861 11 C 0.022 3.978 12 C -0.513 4.513 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.098 3.902 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.372 0.628 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 -6.688 5.504 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.124 4.124 4 H 0.117 0.883 5 C 0.003 3.997 6 O -0.355 6.355 7 C 0.323 3.677 8 O -0.458 6.458 9 N -0.364 5.364 10 C 0.017 3.983 11 C 0.002 3.998 12 C -0.551 4.551 13 H 0.080 0.920 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.025 4.025 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.220 0.780 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.885 -7.455 4.771 11.854 hybrid contribution 0.120 1.035 0.884 1.366 sum -7.765 -6.421 5.655 11.555 Atomic orbital electron populations 1.21876 0.95676 1.01675 1.01913 1.21253 0.94958 0.93978 1.03679 1.21279 0.93709 0.97808 0.99570 0.88311 1.22089 0.98083 0.83472 0.96013 1.87017 1.84234 1.20623 1.43614 1.19911 0.88905 0.82194 0.76695 1.90610 1.70557 1.31155 1.53482 1.49968 1.10811 1.06806 1.68796 1.23229 0.99998 0.74776 1.00332 1.20459 0.92311 0.90485 0.96498 1.20894 1.17817 0.90626 1.25783 0.92048 1.25011 0.94899 0.99098 0.94514 1.69964 1.28511 1.23982 1.29866 0.86567 0.79696 0.82322 0.79251 1.20588 1.21217 1.19778 1.23323 0.82805 0.96392 0.99949 0.92653 0.92528 0.92508 0.90638 0.91437 0.93915 0.92976 0.78017 0.92271 0.90636 0.91838 0.92783 0.91203 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 2 C -0.10 -1.35 4.75 -26.73 -0.13 -1.48 16 3 C -0.10 -1.62 2.42 -91.77 -0.22 -1.84 16 4 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 5 C 0.08 1.09 6.28 37.16 0.23 1.33 16 6 O -0.55 -8.11 8.35 -35.23 -0.29 -8.40 16 7 C 0.53 11.02 7.40 -10.98 -0.08 10.94 16 8 O -0.58 -13.42 16.70 5.56 0.09 -13.33 16 9 N -0.63 -13.69 3.58 -185.36 -0.66 -14.36 16 10 C 0.14 3.07 5.21 -8.63 -0.04 3.02 16 11 C 0.02 0.53 3.77 -91.37 -0.34 0.19 16 12 C -0.51 -13.42 8.82 -34.44 -0.30 -13.73 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -24.66 13.26 55.43 0.74 -23.93 16 16 Si 0.89 20.35 29.54 -169.99 -5.02 15.32 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.10 2.17 8.19 -8.49 -0.07 2.10 16 21 H 0.05 0.51 6.46 -51.93 -0.34 0.17 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.56 6.34 -51.93 -0.33 0.23 16 28 H 0.37 3.85 9.12 45.56 0.42 4.26 16 29 H 0.06 1.36 7.57 -51.93 -0.39 0.96 16 30 H 0.08 1.65 7.07 -51.93 -0.37 1.28 16 31 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 280.43 15.07 4.23 4.23 Total: -1.00 -30.72 280.43 -5.97 -36.69 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.35 Total: 2.73 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.70 Total: 1.03 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.07 Total: -38.28 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.20 Total: -21.73 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.72 -5.97 -36.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.816 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds