Wall clock time and date at job start Mon Mar 30 2020 03:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 H 1.09004 * 109.46881 * 304.99377 * 3 2 1 5 5 C 1.52997 * 109.47504 * 64.99737 * 3 2 1 6 6 O 1.42898 * 109.47319 * 185.00258 * 5 3 2 7 7 C 1.50705 * 109.47056 * 185.00259 * 3 2 1 8 8 O 1.21281 * 119.99661 * 359.97438 * 7 3 2 9 9 N 1.34780 * 119.99956 * 180.02562 * 7 3 2 10 10 C 1.47061 * 136.05469 * 359.62384 * 9 7 3 11 11 C 1.53247 * 88.08181 * 207.20644 * 10 9 7 12 12 C 1.50700 * 114.32278 * 220.47357 * 11 10 9 13 13 H 1.08001 * 120.00137 * 93.76101 * 12 11 10 14 14 C 1.37881 * 119.99835 * 273.74967 * 12 11 10 15 15 N 1.31517 * 119.99952 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00013 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47099 * 90.00397 * 16 14 12 18 18 H 1.48500 * 109.47236 * 210.00267 * 16 14 12 19 19 H 1.48493 * 109.47152 * 330.00624 * 16 14 12 20 20 C 1.47065 * 136.05509 * 179.97438 * 9 7 3 21 21 H 1.08995 * 109.47246 * 300.00573 * 1 2 3 22 22 H 1.08999 * 109.46571 * 60.00468 * 1 2 3 23 23 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47246 * 239.99427 * 2 1 3 25 25 H 1.08997 * 109.47091 * 119.99525 * 2 1 3 26 26 H 1.09002 * 109.47153 * 64.99951 * 5 3 2 27 27 H 1.09001 * 109.46832 * 305.00142 * 5 3 2 28 28 H 0.96701 * 113.99881 * 180.02562 * 6 5 3 29 29 H 1.09005 * 113.47128 * 321.93198 * 10 9 7 30 30 H 1.08999 * 113.47178 * 92.37821 * 10 9 7 31 31 H 1.08995 * 114.01704 * 87.71202 * 11 10 9 32 32 H 0.96992 * 119.99924 * 179.97438 * 15 14 12 33 33 H 1.08998 * 113.46630 * 267.61723 * 20 9 7 34 34 H 1.08997 * 113.46730 * 38.06746 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 8 2.0089 3.5050 1.2591 7 6 3.5420 1.4443 -0.1239 8 8 4.1450 0.3951 -0.2038 9 7 4.2150 2.6118 -0.1449 10 6 3.8630 4.0382 -0.0803 11 6 5.1402 4.3364 -0.8731 12 6 5.8916 5.5555 -0.4039 13 1 6.6938 5.4532 0.3119 14 6 5.5550 6.8016 -0.8887 15 7 4.5779 6.9263 -1.7602 16 14 6.4868 8.3128 -0.3078 17 1 7.6480 8.5524 -1.2020 18 1 5.5857 9.4927 -0.3397 19 1 6.9677 8.0946 1.0801 20 6 5.6241 3.0200 -0.2486 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5137 0.8900 26 1 2.1408 1.6421 2.1426 27 1 0.5563 2.0471 1.4400 28 1 1.7825 4.0020 2.0572 29 1 2.9500 4.2850 -0.6222 30 1 3.8758 4.4431 0.9316 31 1 5.0103 4.2970 -1.9545 32 1 4.3410 7.8029 -2.1009 33 1 6.1103 3.1512 0.7181 34 1 6.2055 2.4027 -0.9333 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:12 Heat of formation + Delta-G solvation = -81.173527 kcal Electronic energy + Delta-G solvation = -16323.656919 eV Core-core repulsion = 13642.734669 eV Total energy + Delta-G solvation = -2680.922249 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29072 -39.05510 -37.84337 -35.35903 -34.59625 -31.32529 -29.42924 -26.95666 -26.62669 -25.38357 -22.84258 -21.40354 -19.56842 -18.70247 -18.37916 -17.86588 -16.93829 -16.66304 -16.31346 -15.78409 -15.17353 -14.62459 -14.25112 -14.21551 -13.91144 -13.55736 -13.19610 -13.13140 -12.77668 -12.68825 -12.53623 -12.40645 -12.05643 -12.03056 -11.57813 -11.35276 -10.98750 -10.89220 -10.48809 -10.42102 -9.43079 -8.12392 -6.23227 1.49171 1.50625 1.60590 1.65033 2.12891 2.49320 3.16593 3.28969 3.58142 3.87729 4.10585 4.26822 4.34242 4.40472 4.51085 4.51635 4.55486 4.65107 4.74996 4.80842 4.89716 5.09214 5.14509 5.19561 5.23132 5.29941 5.45154 5.64417 5.86218 6.29076 6.84192 6.93184 7.03300 7.23823 7.45855 8.98031 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.044734 B = 0.006722 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.772952 B = 4164.166560 C = 4462.752002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.100 4.100 4 H 0.097 0.903 5 C 0.087 3.913 6 O -0.576 6.576 7 C 0.525 3.475 8 O -0.606 6.606 9 N -0.636 5.636 10 C 0.165 3.835 11 C 0.007 3.993 12 C -0.525 4.525 13 H 0.065 0.935 14 C 0.020 3.980 15 N -0.920 5.920 16 Si 0.961 3.039 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.263 1.263 20 C 0.101 3.899 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.392 0.608 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 -6.484 6.945 13.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.121 4.121 4 H 0.115 0.885 5 C 0.009 3.991 6 O -0.385 6.385 7 C 0.316 3.684 8 O -0.490 6.490 9 N -0.368 5.368 10 C 0.043 3.957 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.083 0.917 14 C -0.180 4.180 15 N -0.558 5.558 16 Si 0.786 3.214 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.187 1.187 20 C -0.021 4.021 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.243 0.757 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.890 -7.257 6.232 13.059 hybrid contribution 0.454 0.906 0.406 1.092 sum -8.436 -6.351 6.638 12.472 Atomic orbital electron populations 1.21835 0.92674 1.03053 1.02811 1.21239 0.97415 0.92022 1.02739 1.21409 0.89672 0.99835 1.01147 0.88533 1.22118 1.00176 0.82613 0.94207 1.86908 1.84828 1.21441 1.45316 1.20897 0.91008 0.81144 0.75338 1.90586 1.71788 1.31987 1.54620 1.50022 1.10381 1.07111 1.69251 1.22846 0.98015 0.74915 0.99875 1.20383 0.94428 0.91447 0.94969 1.21171 1.17988 0.91347 1.25811 0.91683 1.25773 0.95663 1.01961 0.94556 1.70081 1.30008 1.24676 1.31074 0.85520 0.78241 0.78589 0.79065 1.20483 1.20952 1.18740 1.23208 0.83592 0.95172 1.00166 0.91009 0.92312 0.90978 0.92425 0.91649 0.93728 0.89302 0.75739 0.93289 0.89892 0.95161 0.92733 0.90058 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.67 71.98 0.70 -1.84 16 2 C -0.10 -2.43 4.75 30.59 0.15 -2.28 16 3 C -0.10 -3.02 2.42 -11.54 -0.03 -3.04 16 4 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 5 C 0.09 2.09 6.28 71.98 0.45 2.55 16 6 O -0.58 -15.85 8.35 -148.98 -1.24 -17.09 16 7 C 0.52 21.56 7.40 87.66 0.65 22.21 16 8 O -0.61 -28.35 16.70 -3.03 -0.05 -28.40 16 9 N -0.64 -27.55 3.58 -858.74 -3.08 -30.63 16 10 C 0.17 7.31 5.21 83.10 0.43 7.75 16 11 C 0.01 0.36 3.77 -11.28 -0.04 0.31 16 12 C -0.53 -27.49 8.82 25.60 0.23 -27.27 16 13 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 14 C 0.02 1.08 5.46 84.66 0.46 1.54 16 15 N -0.92 -51.63 13.26 21.45 0.28 -51.35 16 16 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 C 0.10 4.54 8.19 83.19 0.68 5.22 16 21 H 0.07 1.02 6.46 -2.39 -0.02 1.00 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.54 6.34 -2.39 -0.02 1.52 16 28 H 0.39 7.15 9.12 -74.06 -0.68 6.47 16 29 H 0.05 2.26 7.57 -2.38 -0.02 2.24 16 30 H 0.08 3.55 7.07 -2.39 -0.02 3.53 16 31 H 0.03 1.70 8.11 -2.39 -0.02 1.68 16 32 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.08 3.44 8.10 -2.39 -0.02 3.42 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.70 280.43 2.03 -63.68 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.41 Total: 15.28 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 3.67 Total: 5.14 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.79 Total: -81.98 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -1.29 Total: -45.49 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.70 2.03 -63.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.497 kcal (2) G-P(sol) polarization free energy of solvation -65.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds