Wall clock time and date at job start Mon Mar 30 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52270 * 2 1 4 4 C 1.53040 * 109.49830 * 239.92242 * 2 1 3 5 5 C 1.53039 * 109.54003 * 178.68098 * 4 2 1 6 6 H 1.09003 * 109.49696 * 301.41248 * 5 4 2 7 7 C 1.52995 * 109.49967 * 181.34930 * 5 4 2 8 8 C 1.52762 * 109.38129 * 61.23877 * 5 4 2 9 9 H 1.09005 * 109.51205 * 185.70606 * 8 5 4 10 10 C 1.50706 * 109.43089 * 65.42726 * 8 5 4 11 11 O 1.20823 * 119.99710 * 260.51749 * 10 8 5 12 12 O 1.34222 * 119.99825 * 80.52036 * 10 8 5 13 13 N 1.46925 * 109.00739 * 305.59013 * 8 5 4 14 14 C 1.36941 * 120.62620 * 233.58201 * 13 8 5 15 15 H 1.08001 * 120.00496 * 27.24929 * 14 13 8 16 16 C 1.38818 * 119.99626 * 207.24369 * 14 13 8 17 17 N 1.31623 * 120.00147 * 17.85920 * 16 14 13 18 18 Si 1.86799 * 119.99809 * 197.85387 * 16 14 13 19 19 H 1.48494 * 109.47104 * 84.85363 * 18 16 14 20 20 H 1.48496 * 109.47442 * 324.85322 * 18 16 14 21 21 H 1.48497 * 109.46987 * 204.84860 * 18 16 14 22 22 C 1.46925 * 118.73950 * 53.31148 * 13 8 5 23 23 H 1.08999 * 109.47238 * 299.91277 * 1 2 3 24 24 H 1.09001 * 109.47195 * 59.91977 * 1 2 3 25 25 H 1.09008 * 109.46948 * 179.91389 * 1 2 3 26 26 H 1.09000 * 109.46284 * 298.70330 * 4 2 1 27 27 H 1.08999 * 109.46251 * 58.65964 * 4 2 1 28 28 H 1.09002 * 109.47337 * 59.99837 * 7 5 4 29 29 H 1.09007 * 109.47306 * 180.02562 * 7 5 4 30 30 H 1.09000 * 109.47346 * 299.99918 * 7 5 4 31 31 H 0.96705 * 116.99477 * 179.97438 * 12 10 8 32 32 H 0.96989 * 120.00012 * 179.97438 * 17 16 14 33 33 H 1.08995 * 109.58882 * 66.42869 * 22 13 8 34 34 H 1.09005 * 109.58494 * 186.71337 * 22 13 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 3.5709 -0.6949 -1.2661 6 1 3.9159 0.3390 -1.2542 7 6 4.0798 -1.3884 -2.5313 8 6 4.1055 -1.4215 -0.0333 9 1 5.1896 -1.3159 0.0099 10 6 3.7402 -2.8814 -0.1140 11 8 2.7890 -3.3010 0.5017 12 8 4.4715 -3.7154 -0.8698 13 7 3.5046 -0.8291 1.1695 14 6 4.2937 -0.3785 2.1940 15 1 5.2998 -0.0414 1.9927 16 6 3.8002 -0.3549 3.4913 17 7 2.7408 -1.0700 3.8056 18 14 4.6399 0.6916 4.7910 19 1 4.1226 2.0816 4.7174 20 1 6.1056 0.6957 4.5524 21 1 4.3589 0.1296 6.1364 22 6 2.0413 -0.7238 1.2495 23 1 -0.3634 0.5125 0.8907 24 1 -0.3633 0.5151 -0.8893 25 1 -0.3633 -1.0277 -0.0015 26 1 1.6968 -1.7572 -1.2354 27 1 1.6582 -0.2244 -2.1389 28 1 3.6969 -0.8687 -3.4096 29 1 5.1696 -1.3686 -2.5433 30 1 3.7355 -2.4226 -2.5423 31 1 4.1986 -4.6429 -0.8899 32 1 2.3963 -1.0538 4.7121 33 1 1.6053 -1.7216 1.2979 34 1 1.7637 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885812138.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:56 Heat of formation + Delta-G solvation = -106.613009 kcal Electronic energy + Delta-G solvation = -17192.064524 eV Core-core repulsion = 14510.039136 eV Total energy + Delta-G solvation = -2682.025388 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49448 -39.05722 -36.78854 -35.55994 -34.43426 -32.63717 -28.24008 -27.67767 -27.15830 -24.38672 -22.91920 -21.38609 -20.50862 -18.94218 -18.43956 -17.11704 -17.04267 -16.56078 -15.73808 -15.21702 -15.16706 -14.96415 -14.26179 -13.84810 -13.57765 -13.30794 -13.01040 -12.96848 -12.89088 -12.66821 -12.46143 -12.23632 -12.17206 -12.07334 -11.73749 -11.49596 -11.29525 -11.03602 -10.98628 -10.45669 -8.77721 -7.91415 -5.42269 1.46230 1.46815 1.54567 1.56830 2.33802 2.51582 3.26048 3.52524 3.94968 3.99573 4.07673 4.28061 4.58866 4.61794 4.67481 4.80962 4.84280 4.89231 4.96610 5.07289 5.10802 5.15680 5.30305 5.43585 5.44846 5.54354 5.57391 5.67823 5.75005 6.00191 6.30865 7.05510 7.28824 7.75230 8.26603 9.12331 Molecular weight = 227.13amu Principal moments of inertia in cm(-1) A = 0.026069 B = 0.011276 C = 0.009705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.806020 B = 2482.605353 C = 2884.408090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.063 0.937 4 C -0.098 4.098 5 C -0.089 4.089 6 H 0.090 0.910 7 C -0.138 4.138 8 C 0.173 3.827 9 H 0.096 0.904 10 C 0.456 3.544 11 O -0.547 6.547 12 O -0.517 6.517 13 N -0.576 5.576 14 C -0.280 4.280 15 H 0.079 0.921 16 C -0.045 4.045 17 N -0.925 5.925 18 Si 0.974 3.026 19 H -0.279 1.279 20 H -0.264 1.264 21 H -0.298 1.298 22 C 0.179 3.821 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.406 0.594 32 H 0.250 0.750 33 H 0.009 0.991 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 1.164 -12.226 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.082 0.918 4 C -0.135 4.135 5 C -0.109 4.109 6 H 0.108 0.892 7 C -0.196 4.196 8 C 0.062 3.938 9 H 0.114 0.886 10 C 0.297 3.703 11 O -0.436 6.436 12 O -0.329 6.329 13 N -0.295 5.295 14 C -0.410 4.410 15 H 0.097 0.903 16 C -0.242 4.242 17 N -0.569 5.569 18 Si 0.801 3.199 19 H -0.206 1.206 20 H -0.188 1.188 21 H -0.225 1.225 22 C 0.054 3.946 23 H 0.064 0.936 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.266 0.734 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.929 1.437 -11.860 11.983 hybrid contribution -0.057 -0.718 1.427 1.598 sum 0.872 0.720 -10.433 10.494 Atomic orbital electron populations 1.21665 0.94473 1.01055 1.01845 1.21676 0.95964 0.99419 0.96276 0.91826 1.21548 0.94826 0.99454 0.97686 1.21412 0.95895 1.00431 0.93117 0.89205 1.21829 1.01816 1.00161 0.95789 1.20768 0.99146 0.83502 0.90376 0.88566 1.26169 0.79144 0.91514 0.73503 1.90637 1.30514 1.78736 1.43747 1.84674 1.58328 1.24901 1.64990 1.44370 1.02822 1.65704 1.16651 1.19652 0.98971 1.35773 0.86605 0.90295 1.26004 0.99189 0.99656 0.99311 1.70302 1.27094 1.40572 1.18931 0.85197 0.78805 0.78362 0.77522 1.20564 1.18818 1.22465 1.20810 0.82074 0.96562 0.95176 0.93568 0.90440 0.94015 0.94432 0.89588 0.90437 0.91418 0.93047 0.73386 0.94061 0.97330 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.20 71.98 0.66 -3.75 16 2 C -0.11 -4.40 2.87 -10.72 -0.03 -4.43 16 3 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.10 -3.24 4.29 30.62 0.13 -3.11 16 5 C -0.09 -2.87 2.63 -10.86 -0.03 -2.89 16 6 H 0.09 2.80 8.14 -2.39 -0.02 2.79 16 7 C -0.14 -3.42 8.57 71.98 0.62 -2.80 16 8 C 0.17 7.17 2.79 44.09 0.12 7.29 16 9 H 0.10 3.83 7.93 -2.38 -0.02 3.82 16 10 C 0.46 19.10 5.87 71.24 0.42 19.52 16 11 O -0.55 -27.91 14.70 21.97 0.32 -27.58 16 12 O -0.52 -16.28 11.71 -51.34 -0.60 -16.88 16 13 N -0.58 -29.35 2.57 -680.17 -1.75 -31.10 16 14 C -0.28 -15.42 9.58 84.03 0.81 -14.62 16 15 H 0.08 4.10 7.89 -2.91 -0.02 4.08 16 16 C -0.04 -2.53 4.90 84.86 0.42 -2.11 16 17 N -0.93 -56.74 11.20 21.65 0.24 -56.50 16 18 Si 0.97 44.91 29.59 68.60 2.03 46.94 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 22 C 0.18 9.12 4.11 86.36 0.35 9.48 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.04 1.38 7.07 -2.39 -0.02 1.36 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.05 1.34 6.16 -2.39 -0.01 1.33 16 31 H 0.41 9.42 9.10 -74.05 -0.67 8.74 16 32 H 0.25 14.85 8.31 -92.72 -0.77 14.08 16 33 H 0.01 0.50 6.18 -2.39 -0.01 0.48 16 34 H 0.05 2.73 6.03 -2.38 -0.01 2.72 16 Total: -1.00 -70.44 269.71 4.13 -66.31 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.42 Total: 16.26 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 3.47 Total: 2.56 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.51 Total: -87.60 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -0.28 Total: -44.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.44 4.13 -66.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885812138.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.304 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds