Wall clock time and date at job start Mon Mar 30 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46846 * 111.00302 * 66.03980 * 13 12 10 15 15 C 1.53040 * 109.52612 * 185.83953 * 14 13 12 16 16 C 1.53121 * 109.27852 * 300.82379 * 15 14 13 17 17 C 1.53122 * 109.15829 * 57.65537 * 16 15 14 18 18 H 1.08994 * 109.50471 * 62.32443 * 17 16 15 19 19 N 1.46905 * 109.50084 * 182.40314 * 17 16 15 20 20 C 1.46850 * 111.00092 * 190.25451 * 13 12 10 21 21 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 23 23 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 24 24 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 25 25 H 1.09000 * 109.46560 * 305.86063 * 14 13 12 26 26 H 1.09005 * 109.45982 * 65.82575 * 14 13 12 27 27 H 1.09004 * 109.50209 * 60.76140 * 15 14 13 28 28 H 1.08996 * 109.50263 * 180.84485 * 15 14 13 29 29 H 1.09005 * 109.52136 * 177.55753 * 16 15 14 30 30 H 1.08999 * 109.52316 * 297.74847 * 16 15 14 31 31 H 1.00891 * 111.00020 * 299.99971 * 19 17 16 32 32 H 1.00904 * 110.99885 * 63.95624 * 19 17 16 33 33 H 1.08998 * 109.45898 * 294.17075 * 20 13 12 34 34 H 1.09001 * 109.46248 * 54.14334 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9634 -6.0118 1.2713 15 6 4.0435 -7.0923 1.1834 16 6 3.3813 -8.4500 0.9328 17 6 2.5518 -8.3750 -0.3521 18 1 3.2078 -8.1653 -1.1970 19 7 1.8668 -9.6563 -0.5691 20 6 1.5148 -7.2573 -0.2196 21 1 -0.4850 0.8400 -0.0004 22 1 0.3533 -2.3906 0.0005 23 1 0.6167 -4.9162 0.9030 24 1 0.6174 -4.9252 -0.8769 25 1 3.4325 -5.0417 1.4355 26 1 2.2925 -6.2355 2.1008 27 1 4.7229 -6.8618 0.3627 28 1 4.6015 -7.1261 2.1191 29 1 4.1495 -9.2159 0.8263 30 1 2.7315 -8.6987 1.7719 31 1 2.5307 -10.4109 -0.6566 32 1 1.2039 -9.8414 0.1687 33 1 0.8508 -7.4752 0.6169 34 1 0.9320 -7.1918 -1.1384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041028836.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:36 Heat of formation + Delta-G solvation = -38.202305 kcal Electronic energy + Delta-G solvation = -15989.145517 eV Core-core repulsion = 13342.379391 eV Total energy + Delta-G solvation = -2646.766126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 227.137 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.28361 -37.71379 -34.62495 -33.70455 -32.16659 -31.15897 -28.31874 -27.21133 -24.64079 -22.70854 -22.12279 -19.74584 -19.12319 -17.81936 -16.30123 -15.83210 -15.44276 -14.83355 -14.62233 -14.20212 -13.93535 -13.78938 -13.32778 -13.27511 -12.92764 -12.39588 -11.95519 -11.50786 -11.36498 -11.12726 -11.00916 -10.82679 -10.58437 -10.41905 -10.33433 -10.18361 -9.43233 -8.76676 -8.39312 -7.94462 -7.79365 -6.38958 -3.79710 3.21924 3.27417 3.31799 3.91007 3.94993 4.24171 4.63140 4.84052 4.89231 5.09669 5.17018 5.28131 5.38006 5.52058 5.66303 5.70060 5.75788 5.87093 5.95530 6.01775 6.12905 6.14640 6.31844 6.46233 6.56852 7.00449 7.27090 7.38917 7.50203 7.57654 8.09309 8.65103 9.20876 9.57694 10.09770 10.78840 Molecular weight = 227.14amu Principal moments of inertia in cm(-1) A = 0.063232 B = 0.005396 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.709329 B = 5187.338376 C = 5472.714090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.577 6.577 12 C 0.048 3.952 13 N -0.514 5.514 14 C 0.051 3.949 15 C -0.110 4.110 16 C -0.153 4.153 17 C 0.094 3.906 18 H 0.090 0.910 19 N -0.845 5.845 20 C 0.064 3.936 21 H 0.272 0.728 22 H 0.392 0.608 23 H 0.046 0.954 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.341 0.659 32 H 0.336 0.664 33 H 0.025 0.975 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -14.424 2.226 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.084 4.084 13 N -0.239 5.239 14 C -0.077 4.077 15 C -0.148 4.148 16 C -0.193 4.193 17 C -0.018 4.018 18 H 0.109 0.891 19 N -0.373 5.373 20 C -0.064 4.064 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.064 0.936 24 H 0.107 0.893 25 H 0.122 0.878 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.044 0.956 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.862 -13.846 1.153 14.018 hybrid contribution -0.436 0.420 1.615 1.725 sum 1.427 -13.426 2.768 13.782 Atomic orbital electron populations 1.69607 1.05935 1.28216 1.50662 1.25252 0.95618 0.99681 0.97371 0.85922 0.78752 0.80508 0.79048 1.19895 1.21004 1.19956 1.19651 0.93324 0.82239 1.47626 0.87981 1.41866 1.09189 1.04574 1.64526 1.19744 0.88410 0.84539 0.84317 1.90479 1.13695 1.86893 1.55070 1.21825 0.93894 0.91149 1.01506 1.61400 1.25324 1.01249 1.35905 1.22274 0.95153 1.01581 0.88645 1.21477 0.98113 0.93330 1.01910 1.22460 0.99700 0.98397 0.98723 1.21455 0.94590 0.88862 0.96899 0.89139 1.58857 1.21427 1.04363 1.52642 1.22025 0.94776 0.88928 1.00719 0.91854 0.77492 0.93594 0.89288 0.87807 0.96310 0.90772 0.91944 0.92303 0.92706 0.84669 0.85182 0.95650 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 10 C 0.44 10.65 7.46 -10.99 -0.08 10.56 16 11 O -0.58 -15.63 13.92 5.55 0.08 -15.55 16 12 C 0.05 0.88 5.45 -4.98 -0.03 0.86 16 13 N -0.51 -8.91 4.39 -236.11 -1.04 -9.95 16 14 C 0.05 0.86 5.11 -3.83 -0.02 0.84 16 15 C -0.11 -1.51 6.09 -26.65 -0.16 -1.68 16 16 C -0.15 -1.74 5.57 -26.61 -0.15 -1.88 16 17 C 0.09 1.13 3.41 -67.63 -0.23 0.90 16 18 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 19 N -0.84 -8.35 9.26 -4.59 -0.04 -8.39 16 20 C 0.06 0.90 5.00 -3.83 -0.02 0.88 16 21 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 22 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 23 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 24 H 0.09 1.51 7.98 -51.93 -0.41 1.09 16 25 H 0.10 2.11 5.80 -51.93 -0.30 1.81 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.34 2.76 9.04 -39.30 -0.36 2.41 16 32 H 0.34 2.93 8.98 -39.29 -0.35 2.58 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 LS Contribution 278.35 15.07 4.19 4.19 Total: -1.00 -30.43 278.35 -7.15 -37.57 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.05 Total: 12.08 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.93 Total: 2.45 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.41 Total: -56.91 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.08 Total: -15.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.43 -7.15 -37.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041028836.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.628 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds