Wall clock time and date at job start Mon Mar 30 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52270 * 2 1 4 4 C 1.53040 * 109.49830 * 239.92242 * 2 1 3 5 5 C 1.53039 * 109.54003 * 178.68098 * 4 2 1 6 6 H 1.09003 * 109.49696 * 301.41248 * 5 4 2 7 7 C 1.52995 * 109.49967 * 181.34930 * 5 4 2 8 8 C 1.52762 * 109.38129 * 61.23877 * 5 4 2 9 9 H 1.09005 * 109.51205 * 185.70606 * 8 5 4 10 10 C 1.50706 * 109.43089 * 65.42726 * 8 5 4 11 11 O 1.20823 * 119.99710 * 260.51749 * 10 8 5 12 12 O 1.34222 * 119.99825 * 80.52036 * 10 8 5 13 13 N 1.46925 * 109.00739 * 305.59013 * 8 5 4 14 14 C 1.36941 * 120.62620 * 233.58201 * 13 8 5 15 15 H 1.08001 * 120.00496 * 27.24929 * 14 13 8 16 16 C 1.38818 * 119.99626 * 207.24369 * 14 13 8 17 17 N 1.31623 * 120.00147 * 17.85920 * 16 14 13 18 18 Si 1.86799 * 119.99809 * 197.85387 * 16 14 13 19 19 H 1.48494 * 109.47104 * 84.85363 * 18 16 14 20 20 H 1.48496 * 109.47442 * 324.85322 * 18 16 14 21 21 H 1.48497 * 109.46987 * 204.84860 * 18 16 14 22 22 C 1.46925 * 118.73950 * 53.31148 * 13 8 5 23 23 H 1.08999 * 109.47238 * 299.91277 * 1 2 3 24 24 H 1.09001 * 109.47195 * 59.91977 * 1 2 3 25 25 H 1.09008 * 109.46948 * 179.91389 * 1 2 3 26 26 H 1.09000 * 109.46284 * 298.70330 * 4 2 1 27 27 H 1.08999 * 109.46251 * 58.65964 * 4 2 1 28 28 H 1.09002 * 109.47337 * 59.99837 * 7 5 4 29 29 H 1.09007 * 109.47306 * 180.02562 * 7 5 4 30 30 H 1.09000 * 109.47346 * 299.99918 * 7 5 4 31 31 H 0.96705 * 116.99477 * 179.97438 * 12 10 8 32 32 H 0.96989 * 120.00012 * 179.97438 * 17 16 14 33 33 H 1.08995 * 109.58882 * 66.42869 * 22 13 8 34 34 H 1.09005 * 109.58494 * 186.71337 * 22 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 3.5709 -0.6949 -1.2661 6 1 3.9159 0.3390 -1.2542 7 6 4.0798 -1.3884 -2.5313 8 6 4.1055 -1.4215 -0.0333 9 1 5.1896 -1.3159 0.0099 10 6 3.7402 -2.8814 -0.1140 11 8 2.7890 -3.3010 0.5017 12 8 4.4715 -3.7154 -0.8698 13 7 3.5046 -0.8291 1.1695 14 6 4.2937 -0.3785 2.1940 15 1 5.2998 -0.0414 1.9927 16 6 3.8002 -0.3549 3.4913 17 7 2.7408 -1.0700 3.8056 18 14 4.6399 0.6916 4.7910 19 1 4.1226 2.0816 4.7174 20 1 6.1056 0.6957 4.5524 21 1 4.3589 0.1296 6.1364 22 6 2.0413 -0.7238 1.2495 23 1 -0.3634 0.5125 0.8907 24 1 -0.3633 0.5151 -0.8893 25 1 -0.3633 -1.0277 -0.0015 26 1 1.6968 -1.7572 -1.2354 27 1 1.6582 -0.2244 -2.1389 28 1 3.6969 -0.8687 -3.4096 29 1 5.1696 -1.3686 -2.5433 30 1 3.7355 -2.4226 -2.5423 31 1 4.1986 -4.6429 -0.8899 32 1 2.3963 -1.0538 4.7121 33 1 1.6053 -1.7216 1.2979 34 1 1.7637 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885812138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:56 Heat of formation + Delta-G solvation = -85.773962 kcal Electronic energy + Delta-G solvation = -17191.160875 eV Core-core repulsion = 14510.039136 eV Total energy + Delta-G solvation = -2681.121739 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82458 -37.42376 -35.14124 -33.72440 -32.91534 -30.72953 -26.57902 -26.22155 -25.38684 -22.56937 -21.32645 -19.82449 -18.87878 -17.19716 -16.56866 -15.44559 -15.35692 -14.73783 -13.98760 -13.70398 -13.43450 -13.37913 -12.64226 -12.29179 -12.05489 -11.88584 -11.65577 -11.25227 -11.09940 -10.99813 -10.75206 -10.59146 -10.48606 -10.33338 -10.13649 -9.87761 -9.55077 -9.47597 -9.24656 -8.43358 -6.78846 -5.85713 -3.32495 3.23209 3.34540 3.40686 3.42236 3.92056 4.42294 5.20552 5.28832 5.39870 5.45451 5.56268 5.77748 6.00006 6.03749 6.10839 6.17530 6.21236 6.31766 6.40902 6.44233 6.49771 6.55879 6.75204 6.83854 6.96406 6.99808 7.30195 7.48251 7.73416 7.89377 8.33731 8.87221 9.10842 9.71453 10.27256 11.19455 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.011276 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.806020 B = 2482.605353 C = 2884.408090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 H 0.062 0.938 4 C -0.103 4.103 5 C -0.095 4.095 6 H 0.082 0.918 7 C -0.147 4.147 8 C 0.184 3.816 9 H 0.091 0.909 10 C 0.448 3.552 11 O -0.503 6.503 12 O -0.536 6.536 13 N -0.555 5.555 14 C -0.272 4.272 15 H 0.072 0.928 16 C 0.012 3.988 17 N -0.884 5.884 18 Si 0.908 3.092 19 H -0.284 1.284 20 H -0.277 1.277 21 H -0.290 1.290 22 C 0.167 3.833 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.382 0.618 32 H 0.257 0.743 33 H 0.047 0.953 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 0.332 -9.925 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 H 0.080 0.920 4 C -0.141 4.141 5 C -0.115 4.115 6 H 0.101 0.899 7 C -0.204 4.204 8 C 0.071 3.929 9 H 0.109 0.891 10 C 0.287 3.713 11 O -0.389 6.389 12 O -0.347 6.347 13 N -0.274 5.274 14 C -0.401 4.401 15 H 0.090 0.910 16 C -0.189 4.189 17 N -0.525 5.525 18 Si 0.737 3.263 19 H -0.211 1.211 20 H -0.203 1.203 21 H -0.216 1.216 22 C 0.042 3.958 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.239 0.761 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.078 0.619 -9.501 9.521 hybrid contribution 0.185 -0.356 0.813 0.907 sum 0.107 0.263 -8.688 8.692 Atomic orbital electron populations 1.21705 0.96339 1.01126 1.00414 1.21782 0.94326 1.00024 0.97687 0.91978 1.21576 0.94529 1.00425 0.97551 1.21421 0.96211 1.00246 0.93607 0.89946 1.21887 1.01109 1.00707 0.96727 1.20509 0.98891 0.83226 0.90259 0.89065 1.26486 0.79774 0.90976 0.74094 1.90623 1.28493 1.77934 1.41818 1.84792 1.59830 1.23474 1.66608 1.44233 1.02836 1.64233 1.16049 1.19241 0.98629 1.36379 0.85872 0.91043 1.25193 0.98308 0.98273 0.97150 1.70115 1.25026 1.38356 1.18990 0.86245 0.79225 0.80164 0.80707 1.21058 1.20262 1.21643 1.21123 0.81852 0.98756 0.94094 0.92963 0.93944 0.93180 0.92745 0.93255 0.93200 0.92492 0.92391 0.76091 0.93330 0.93479 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 37.16 0.34 -2.02 16 2 C -0.12 -2.33 2.87 -90.50 -0.26 -2.59 16 3 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.10 -1.84 4.29 -26.69 -0.11 -1.95 16 5 C -0.09 -1.66 2.63 -90.72 -0.24 -1.90 16 6 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 7 C -0.15 -2.11 8.57 37.15 0.32 -1.79 16 8 C 0.18 3.89 2.79 -68.97 -0.19 3.70 16 9 H 0.09 1.88 7.93 -51.93 -0.41 1.47 16 10 C 0.45 9.54 5.87 36.01 0.21 9.76 16 11 O -0.50 -12.60 14.70 -18.75 -0.28 -12.88 16 12 O -0.54 -9.06 11.71 -39.24 -0.46 -9.52 16 13 N -0.55 -13.96 2.57 -166.34 -0.43 -14.39 16 14 C -0.27 -7.39 9.58 -15.06 -0.14 -7.54 16 15 H 0.07 1.87 7.89 -52.49 -0.41 1.45 16 16 C 0.01 0.33 4.90 -17.43 -0.09 0.24 16 17 N -0.88 -25.92 11.20 55.49 0.62 -25.30 16 18 Si 0.91 21.44 29.59 -169.99 -5.03 16.41 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.17 4.11 4.11 -3.71 -0.02 4.09 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 26 H 0.05 1.04 7.07 -51.93 -0.37 0.68 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.86 6.16 -51.93 -0.32 0.54 16 31 H 0.38 4.91 9.10 45.56 0.41 5.33 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.05 1.29 6.18 -51.93 -0.32 0.97 16 34 H 0.08 2.32 6.03 -51.93 -0.31 2.01 16 LS Contribution 269.71 15.07 4.06 4.06 Total: -1.00 -31.30 269.71 -5.93 -37.24 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.25 Total: 4.36 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -0.18 Total: 0.00 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.19 Total: -39.68 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.73 Total: -22.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.30 -5.93 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885812138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.537 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds